Wall clock time and date at job start Tue Mar 31 2020 01:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31373 * 1 3 3 Si 1.86797 * 120.00188 * 2 1 4 4 H 1.48501 * 109.47289 * 269.99986 * 3 2 1 5 5 H 1.48500 * 109.47083 * 29.99803 * 3 2 1 6 6 H 1.48506 * 109.47338 * 149.99942 * 3 2 1 7 7 C 1.39033 * 119.99892 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99633 * 201.67428 * 7 2 1 9 9 N 1.36902 * 119.99994 * 21.40308 * 7 2 1 10 10 C 1.46496 * 119.99696 * 216.46301 * 9 7 2 11 11 C 1.53005 * 109.47538 * 54.78335 * 10 9 7 12 12 C 1.50695 * 109.47524 * 179.97438 * 11 10 9 13 13 O 1.20833 * 119.99727 * 359.97438 * 12 11 10 14 14 O 1.34225 * 120.00107 * 180.02562 * 12 11 10 15 15 C 1.34778 * 120.00000 * 36.45746 * 9 7 2 16 16 O 1.21619 * 119.99895 * 3.65535 * 15 9 7 17 17 C 1.47511 * 119.99716 * 183.64891 * 15 9 7 18 18 C 1.40318 * 120.49890 * 224.17336 * 17 15 9 19 19 C 1.36952 * 118.46543 * 179.97438 * 18 17 15 20 20 C 1.39161 * 119.40260 * 359.97438 * 19 18 17 21 21 O 1.35505 * 119.51329 * 179.97438 * 20 19 18 22 22 N 1.32429 * 120.97134 * 0.02562 * 20 19 18 23 23 C 1.31695 * 121.67327 * 359.72550 * 22 20 19 24 24 H 0.96998 * 119.99995 * 4.93961 * 1 2 3 25 25 H 1.09003 * 109.47285 * 174.77826 * 10 9 7 26 26 H 1.09002 * 109.47398 * 294.78149 * 10 9 7 27 27 H 1.09003 * 109.46417 * 300.00023 * 11 10 9 28 28 H 1.09002 * 109.46928 * 59.99527 * 11 10 9 29 29 H 0.96702 * 117.00274 * 180.02562 * 14 12 11 30 30 H 1.08006 * 120.76806 * 359.97438 * 18 17 15 31 31 H 1.08001 * 120.29779 * 180.02562 * 19 18 17 32 32 H 0.96696 * 113.99850 * 89.99653 * 21 20 19 33 33 H 1.07995 * 119.76229 * 180.26604 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2478 1.6177 0.0000 4 1 2.4953 2.0464 -1.4001 5 1 1.4452 2.6526 0.7000 6 1 3.5454 1.4401 0.7001 7 6 2.0089 -1.2041 0.0005 8 1 3.0316 -1.2369 0.3460 9 7 1.3951 -2.3490 -0.4316 10 6 1.6817 -3.6265 0.2257 11 6 1.4208 -3.4971 1.7278 12 6 1.7150 -4.8114 2.4038 13 8 2.0940 -5.7550 1.7511 14 8 1.5550 -4.9341 3.7308 15 6 0.5273 -2.3008 -1.4616 16 8 0.3395 -1.2531 -2.0500 17 6 -0.1947 -3.5188 -1.8754 18 6 -0.3193 -3.8458 -3.2342 19 6 -0.9977 -4.9867 -3.5715 20 6 -1.5387 -5.7823 -2.5660 21 8 -2.2108 -6.9114 -2.8972 22 7 -1.4073 -5.4517 -1.2904 23 6 -0.7591 -4.3666 -0.9206 24 1 -0.4850 0.8369 -0.0723 25 1 1.0372 -4.4013 -0.1895 26 1 2.7252 -3.8944 0.0599 27 1 2.0653 -2.7222 2.1429 28 1 0.3773 -3.2291 1.8935 29 1 1.7566 -5.7964 4.1195 30 1 0.1099 -3.2124 -3.9966 31 1 -1.1110 -5.2669 -4.6083 32 1 -1.6530 -7.6993 -2.9524 33 1 -0.6669 -4.1288 0.1288 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601072143.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:13 Heat of formation + Delta-G solvation = -104.571102 kcal Electronic energy + Delta-G solvation = -22025.864963 eV Core-core repulsion = 18439.308499 eV Total energy + Delta-G solvation = -3586.556463 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.41992 -39.92901 -38.38582 -36.62459 -35.99908 -34.75843 -32.47069 -32.16323 -30.36979 -29.87582 -25.52219 -24.40356 -23.32411 -22.93386 -20.64608 -19.86106 -18.66439 -17.91703 -17.38530 -16.58366 -16.43038 -15.89511 -15.63929 -15.45981 -14.85743 -14.27676 -14.10801 -13.52256 -13.37582 -13.18322 -12.82933 -12.67628 -12.53707 -11.83344 -11.71886 -11.65887 -11.36884 -11.30164 -10.92501 -10.69238 -10.65402 -10.35806 -10.22472 -9.63896 -9.33003 -8.99988 -8.52851 -8.25310 -7.34515 -6.28105 -4.00034 1.09472 1.51673 2.45848 3.23397 3.26725 3.33614 3.36490 3.59285 3.95071 4.19476 4.37060 4.70691 4.93432 5.13179 5.24569 5.27685 5.29028 5.48582 5.54819 5.68314 5.83218 5.89888 6.02005 6.23652 6.31308 6.43694 6.55943 6.70446 6.72726 7.43777 7.59932 8.01394 8.10996 8.12676 8.80673 8.95959 9.42816 10.05744 10.77952 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.012968 B = 0.007612 C = 0.005112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.715953 B = 3677.534551 C = 5475.582262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.069 3.931 3 Si 0.910 3.090 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.346 4.346 8 H 0.087 0.913 9 N -0.440 5.440 10 C 0.103 3.897 11 C -0.120 4.120 12 C 0.481 3.519 13 O -0.523 6.523 14 O -0.519 6.519 15 C 0.503 3.497 16 O -0.520 6.520 17 C -0.146 4.146 18 C -0.031 4.031 19 C -0.187 4.187 20 C 0.296 3.704 21 O -0.485 6.485 22 N -0.504 5.504 23 C 0.138 3.862 24 H 0.269 0.731 25 H 0.080 0.920 26 H 0.062 0.938 27 H 0.121 0.879 28 H 0.108 0.892 29 H 0.403 0.597 30 H 0.142 0.858 31 H 0.139 0.861 32 H 0.395 0.605 33 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.370 -10.106 0.732 10.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.143 4.143 3 Si 0.737 3.263 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.472 4.472 8 H 0.105 0.895 9 N -0.161 5.161 10 C -0.021 4.021 11 C -0.158 4.158 12 C 0.324 3.676 13 O -0.412 6.412 14 O -0.330 6.330 15 C 0.291 3.709 16 O -0.398 6.398 17 C -0.151 4.151 18 C -0.058 4.058 19 C -0.208 4.208 20 C 0.117 3.883 21 O -0.291 6.291 22 N -0.222 5.222 23 C -0.020 4.020 24 H 0.079 0.921 25 H 0.098 0.902 26 H 0.080 0.920 27 H 0.139 0.861 28 H 0.126 0.874 29 H 0.261 0.739 30 H 0.160 0.840 31 H 0.156 0.844 32 H 0.252 0.748 33 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 0.248 -9.507 0.713 9.537 hybrid contribution 1.076 0.321 -0.267 1.154 sum 1.324 -9.186 0.446 9.292 Atomic orbital electron populations 1.69872 1.06678 1.28440 1.39579 1.25120 0.94719 0.99464 0.95010 0.86234 0.79404 0.82259 0.78429 1.20311 1.21257 1.19728 1.19067 0.96350 0.85229 1.46600 0.89549 1.43241 1.40693 1.05823 1.26347 1.21627 1.01644 0.88989 0.89848 1.21711 1.06131 0.91551 0.96427 1.23900 0.72703 0.91226 0.79761 1.90694 1.43475 1.41552 1.65466 1.84600 1.81715 1.41914 1.24789 1.17377 0.84474 0.86641 0.82436 1.90649 1.64530 1.30202 1.54389 1.21613 1.01030 0.97889 0.94608 1.21263 0.94381 0.94496 0.95620 1.21702 1.00897 0.97605 1.00578 1.19251 0.92026 0.89108 0.87910 1.84729 1.37076 1.17377 1.89953 1.67136 1.16141 1.19532 1.19432 1.22816 0.91150 0.88062 0.99929 0.92102 0.90192 0.91982 0.86092 0.87365 0.73923 0.83975 0.84364 0.74799 0.82073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.50 11.34 55.50 0.63 -21.87 16 2 C 0.07 1.81 4.29 -17.45 -0.07 1.73 16 3 Si 0.91 20.54 29.61 -169.99 -5.03 15.51 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.35 -8.65 8.28 -14.99 -0.12 -8.77 16 8 H 0.09 2.05 7.92 -52.48 -0.42 1.64 16 9 N -0.44 -10.18 2.76 -115.99 -0.32 -10.50 16 10 C 0.10 1.94 4.31 -4.04 -0.02 1.93 16 11 C -0.12 -1.99 5.44 -27.88 -0.15 -2.14 16 12 C 0.48 7.25 8.33 36.00 0.30 7.55 16 13 O -0.52 -9.06 16.74 -18.76 -0.31 -9.37 16 14 O -0.52 -6.29 13.42 -39.24 -0.53 -6.82 16 15 C 0.50 12.26 6.51 -12.48 -0.08 12.18 16 16 O -0.52 -14.74 14.31 5.26 0.08 -14.66 16 17 C -0.15 -2.96 5.15 -104.82 -0.54 -3.50 16 18 C -0.03 -0.55 9.78 -39.27 -0.38 -0.93 16 19 C -0.19 -2.79 9.97 -39.70 -0.40 -3.19 16 20 C 0.30 4.78 7.74 -16.95 -0.13 4.64 16 21 O -0.48 -6.49 13.55 -18.21 -0.25 -6.73 16 22 N -0.50 -9.21 10.38 -12.93 -0.13 -9.35 16 23 C 0.14 2.62 8.48 -17.10 -0.15 2.48 16 24 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 25 H 0.08 1.47 3.93 -51.93 -0.20 1.26 16 26 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16 27 H 0.12 2.03 7.55 -51.93 -0.39 1.63 16 28 H 0.11 1.82 7.71 -51.93 -0.40 1.42 16 29 H 0.40 2.98 9.10 45.56 0.41 3.40 16 30 H 0.14 2.33 8.06 -52.48 -0.42 1.91 16 31 H 0.14 1.61 8.06 -52.49 -0.42 1.18 16 32 H 0.40 3.15 9.06 45.56 0.41 3.57 16 33 H 0.16 2.98 6.08 -52.49 -0.32 2.66 16 LS Contribution 295.61 15.07 4.45 4.45 Total: -1.00 -34.16 295.61 -4.47 -38.63 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -1.31 Total: 8.73 kcal Atomic # 6 Polarization: 13.73 SS G_CDS: -1.75 Total: 11.98 kcal Atomic # 7 Polarization: -41.89 SS G_CDS: 0.17 Total: -41.71 kcal Atomic # 8 Polarization: -36.58 SS G_CDS: -1.01 Total: -37.59 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.03 Total: 15.51 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -34.16 -4.47 -38.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072143.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.946 kcal (2) G-P(sol) polarization free energy of solvation -34.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds