Wall clock time and date at job start Tue Mar 31 2020 01:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31363 * 1 3 3 Si 1.86804 * 119.99758 * 2 1 4 4 H 1.48507 * 109.46993 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47035 * 299.99577 * 3 2 1 6 6 H 1.48496 * 109.47384 * 59.99932 * 3 2 1 7 7 C 1.39044 * 120.00293 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00130 * 158.45518 * 7 2 1 9 9 N 1.36873 * 119.99933 * 338.45654 * 7 2 1 10 10 C 1.46495 * 120.00302 * 134.80265 * 9 7 2 11 11 C 1.53002 * 109.47105 * 282.65012 * 10 9 7 12 12 C 1.50697 * 109.47646 * 180.02562 * 11 10 9 13 13 O 1.20828 * 119.99959 * 359.97438 * 12 11 10 14 14 O 1.34224 * 120.00421 * 180.02562 * 12 11 10 15 15 C 1.34776 * 119.99796 * 314.79803 * 9 7 2 16 16 O 1.21591 * 120.00196 * 6.59419 * 15 9 7 17 17 C 1.47741 * 119.99971 * 186.60366 * 15 9 7 18 18 C 1.39638 * 120.53668 * 323.96037 * 17 15 9 19 19 N 1.31642 * 120.67925 * 179.97438 * 18 17 15 20 20 C 1.31914 * 121.94850 * 0.02562 * 19 18 17 21 21 C 1.38827 * 121.01619 * 359.97438 * 20 19 18 22 22 O 1.35924 * 120.40322 * 179.97438 * 21 20 19 23 23 C 1.38859 * 119.19527 * 0.02562 * 21 20 19 24 24 H 0.96993 * 119.99936 * 5.04397 * 1 2 3 25 25 H 1.09003 * 109.47330 * 42.64329 * 10 9 7 26 26 H 1.08998 * 109.47804 * 162.64846 * 10 9 7 27 27 H 1.09000 * 109.46957 * 299.99946 * 11 10 9 28 28 H 1.09004 * 109.47223 * 59.99543 * 11 10 9 29 29 H 0.96701 * 117.00264 * 179.97438 * 14 12 11 30 30 H 1.08000 * 119.66308 * 0.02562 * 18 17 15 31 31 H 1.07995 * 119.49315 * 180.02562 * 20 19 18 32 32 H 0.96697 * 113.99835 * 89.99450 * 22 21 20 33 33 H 1.08010 * 120.87941 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6178 0.0000 4 1 3.7076 1.3465 0.0006 5 1 1.8889 2.3964 -1.2125 6 1 1.8888 2.3965 1.2124 7 6 2.0089 -1.2041 0.0005 8 1 3.0323 -1.2369 -0.3429 9 7 1.3963 -2.3479 0.4363 10 6 1.5294 -3.5884 -0.3316 11 6 0.6054 -3.5355 -1.5500 12 6 0.7418 -4.8118 -2.3396 13 8 1.5005 -5.6749 -1.9665 14 8 0.0212 -4.9893 -3.4580 15 6 0.6707 -2.3329 1.5720 16 8 0.4601 -1.2815 2.1451 17 6 0.1314 -3.5942 2.1207 18 6 -0.3191 -4.6038 1.2676 19 7 -0.7996 -5.7289 1.7535 20 6 -0.8775 -5.9520 3.0513 21 6 -0.4511 -5.0001 3.9676 22 8 -0.5375 -5.2428 5.3022 23 6 0.0638 -3.7967 3.5041 24 1 -0.4850 0.8367 -0.0739 25 1 2.5616 -3.7016 -0.6631 26 1 1.2544 -4.4358 0.2964 27 1 -0.4268 -3.4223 -1.2186 28 1 0.8804 -2.6881 -2.1780 29 1 0.1428 -5.8240 -3.9309 30 1 -0.2720 -4.4604 0.1982 31 1 -1.2783 -6.8897 3.4066 32 1 0.2477 -5.6649 5.6768 33 1 0.4030 -3.0369 4.1928 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601071748.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:28 Heat of formation + Delta-G solvation = -126.334296 kcal Electronic energy + Delta-G solvation = -22108.649822 eV Core-core repulsion = 18521.149636 eV Total energy + Delta-G solvation = -3587.500186 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.95661 -41.13303 -39.96893 -38.16169 -37.22867 -36.56601 -34.49163 -33.13596 -31.95600 -31.26132 -27.42587 -26.06449 -24.78057 -24.35189 -22.16710 -21.46368 -19.78616 -19.18029 -18.53371 -18.44970 -17.89167 -17.48668 -17.10191 -16.87414 -16.51834 -16.11079 -15.79837 -15.21541 -14.92883 -14.48714 -14.32128 -14.14117 -13.99931 -13.47348 -13.38972 -13.08076 -12.77766 -12.69682 -12.48353 -12.31170 -12.21223 -11.99117 -11.59714 -11.04213 -10.88231 -10.77873 -10.14396 -9.84052 -9.31039 -8.27797 -6.05664 -0.29068 0.02000 1.22261 1.39799 1.47958 1.55532 1.95280 2.26341 2.33148 2.63897 2.86939 3.16013 3.22118 3.40892 3.74692 3.80926 3.85589 3.94162 3.98786 4.30807 4.44402 4.52034 4.59742 4.79852 4.90708 4.96176 5.09995 5.41621 5.48037 5.63749 6.14294 6.64980 6.80969 6.89096 7.01819 7.06319 7.49577 8.13070 8.80457 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.012129 B = 0.008129 C = 0.005191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2308.011239 B = 3443.529552 C = 5392.319515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.034 3.966 3 Si 0.969 3.031 4 H -0.257 1.257 5 H -0.270 1.270 6 H -0.297 1.297 7 C -0.373 4.373 8 H 0.091 0.909 9 N -0.444 5.444 10 C 0.099 3.901 11 C -0.123 4.123 12 C 0.498 3.502 13 O -0.540 6.540 14 O -0.509 6.509 15 C 0.499 3.501 16 O -0.574 6.574 17 C -0.153 4.153 18 C 0.089 3.911 19 N -0.475 5.475 20 C 0.086 3.914 21 C 0.070 3.930 22 O -0.490 6.490 23 C -0.077 4.077 24 H 0.264 0.736 25 H 0.077 0.923 26 H 0.094 0.906 27 H 0.101 0.899 28 H 0.115 0.885 29 H 0.428 0.572 30 H 0.170 0.830 31 H 0.200 0.800 32 H 0.416 0.584 33 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.309 -12.321 0.082 12.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.176 4.176 3 Si 0.794 3.206 4 H -0.180 1.180 5 H -0.196 1.196 6 H -0.224 1.224 7 C -0.500 4.500 8 H 0.108 0.892 9 N -0.164 5.164 10 C -0.025 4.025 11 C -0.162 4.162 12 C 0.341 3.659 13 O -0.430 6.430 14 O -0.323 6.323 15 C 0.288 3.712 16 O -0.455 6.455 17 C -0.158 4.158 18 C -0.068 4.068 19 N -0.185 5.185 20 C -0.073 4.073 21 C 0.023 3.977 22 O -0.303 6.303 23 C -0.104 4.104 24 H 0.074 0.926 25 H 0.095 0.905 26 H 0.112 0.888 27 H 0.119 0.881 28 H 0.133 0.867 29 H 0.290 0.710 30 H 0.187 0.813 31 H 0.217 0.783 32 H 0.277 0.723 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.611 -11.926 0.097 11.942 hybrid contribution 1.016 1.153 0.300 1.565 sum 0.404 -10.773 0.397 10.788 Atomic orbital electron populations 1.69900 1.08131 1.28197 1.42503 1.26068 0.95397 1.02578 0.93511 0.85273 0.79506 0.78656 0.77137 1.18015 1.19561 1.22404 1.19365 0.96988 0.85538 1.48074 0.89162 1.43277 1.46255 1.08833 1.18029 1.21927 0.99968 0.88406 0.92194 1.21647 1.03150 0.94141 0.97214 1.23170 0.75839 0.88015 0.78855 1.90699 1.37711 1.45186 1.69413 1.84523 1.63458 1.46858 1.37486 1.18313 0.83440 0.87533 0.81899 1.90606 1.60089 1.33313 1.61528 1.21252 1.02676 0.96633 0.95286 1.23552 0.93778 0.88374 1.01064 1.67767 1.13818 1.21151 1.15776 1.23773 0.96098 0.99943 0.87447 1.19236 0.99790 0.93071 0.85609 1.84795 1.45517 1.83140 1.16804 1.22044 0.96161 0.98059 0.94173 0.92637 0.90507 0.88846 0.88122 0.86710 0.70957 0.81315 0.78329 0.72338 0.84513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.99 11.86 21.68 0.26 -48.73 16 2 C 0.03 1.81 4.28 84.96 0.36 2.17 16 3 Si 0.97 43.44 29.61 68.60 2.03 45.47 16 4 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 5 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 6 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 7 C -0.37 -19.49 9.05 84.10 0.76 -18.73 16 8 H 0.09 4.50 7.92 -2.91 -0.02 4.47 16 9 N -0.44 -21.48 2.53 -638.93 -1.61 -23.10 16 10 C 0.10 3.81 4.15 86.38 0.36 4.16 16 11 C -0.12 -4.23 5.12 29.85 0.15 -4.07 16 12 C 0.50 14.62 8.29 71.23 0.59 15.21 16 13 O -0.54 -17.93 16.74 21.96 0.37 -17.56 16 14 O -0.51 -11.50 13.42 -51.36 -0.69 -12.19 16 15 C 0.50 25.45 6.85 86.76 0.59 26.04 16 16 O -0.57 -34.34 14.52 -4.00 -0.06 -34.40 16 17 C -0.15 -6.31 5.45 -20.01 -0.11 -6.42 16 18 C 0.09 3.25 8.57 85.06 0.73 3.98 16 19 N -0.48 -15.32 10.34 -194.33 -2.01 -17.33 16 20 C 0.09 2.26 11.13 84.82 0.94 3.20 16 21 C 0.07 1.94 6.73 22.56 0.15 2.09 16 22 O -0.49 -10.46 13.52 -92.70 -1.25 -11.72 16 23 C -0.08 -2.77 9.72 22.84 0.22 -2.55 16 24 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 25 H 0.08 2.88 8.09 -2.39 -0.02 2.86 16 26 H 0.09 3.46 4.02 -2.39 -0.01 3.45 16 27 H 0.10 3.58 6.96 -2.39 -0.02 3.56 16 28 H 0.11 4.16 8.09 -2.38 -0.02 4.14 16 29 H 0.43 5.23 9.10 -74.06 -0.67 4.55 16 30 H 0.17 6.11 3.35 -2.91 -0.01 6.10 16 31 H 0.20 3.53 8.06 -2.91 -0.02 3.51 16 32 H 0.42 4.22 9.06 -74.06 -0.67 3.55 16 33 H 0.14 5.02 8.06 -2.91 -0.02 4.99 16 Total: -1.00 -75.26 294.23 1.65 -73.61 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: -0.14 Total: 20.87 kcal Atomic # 6 Polarization: 20.33 SS G_CDS: 4.76 Total: 25.09 kcal Atomic # 7 Polarization: -85.80 SS G_CDS: -3.37 Total: -89.16 kcal Atomic # 8 Polarization: -74.23 SS G_CDS: -1.63 Total: -75.87 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -75.26 1.65 -73.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071748.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.726 kcal (2) G-P(sol) polarization free energy of solvation -75.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds