Wall clock time and date at job start Tue Mar 31 2020 01:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31241 * 1 3 3 Si 1.86797 * 120.00323 * 2 1 4 4 H 1.48497 * 109.47217 * 269.99965 * 3 2 1 5 5 H 1.48504 * 109.47098 * 29.99934 * 3 2 1 6 6 H 1.48497 * 109.47020 * 149.99819 * 3 2 1 7 7 C 1.39253 * 119.99616 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99559 * 176.02241 * 7 2 1 9 9 N 1.36557 * 120.00404 * 356.02616 * 7 2 1 10 10 C 1.46497 * 120.00293 * 48.36286 * 9 7 2 11 11 C 1.53000 * 109.47176 * 85.41602 * 10 9 7 12 12 C 1.50698 * 109.47333 * 180.02562 * 11 10 9 13 13 O 1.20833 * 119.99969 * 0.02562 * 12 11 10 14 14 O 1.34228 * 120.00045 * 180.02562 * 12 11 10 15 15 C 1.34777 * 119.99949 * 228.36688 * 9 7 2 16 16 O 1.21675 * 120.00227 * 185.64236 * 15 9 7 17 17 C 1.47154 * 119.99908 * 5.64509 * 15 9 7 18 18 C 1.38212 * 125.85756 * 186.44899 * 17 15 9 19 19 C 1.39174 * 107.55862 * 179.97438 * 18 17 15 20 20 C 1.38467 * 107.44922 * 0.02562 * 19 18 17 21 21 C 1.46272 * 125.94938 * 180.02562 * 20 19 18 22 22 O 1.21372 * 120.00089 * 359.97438 * 21 20 19 23 23 N 1.36698 * 125.86510 * 6.14594 * 17 15 9 24 24 H 0.97003 * 125.68884 * 0.02562 * 23 17 15 25 25 H 0.96992 * 119.99551 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.47062 * 325.41664 * 10 9 7 27 27 H 1.09001 * 109.47150 * 205.42312 * 10 9 7 28 28 H 1.08998 * 109.47171 * 300.00279 * 11 10 9 29 29 H 1.08998 * 109.46785 * 60.00602 * 11 10 9 30 30 H 0.96703 * 116.99540 * 179.97438 * 14 12 11 31 31 H 1.07995 * 126.22282 * 0.02562 * 18 17 15 32 32 H 1.07995 * 126.27747 * 180.02562 * 19 18 17 33 33 H 1.08001 * 119.99610 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3124 0.0000 0.0000 3 14 2.2465 1.6177 0.0000 4 1 2.4940 2.0463 -1.4000 5 1 1.4440 2.6527 0.7000 6 1 3.5440 1.4400 0.7001 7 6 2.0086 -1.2060 0.0005 8 1 3.0867 -1.2072 -0.0643 9 7 1.3283 -2.3872 0.0830 10 6 0.1773 -2.6321 -0.7896 11 6 0.6628 -3.1849 -2.1311 12 6 -0.5211 -3.4362 -3.0290 13 8 -1.6386 -3.1973 -2.6363 14 8 -0.3342 -3.9255 -4.2648 15 6 1.7157 -3.3276 0.9673 16 8 1.1762 -4.4182 0.9711 17 6 2.7911 -3.0355 1.9283 18 6 3.3677 -3.9416 2.7982 19 6 4.3397 -3.2632 3.5276 20 6 4.3432 -1.9486 3.0926 21 6 5.2116 -0.8818 3.5899 22 8 6.0209 -1.1159 4.4636 23 7 3.3953 -1.8228 2.1098 24 1 3.1865 -1.0084 1.6259 25 1 -0.4849 0.8400 0.0004 26 1 -0.3591 -1.6976 -0.9544 27 1 -0.4887 -3.3549 -0.3183 28 1 1.3288 -2.4620 -2.6023 29 1 1.1991 -4.1194 -1.9662 30 1 -1.1240 -4.0705 -4.8036 31 1 3.1113 -4.9862 2.8940 32 1 4.9748 -3.6847 4.2926 33 1 5.1327 0.1141 3.1796 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601069493.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:32 Heat of formation + Delta-G solvation = -131.366856 kcal Electronic energy + Delta-G solvation = -21713.499581 eV Core-core repulsion = 18125.781166 eV Total energy + Delta-G solvation = -3587.718415 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.25101 -41.27204 -40.15001 -39.28614 -37.29278 -36.95128 -33.99555 -32.80658 -31.83030 -30.47995 -27.38020 -26.48184 -24.81949 -22.65259 -21.81867 -21.38104 -20.80242 -19.87642 -19.11979 -17.90627 -17.74730 -17.62759 -16.97397 -16.48544 -16.22832 -16.07511 -15.77292 -15.36344 -15.04399 -14.66906 -14.33415 -14.31414 -13.95149 -13.72430 -13.60731 -13.50503 -13.14796 -12.83448 -12.70340 -12.55061 -12.09056 -11.91222 -11.65500 -11.18505 -10.97686 -10.71997 -9.94081 -9.67429 -9.16103 -8.37844 -6.45406 -0.01244 1.11828 1.20106 1.44804 1.47014 1.57593 1.98441 2.20305 2.23032 2.25899 2.52596 2.94028 2.97723 3.46385 4.01108 4.09641 4.24619 4.32257 4.39196 4.50224 4.62005 4.74820 4.95711 5.06295 5.15142 5.19586 5.48395 5.60732 5.69494 5.85287 5.96577 6.22149 6.46141 6.61854 6.89198 7.00977 7.35225 7.79369 8.55413 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.017208 B = 0.006122 C = 0.004814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.798834 B = 4572.263825 C = 5814.463845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.019 3.981 3 Si 0.970 3.030 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.230 1.230 7 C -0.384 4.384 8 H 0.108 0.892 9 N -0.438 5.438 10 C 0.118 3.882 11 C -0.114 4.114 12 C 0.495 3.505 13 O -0.549 6.549 14 O -0.508 6.508 15 C 0.527 3.473 16 O -0.615 6.615 17 C 0.020 3.980 18 C -0.168 4.168 19 C -0.129 4.129 20 C -0.107 4.107 21 C 0.422 3.578 22 O -0.491 6.491 23 N -0.482 5.482 24 H 0.435 0.565 25 H 0.280 0.720 26 H 0.114 0.886 27 H 0.036 0.964 28 H 0.117 0.883 29 H 0.099 0.901 30 H 0.427 0.573 31 H 0.147 0.853 32 H 0.161 0.839 33 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.984 2.030 -3.243 7.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.189 4.189 3 Si 0.790 3.210 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.152 1.152 7 C -0.511 4.511 8 H 0.125 0.875 9 N -0.155 5.155 10 C -0.006 4.006 11 C -0.153 4.153 12 C 0.338 3.662 13 O -0.440 6.440 14 O -0.322 6.322 15 C 0.317 3.683 16 O -0.502 6.502 17 C -0.103 4.103 18 C -0.194 4.194 19 C -0.154 4.154 20 C -0.223 4.223 21 C 0.283 3.717 22 O -0.365 6.365 23 N -0.087 5.087 24 H 0.286 0.714 25 H 0.091 0.909 26 H 0.131 0.869 27 H 0.055 0.945 28 H 0.135 0.865 29 H 0.117 0.883 30 H 0.288 0.712 31 H 0.164 0.836 32 H 0.179 0.821 33 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 5.962 1.871 -2.580 6.761 hybrid contribution -1.059 0.657 -0.829 1.497 sum 4.903 2.528 -3.409 6.484 Atomic orbital electron populations 1.69669 1.08175 1.29561 1.43294 1.26634 0.96015 1.03186 0.93068 0.85290 0.79539 0.76438 0.79691 1.19402 1.20755 1.15208 1.19741 0.92500 0.82546 1.56335 0.87514 1.43284 1.27592 1.14806 1.29840 1.21374 0.88952 1.02463 0.87811 1.21585 0.95016 1.04230 0.94480 1.23387 0.90312 0.71668 0.80800 1.90704 1.27846 1.49994 1.75449 1.84507 1.44737 1.76625 1.26308 1.18068 0.83766 0.85208 0.81247 1.90653 1.59495 1.25408 1.74626 1.20662 0.99695 0.87184 1.02723 1.21327 0.99612 0.99660 0.98805 1.21550 1.00185 0.92049 1.01654 1.22170 1.00824 0.99141 1.00120 1.23376 0.77018 0.92097 0.79160 1.90546 1.32681 1.85779 1.27519 1.43524 1.25754 1.11436 1.27984 0.71358 0.90903 0.86895 0.94490 0.86493 0.88277 0.71186 0.83553 0.82114 0.83694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -40.96 10.88 21.71 0.24 -40.72 16 2 C 0.02 0.78 5.40 85.03 0.46 1.24 16 3 Si 0.97 30.65 29.34 68.60 2.01 32.66 16 4 H -0.27 -8.59 7.11 99.48 0.71 -7.89 16 5 H -0.28 -9.32 7.11 99.48 0.71 -8.61 16 6 H -0.23 -5.93 7.11 99.48 0.71 -5.22 16 7 C -0.38 -16.10 6.34 84.20 0.53 -15.57 16 8 H 0.11 4.08 6.49 -2.91 -0.02 4.06 16 9 N -0.44 -20.11 2.50 -639.60 -1.60 -21.71 16 10 C 0.12 5.42 4.36 86.38 0.38 5.79 16 11 C -0.11 -4.26 6.11 29.85 0.18 -4.08 16 12 C 0.49 17.17 8.33 71.24 0.59 17.77 16 13 O -0.55 -22.84 16.74 21.94 0.37 -22.47 16 14 O -0.51 -12.87 13.42 -51.39 -0.69 -13.56 16 15 C 0.53 24.96 7.61 86.58 0.66 25.62 16 16 O -0.62 -32.22 16.45 -4.27 -0.07 -32.29 16 17 C 0.02 0.80 6.74 40.72 0.27 1.07 16 18 C -0.17 -6.22 10.60 22.49 0.24 -5.98 16 19 C -0.13 -4.15 10.60 22.55 0.24 -3.91 16 20 C -0.11 -3.30 7.10 40.46 0.29 -3.01 16 21 C 0.42 10.65 11.74 69.91 0.82 11.47 16 22 O -0.49 -15.08 17.69 -3.31 -0.06 -15.13 16 23 N -0.48 -16.83 5.35 -172.78 -0.92 -17.75 16 24 H 0.43 14.60 5.18 -92.71 -0.48 14.12 16 25 H 0.28 12.46 8.30 -92.71 -0.77 11.69 16 26 H 0.11 5.65 5.28 -2.38 -0.01 5.64 16 27 H 0.04 1.87 7.33 -2.39 -0.02 1.86 16 28 H 0.12 4.05 8.14 -2.39 -0.02 4.03 16 29 H 0.10 3.62 8.14 -2.39 -0.02 3.60 16 30 H 0.43 6.51 9.10 -74.06 -0.67 5.83 16 31 H 0.15 5.21 8.06 -2.91 -0.02 5.18 16 32 H 0.16 4.49 8.06 -2.91 -0.02 4.46 16 33 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -63.43 300.78 3.98 -59.45 By element: Atomic # 1 Polarization: 41.08 SS G_CDS: 0.04 Total: 41.12 kcal Atomic # 6 Polarization: 25.75 SS G_CDS: 4.66 Total: 30.41 kcal Atomic # 7 Polarization: -77.89 SS G_CDS: -2.28 Total: -80.18 kcal Atomic # 8 Polarization: -83.01 SS G_CDS: -0.45 Total: -83.46 kcal Atomic # 14 Polarization: 30.65 SS G_CDS: 2.01 Total: 32.66 kcal Total: -63.43 3.98 -59.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601069493.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.921 kcal (2) G-P(sol) polarization free energy of solvation -63.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds