Wall clock time and date at job start Tue Mar 31 2020 01:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29745 * 121.50009 * 2 1 4 4 S 1.69493 * 107.81519 * 179.70719 * 3 2 1 5 5 C 1.72026 * 95.98536 * 0.36223 * 4 3 2 6 6 N 1.38806 * 127.33127 * 179.90430 * 5 4 3 7 7 C 1.46506 * 120.00294 * 359.68666 * 6 5 4 8 8 C 1.52997 * 109.47289 * 179.97438 * 7 6 5 9 9 C 1.50696 * 109.47242 * 180.02562 * 8 7 6 10 10 H 1.08004 * 119.99967 * 359.97438 * 9 8 7 11 11 C 1.37875 * 120.00542 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00563 * 179.97438 * 11 9 8 13 13 Si 1.86807 * 119.99513 * 359.97438 * 11 9 8 14 14 H 1.48499 * 109.47173 * 90.00033 * 13 11 9 15 15 H 1.48502 * 109.46811 * 209.99659 * 13 11 9 16 16 H 1.48495 * 109.47087 * 329.99741 * 13 11 9 17 17 C 1.38157 * 105.33302 * 359.64611 * 5 4 3 18 18 C 1.48324 * 123.06322 * 180.23712 * 17 5 4 19 19 N 1.33719 * 126.32103 * 359.69569 * 18 17 5 20 20 N 1.28567 * 109.84997 * 179.87955 * 19 18 17 21 21 N 1.28911 * 109.73445 * 0.38127 * 20 19 18 22 22 H 0.96999 * 126.43253 * 179.76561 * 21 20 19 23 23 N 1.32038 * 126.31039 * 179.97438 * 18 17 5 24 24 H 1.09001 * 109.47349 * 270.02440 * 1 2 3 25 25 H 1.08997 * 109.47153 * 30.02459 * 1 2 3 26 26 H 1.09000 * 109.47023 * 150.02266 * 1 2 3 27 27 H 0.97001 * 120.00455 * 179.68227 * 6 5 4 28 28 H 1.09001 * 109.47060 * 300.00220 * 7 6 5 29 29 H 1.09004 * 109.47073 * 59.99709 * 7 6 5 30 30 H 1.09001 * 109.46832 * 299.99854 * 8 7 6 31 31 H 1.08996 * 109.46952 * 59.99873 * 8 7 6 32 32 H 0.96999 * 120.00061 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1850 1.1063 0.0000 4 16 3.8318 0.7053 0.0082 5 6 3.6013 -0.9995 0.0010 6 7 4.5823 -1.9815 0.0015 7 6 5.9977 -1.6031 0.0019 8 6 6.8630 -2.8649 0.0030 9 6 8.3188 -2.4757 0.0041 10 1 8.5989 -1.4326 0.0035 11 6 9.2933 -3.4511 0.0057 12 7 10.5638 -3.1114 0.0061 13 14 8.8088 -5.2552 0.0074 14 1 8.6812 -5.7348 -1.3922 15 1 9.8511 -6.0469 0.7089 16 1 7.5090 -5.4180 0.7069 17 6 2.2320 -1.1830 0.0006 18 6 1.5951 -2.5226 0.0001 19 7 2.2281 -3.7005 -0.0057 20 7 1.3695 -4.6574 -0.0016 21 7 0.1756 -4.1711 -0.0014 22 1 -0.6523 -4.6765 -0.0019 23 7 0.2985 -2.7718 0.0002 24 1 -0.3634 0.0004 1.0277 25 1 -0.3633 0.8897 -0.5142 26 1 -0.3633 -0.8902 -0.5135 27 1 4.3309 -2.9183 0.0016 28 1 6.2163 -1.0130 -0.8881 29 1 6.2157 -1.0127 0.8918 30 1 6.6443 -3.4546 0.8933 31 1 6.6450 -3.4556 -0.8867 32 1 11.2493 -3.7977 0.0069 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606159269.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:41 Heat of formation + Delta-G solvation = 154.402727 kcal Electronic energy + Delta-G solvation = -18797.987372 eV Core-core repulsion = 15729.999230 eV Total energy + Delta-G solvation = -3067.988142 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.080 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.21090 -39.15403 -36.61953 -33.82813 -33.13046 -32.96206 -31.19562 -29.36010 -28.87376 -24.96417 -24.68786 -23.58487 -21.75543 -21.17271 -19.60768 -18.67815 -17.97845 -16.82554 -16.59993 -16.32534 -15.05433 -14.73654 -14.54907 -14.27709 -14.19777 -14.13097 -12.97694 -12.71904 -12.66152 -12.56540 -12.02184 -11.68612 -11.55148 -11.32829 -11.29495 -10.87391 -10.79941 -10.67873 -10.42834 -10.23279 -10.11502 -9.94735 -9.45149 -8.68200 -8.45237 -7.63535 -6.18346 -4.20089 0.71860 1.11681 1.22216 1.82136 1.95283 2.15780 2.96651 3.23735 3.31883 3.34806 3.36419 3.81428 4.19967 4.33371 4.78247 5.14973 5.22408 5.33595 5.46067 5.58176 5.60458 5.63424 5.76612 5.83966 6.12102 6.25523 6.44588 6.67305 6.85010 7.06027 7.09836 7.47434 7.62168 8.08829 8.32905 8.83103 9.41461 10.94030 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.018593 B = 0.005015 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.595479 B = 5582.363712 C = 7062.205697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.199 3.801 3 N -0.504 5.504 4 S 0.260 5.740 5 C 0.182 3.818 6 N -0.654 5.654 7 C 0.112 3.888 8 C -0.021 4.021 9 C -0.527 4.527 10 H 0.078 0.922 11 C 0.074 3.926 12 N -0.895 5.895 13 Si 0.878 3.122 14 H -0.275 1.275 15 H -0.286 1.286 16 H -0.264 1.264 17 C -0.261 4.261 18 C 0.310 3.690 19 N -0.318 5.318 20 N 0.015 4.985 21 N -0.305 5.305 22 H 0.467 0.533 23 N -0.309 5.309 24 H 0.081 0.919 25 H 0.076 0.924 26 H 0.094 0.906 27 H 0.421 0.579 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.027 0.973 31 H 0.023 0.977 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.474 1.320 0.007 21.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.021 3.979 3 N -0.326 5.326 4 S 0.403 5.597 5 C -0.064 4.064 6 N -0.281 5.281 7 C -0.010 4.010 8 C -0.058 4.058 9 C -0.565 4.565 10 H 0.096 0.904 11 C -0.129 4.129 12 N -0.533 5.533 13 Si 0.705 3.295 14 H -0.201 1.201 15 H -0.211 1.211 16 H -0.188 1.188 17 C -0.287 4.287 18 C 0.029 3.971 19 N -0.197 5.197 20 N 0.018 4.982 21 N -0.152 5.152 22 H 0.321 0.679 23 N -0.154 5.154 24 H 0.100 0.900 25 H 0.095 0.905 26 H 0.113 0.887 27 H 0.262 0.738 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.045 0.955 31 H 0.041 0.959 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -20.219 2.693 0.012 20.397 hybrid contribution -1.517 -3.002 -0.003 3.363 sum -21.735 -0.308 0.009 21.738 Atomic orbital electron populations 1.20750 0.86573 1.04145 1.03676 1.20673 0.98290 0.86729 0.92227 1.76564 0.98753 1.24298 1.32953 1.84390 1.11323 0.90684 1.73273 1.23423 0.91648 0.98891 0.92450 1.45178 1.04683 1.07468 1.70762 1.22089 0.75756 1.01088 1.02043 1.19768 0.95920 0.92516 0.97628 1.20812 0.87532 0.95633 1.52539 0.90430 1.24948 0.94767 0.99111 0.94079 1.69886 0.99612 1.33905 1.49864 0.86809 0.78796 0.85183 0.78755 1.20069 1.21140 1.18845 1.16746 0.89365 0.88800 1.33752 1.22632 0.86950 0.92937 0.94573 1.75246 1.25758 0.95869 1.22846 1.78289 0.88763 1.22396 1.08727 1.51006 1.08885 1.04393 1.50877 0.67946 1.78884 1.17433 0.90448 1.28594 0.90033 0.90516 0.88719 0.73766 0.90873 0.90865 0.95472 0.95907 0.92403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.94 9.62 36.01 0.35 -0.60 16 2 C 0.20 2.75 6.74 -83.28 -0.56 2.19 16 3 N -0.50 -7.47 11.99 32.51 0.39 -7.08 16 4 S 0.26 3.76 23.05 -107.50 -2.48 1.28 16 5 C 0.18 2.84 7.30 -14.42 -0.11 2.73 16 6 N -0.65 -10.84 5.71 -59.83 -0.34 -11.18 16 7 C 0.11 2.03 5.67 -4.04 -0.02 2.01 16 8 C -0.02 -0.45 4.16 -27.89 -0.12 -0.57 16 9 C -0.53 -14.02 9.66 -34.44 -0.33 -14.36 16 10 H 0.08 2.19 7.99 -52.48 -0.42 1.77 16 11 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 12 N -0.89 -26.45 13.96 55.43 0.77 -25.68 16 13 Si 0.88 20.80 27.47 -169.99 -4.67 16.13 16 14 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 15 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.26 -6.02 6.54 56.52 0.37 -5.65 16 17 C -0.26 -3.89 5.89 -105.59 -0.62 -4.51 16 18 C 0.31 4.48 7.91 -156.43 -1.24 3.24 16 19 N -0.32 -4.81 10.32 32.11 0.33 -4.48 16 20 N 0.01 0.18 13.42 60.35 0.81 0.99 16 21 N -0.31 -2.89 8.44 60.35 0.51 -2.38 16 22 H 0.47 2.11 8.96 -331.92 -2.98 -0.87 16 23 N -0.31 -3.68 10.01 32.12 0.32 -3.36 16 24 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.09 0.97 5.67 -51.93 -0.29 0.68 16 27 H 0.42 7.10 6.48 -40.82 -0.26 6.83 16 28 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 30 H 0.03 0.60 7.20 -51.93 -0.37 0.23 16 31 H 0.02 0.50 7.57 -51.93 -0.39 0.10 16 32 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 292.28 15.07 4.40 4.40 Total: -1.00 -30.83 292.28 -8.27 -39.11 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -5.58 Total: 0.14 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -2.75 Total: -7.92 kcal Atomic # 7 Polarization: -55.94 SS G_CDS: 2.79 Total: -53.15 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.67 Total: 16.13 kcal Atomic # 16 Polarization: 3.76 SS G_CDS: -2.48 Total: 1.28 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.83 -8.27 -39.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606159269.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.508 kcal (2) G-P(sol) polarization free energy of solvation -30.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 162.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds