Wall clock time and date at job start Tue Mar 31 2020 01:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31241 * 1 3 3 Si 1.86797 * 120.00323 * 2 1 4 4 H 1.48497 * 109.47217 * 269.99965 * 3 2 1 5 5 H 1.48504 * 109.47098 * 29.99934 * 3 2 1 6 6 H 1.48497 * 109.47020 * 149.99819 * 3 2 1 7 7 C 1.39253 * 119.99616 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99559 * 176.02241 * 7 2 1 9 9 N 1.36557 * 120.00404 * 356.02616 * 7 2 1 10 10 C 1.46497 * 120.00293 * 48.36286 * 9 7 2 11 11 C 1.53000 * 109.47176 * 85.41602 * 10 9 7 12 12 C 1.50698 * 109.47333 * 180.02562 * 11 10 9 13 13 O 1.20833 * 119.99969 * 0.02562 * 12 11 10 14 14 O 1.34228 * 120.00045 * 180.02562 * 12 11 10 15 15 C 1.34777 * 119.99949 * 228.36688 * 9 7 2 16 16 O 1.21675 * 120.00227 * 185.64236 * 15 9 7 17 17 C 1.47154 * 119.99908 * 5.64509 * 15 9 7 18 18 C 1.38212 * 125.85756 * 186.44899 * 17 15 9 19 19 C 1.39174 * 107.55862 * 179.97438 * 18 17 15 20 20 C 1.38467 * 107.44922 * 0.02562 * 19 18 17 21 21 C 1.46272 * 125.94938 * 180.02562 * 20 19 18 22 22 O 1.21372 * 120.00089 * 359.97438 * 21 20 19 23 23 N 1.36698 * 125.86510 * 6.14594 * 17 15 9 24 24 H 0.97003 * 125.68884 * 0.02562 * 23 17 15 25 25 H 0.96992 * 119.99551 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.47062 * 325.41664 * 10 9 7 27 27 H 1.09001 * 109.47150 * 205.42312 * 10 9 7 28 28 H 1.08998 * 109.47171 * 300.00279 * 11 10 9 29 29 H 1.08998 * 109.46785 * 60.00602 * 11 10 9 30 30 H 0.96703 * 116.99540 * 179.97438 * 14 12 11 31 31 H 1.07995 * 126.22282 * 0.02562 * 18 17 15 32 32 H 1.07995 * 126.27747 * 180.02562 * 19 18 17 33 33 H 1.08001 * 119.99610 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3124 0.0000 0.0000 3 14 2.2465 1.6177 0.0000 4 1 2.4940 2.0463 -1.4000 5 1 1.4440 2.6527 0.7000 6 1 3.5440 1.4400 0.7001 7 6 2.0086 -1.2060 0.0005 8 1 3.0867 -1.2072 -0.0643 9 7 1.3283 -2.3872 0.0830 10 6 0.1773 -2.6321 -0.7896 11 6 0.6628 -3.1849 -2.1311 12 6 -0.5211 -3.4362 -3.0290 13 8 -1.6386 -3.1973 -2.6363 14 8 -0.3342 -3.9255 -4.2648 15 6 1.7157 -3.3276 0.9673 16 8 1.1762 -4.4182 0.9711 17 6 2.7911 -3.0355 1.9283 18 6 3.3677 -3.9416 2.7982 19 6 4.3397 -3.2632 3.5276 20 6 4.3432 -1.9486 3.0926 21 6 5.2116 -0.8818 3.5899 22 8 6.0209 -1.1159 4.4636 23 7 3.3953 -1.8228 2.1098 24 1 3.1865 -1.0084 1.6259 25 1 -0.4849 0.8400 0.0004 26 1 -0.3591 -1.6976 -0.9544 27 1 -0.4887 -3.3549 -0.3183 28 1 1.3288 -2.4620 -2.6023 29 1 1.1991 -4.1194 -1.9662 30 1 -1.1240 -4.0705 -4.8036 31 1 3.1113 -4.9862 2.8940 32 1 4.9748 -3.6847 4.2926 33 1 5.1327 0.1141 3.1796 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601069493.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:32 Heat of formation + Delta-G solvation = -111.994151 kcal Electronic energy + Delta-G solvation = -21712.659517 eV Core-core repulsion = 18125.781166 eV Total energy + Delta-G solvation = -3586.878351 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.79023 -39.85923 -38.61808 -37.87049 -35.87044 -35.32354 -32.34205 -31.23871 -30.34656 -29.05384 -25.71941 -24.97047 -23.39964 -21.21613 -20.35063 -19.83200 -19.29520 -18.38616 -17.75435 -16.47919 -16.20853 -16.11017 -15.54746 -15.07536 -14.71946 -14.56909 -14.28215 -13.88497 -13.57847 -13.18298 -12.91725 -12.77762 -12.52600 -12.28272 -12.14971 -11.94151 -11.59236 -11.30080 -11.21801 -11.14000 -10.73777 -10.23455 -10.17710 -9.72828 -9.50390 -9.01838 -8.52400 -7.96805 -7.67972 -6.75321 -4.76223 1.33076 2.59007 2.61470 2.80206 2.85545 2.91427 3.35130 3.51514 3.65475 3.68429 4.16580 4.50058 4.55942 4.66148 5.51863 5.52659 5.69666 5.76162 5.81685 5.92131 6.01356 6.24869 6.44265 6.56989 6.71659 6.78357 6.81880 7.08511 7.30004 7.38731 7.54825 7.68789 7.88805 8.04350 8.25010 8.55274 9.06510 9.49150 10.16167 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.017208 B = 0.006122 C = 0.004814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.798834 B = 4572.263825 C = 5814.463845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.056 3.944 3 Si 0.909 3.091 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.265 1.265 7 C -0.377 4.377 8 H 0.092 0.908 9 N -0.434 5.434 10 C 0.115 3.885 11 C -0.123 4.123 12 C 0.483 3.517 13 O -0.514 6.514 14 O -0.525 6.525 15 C 0.540 3.460 16 O -0.579 6.579 17 C 0.056 3.944 18 C -0.171 4.171 19 C -0.121 4.121 20 C -0.119 4.119 21 C 0.410 3.590 22 O -0.472 6.472 23 N -0.486 5.486 24 H 0.433 0.567 25 H 0.281 0.719 26 H 0.131 0.869 27 H 0.067 0.933 28 H 0.105 0.895 29 H 0.096 0.904 30 H 0.401 0.599 31 H 0.145 0.855 32 H 0.142 0.858 33 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.698 0.540 -3.116 4.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.156 4.156 3 Si 0.734 3.266 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.189 1.189 7 C -0.505 4.505 8 H 0.110 0.890 9 N -0.152 5.152 10 C -0.008 4.008 11 C -0.161 4.161 12 C 0.326 3.674 13 O -0.402 6.402 14 O -0.336 6.336 15 C 0.329 3.671 16 O -0.462 6.462 17 C -0.067 4.067 18 C -0.196 4.196 19 C -0.147 4.147 20 C -0.234 4.234 21 C 0.271 3.729 22 O -0.346 6.346 23 N -0.092 5.092 24 H 0.284 0.716 25 H 0.092 0.908 26 H 0.148 0.852 27 H 0.085 0.915 28 H 0.123 0.877 29 H 0.114 0.886 30 H 0.259 0.741 31 H 0.162 0.838 32 H 0.159 0.841 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.659 0.396 -2.415 4.402 hybrid contribution -0.363 1.147 -0.857 1.477 sum 3.296 1.543 -3.272 4.893 Atomic orbital electron populations 1.69522 1.06322 1.28820 1.42004 1.25804 0.95576 1.00095 0.94120 0.86223 0.79466 0.81272 0.79688 1.19193 1.19779 1.18890 1.19379 0.91846 0.82900 1.56362 0.89049 1.43095 1.27865 1.14282 1.29950 1.21573 0.89012 1.04085 0.86151 1.21811 0.94467 1.04000 0.95862 1.23756 0.91476 0.72223 0.79974 1.90705 1.26756 1.48271 1.74446 1.84590 1.43298 1.77824 1.27916 1.17660 0.83132 0.85492 0.80863 1.90702 1.57941 1.24092 1.73510 1.20947 0.98592 0.85643 1.01521 1.21163 0.99663 0.99533 0.99265 1.21293 1.00280 0.91819 1.01296 1.21611 1.01796 0.98352 1.01604 1.22819 0.78667 0.91287 0.80128 1.90530 1.32048 1.85409 1.26566 1.43705 1.25667 1.12137 1.27653 0.71550 0.90763 0.85169 0.91480 0.87700 0.88623 0.74087 0.83755 0.84067 0.88723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -19.21 10.88 55.51 0.60 -18.61 16 2 C 0.06 1.18 5.40 -17.43 -0.09 1.08 16 3 Si 0.91 15.88 29.34 -169.99 -4.99 10.89 16 4 H -0.27 -4.73 7.11 56.52 0.40 -4.33 16 5 H -0.27 -4.90 7.11 56.52 0.40 -4.50 16 6 H -0.26 -4.21 7.11 56.52 0.40 -3.81 16 7 C -0.38 -8.00 6.34 -15.07 -0.10 -8.10 16 8 H 0.09 1.83 6.49 -52.48 -0.34 1.49 16 9 N -0.43 -9.73 2.50 -116.15 -0.29 -10.02 16 10 C 0.12 2.54 4.36 -4.04 -0.02 2.52 16 11 C -0.12 -2.25 6.11 -27.88 -0.17 -2.42 16 12 C 0.48 8.42 8.33 36.00 0.30 8.72 16 13 O -0.51 -10.47 16.74 -18.76 -0.31 -10.78 16 14 O -0.52 -7.11 13.42 -39.25 -0.53 -7.64 16 15 C 0.54 12.42 7.61 -12.64 -0.10 12.33 16 16 O -0.58 -14.50 16.45 5.21 0.09 -14.41 16 17 C 0.06 1.16 6.74 -82.09 -0.55 0.61 16 18 C -0.17 -3.20 10.60 -39.24 -0.42 -3.62 16 19 C -0.12 -2.07 10.60 -39.15 -0.42 -2.48 16 20 C -0.12 -2.02 7.10 -82.19 -0.58 -2.60 16 21 C 0.41 6.08 11.74 33.96 0.40 6.48 16 22 O -0.47 -8.14 17.69 5.48 0.10 -8.04 16 23 N -0.49 -8.95 5.35 -5.96 -0.03 -8.98 16 24 H 0.43 7.80 5.18 -40.82 -0.21 7.59 16 25 H 0.28 6.12 8.30 -40.82 -0.34 5.78 16 26 H 0.13 3.11 5.28 -51.92 -0.27 2.84 16 27 H 0.07 1.60 7.33 -51.93 -0.38 1.22 16 28 H 0.10 1.84 8.14 -51.93 -0.42 1.41 16 29 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 30 H 0.40 3.52 9.10 45.56 0.41 3.93 16 31 H 0.14 2.54 8.06 -52.49 -0.42 2.12 16 32 H 0.14 2.15 8.06 -52.49 -0.42 1.72 16 33 H 0.10 1.09 8.06 -52.49 -0.42 0.66 16 LS Contribution 300.78 15.07 4.53 4.53 Total: -1.00 -28.50 300.78 -4.62 -33.12 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: -2.04 Total: 17.42 kcal Atomic # 6 Polarization: 14.26 SS G_CDS: -1.74 Total: 12.52 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: 0.28 Total: -37.62 kcal Atomic # 8 Polarization: -40.21 SS G_CDS: -0.66 Total: -40.87 kcal Atomic # 14 Polarization: 15.88 SS G_CDS: -4.99 Total: 10.89 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.50 -4.62 -33.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601069493.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.875 kcal (2) G-P(sol) polarization free energy of solvation -28.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds