Wall clock time and date at job start Tue Mar 31 2020 01:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38750 * 120.27186 * 2 1 4 4 N 1.31385 * 121.07643 * 179.97438 * 3 2 1 5 5 C 1.32912 * 121.68350 * 0.02562 * 4 3 2 6 6 C 1.47681 * 119.79282 * 180.02562 * 5 4 3 7 7 O 1.21610 * 120.00345 * 174.74357 * 6 5 4 8 8 N 1.34777 * 119.99929 * 354.74000 * 6 5 4 9 9 C 1.36817 * 120.00019 * 4.56953 * 8 6 5 10 10 H 1.07998 * 120.00128 * 310.76031 * 9 8 6 11 11 C 1.39079 * 120.00158 * 130.75499 * 9 8 6 12 12 N 1.31345 * 119.99527 * 4.10362 * 11 9 8 13 13 Si 1.86797 * 120.00119 * 184.10362 * 11 9 8 14 14 H 1.48504 * 109.46960 * 90.00321 * 13 11 9 15 15 H 1.48507 * 109.47099 * 210.00139 * 13 11 9 16 16 H 1.48497 * 109.47271 * 330.00053 * 13 11 9 17 17 C 1.46501 * 120.00127 * 184.57209 * 8 6 5 18 18 C 1.50703 * 109.47266 * 94.43836 * 17 8 6 19 19 O 1.20830 * 119.99875 * 0.02562 * 18 17 8 20 20 O 1.34226 * 119.99994 * 179.97438 * 18 17 8 21 21 C 1.39982 * 120.42021 * 0.02562 * 5 4 3 22 22 O 1.35649 * 120.54606 * 179.97438 * 21 5 4 23 23 C 1.38349 * 120.26918 * 179.71898 * 2 1 3 24 24 H 1.09007 * 109.47034 * 89.99983 * 1 2 3 25 25 H 1.08998 * 109.47363 * 210.00198 * 1 2 3 26 26 H 1.09003 * 109.46843 * 330.00340 * 1 2 3 27 27 H 1.08006 * 119.46364 * 359.97438 * 3 2 1 28 28 H 0.97005 * 119.99408 * 179.97438 * 12 11 9 29 29 H 1.09001 * 109.47356 * 214.43796 * 17 8 6 30 30 H 1.09003 * 109.47139 * 334.44175 * 17 8 6 31 31 H 0.96702 * 116.99797 * 180.02562 * 20 18 17 32 32 H 0.96700 * 114.00138 * 90.00202 * 22 21 5 33 33 H 1.08000 * 120.77404 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2065 1.1983 0.0000 4 7 3.5202 1.2168 0.0005 5 6 4.2341 0.0956 0.0005 6 6 5.7093 0.1651 0.0017 7 8 6.3659 -0.8539 0.0982 8 7 6.3278 1.3578 -0.1043 9 6 5.5919 2.5112 -0.1188 10 1 4.7417 2.6010 -0.7786 11 6 5.9387 3.5679 0.7163 12 7 7.0188 3.4902 1.4596 13 14 4.8685 5.0975 0.7807 14 1 3.8324 4.9327 1.8318 15 1 5.7114 6.2784 1.0974 16 1 4.2109 5.2974 -0.5356 17 6 7.7881 1.4194 -0.2041 18 6 8.1907 1.4731 -1.6553 19 8 7.3446 1.4617 -2.5178 20 8 9.4892 1.5347 -1.9898 21 6 3.5966 -1.1506 -0.0005 22 8 4.3227 -2.2964 -0.0010 23 6 2.2044 -1.1949 0.0059 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8901 0.5138 27 1 1.6621 2.1312 -0.0004 28 1 7.2609 4.2274 2.0418 29 1 8.1499 2.3118 0.3066 30 1 8.2217 0.5339 0.2607 31 1 9.6984 1.5679 -2.9333 32 1 4.5329 -2.6292 0.8822 33 1 1.6815 -2.1398 0.0101 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607903240.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:22:42 Heat of formation + Delta-G solvation = -134.834316 kcal Electronic energy + Delta-G solvation = -22307.761801 eV Core-core repulsion = 18719.893026 eV Total energy + Delta-G solvation = -3587.868775 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.80027 -41.11795 -39.64439 -38.26731 -37.09284 -36.51689 -34.56343 -33.43864 -31.47849 -30.15111 -28.23062 -26.61509 -24.60530 -23.80425 -22.62017 -21.32202 -19.79273 -19.10279 -18.97595 -18.27988 -17.63315 -17.14553 -16.74024 -16.46321 -16.34053 -16.16334 -15.61792 -15.27587 -14.65347 -14.49905 -14.15951 -14.00719 -13.51457 -13.33220 -13.22795 -13.19085 -13.02248 -12.91874 -12.55595 -12.38852 -12.12846 -12.04585 -11.61102 -10.99869 -10.88917 -10.52022 -9.97717 -9.72657 -9.29844 -8.22535 -6.05735 -0.26624 0.30631 1.30210 1.47810 1.48423 1.60601 1.78572 2.16984 2.46469 2.77532 2.90755 3.16660 3.26661 3.65303 3.90868 4.00987 4.04749 4.33494 4.40209 4.52573 4.61066 4.87258 4.91704 4.97813 5.10824 5.22644 5.28226 5.60928 5.63907 5.75985 5.92653 6.55677 6.73757 6.99057 7.09034 7.19507 7.43330 7.85983 8.79442 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.014498 B = 0.008256 C = 0.005876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.855227 B = 3390.540224 C = 4763.603965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.094 4.094 3 C 0.056 3.944 4 N -0.419 5.419 5 C 0.030 3.970 6 C 0.514 3.486 7 O -0.607 6.607 8 N -0.420 5.420 9 C -0.296 4.296 10 H 0.104 0.896 11 C -0.004 4.004 12 N -0.912 5.912 13 Si 0.989 3.011 14 H -0.269 1.269 15 H -0.283 1.283 16 H -0.265 1.265 17 C 0.103 3.897 18 C 0.471 3.529 19 O -0.549 6.549 20 O -0.509 6.509 21 C 0.100 3.900 22 O -0.487 6.487 23 C -0.117 4.117 24 H 0.089 0.911 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.181 0.819 28 H 0.273 0.727 29 H 0.153 0.847 30 H 0.098 0.902 31 H 0.420 0.580 32 H 0.405 0.595 33 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.199 -3.520 -0.408 10.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.097 4.097 3 C -0.105 4.105 4 N -0.131 5.131 5 C -0.106 4.106 6 C 0.304 3.696 7 O -0.494 6.494 8 N -0.138 5.138 9 C -0.424 4.424 10 H 0.121 0.879 11 C -0.204 4.204 12 N -0.552 5.552 13 Si 0.813 3.187 14 H -0.194 1.194 15 H -0.208 1.208 16 H -0.189 1.189 17 C -0.022 4.022 18 C 0.314 3.686 19 O -0.440 6.440 20 O -0.321 6.321 21 C 0.051 3.949 22 O -0.298 6.298 23 C -0.143 4.143 24 H 0.108 0.892 25 H 0.107 0.893 26 H 0.106 0.894 27 H 0.198 0.802 28 H 0.084 0.916 29 H 0.170 0.830 30 H 0.116 0.884 31 H 0.281 0.719 32 H 0.264 0.736 33 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -9.580 -3.091 -0.653 10.087 hybrid contribution 0.043 -0.060 -0.117 0.138 sum -9.537 -3.151 -0.769 10.073 Atomic orbital electron populations 1.20865 0.86391 1.04898 1.04043 1.21522 0.99821 0.92266 0.96066 1.23590 0.89602 0.99551 0.97721 1.68583 1.08425 1.28547 1.07511 1.21531 0.94136 0.90221 1.04761 1.18612 0.87474 0.83668 0.79835 1.90588 1.66618 1.35366 1.56788 1.43134 1.03828 1.05829 1.60984 1.19979 1.10331 0.91044 1.21088 0.87899 1.26350 0.97415 1.02511 0.94119 1.69541 1.24682 1.34218 1.26749 0.84984 0.78219 0.76462 0.79055 1.19381 1.20845 1.18905 1.21322 0.84983 1.07488 0.88426 1.24653 0.80010 0.70172 0.93786 1.90611 1.53068 1.47646 1.52656 1.84522 1.26820 1.85307 1.35494 1.19666 0.91179 0.85490 0.98547 1.84665 1.73511 1.36998 1.34609 1.22026 0.91007 1.00854 1.00367 0.89235 0.89345 0.89425 0.80236 0.91641 0.83004 0.88399 0.71896 0.73610 0.80769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.48 10.03 71.24 0.71 -0.77 16 2 C -0.09 -2.36 5.90 -19.72 -0.12 -2.48 16 3 C 0.06 1.81 10.85 84.88 0.92 2.73 16 4 N -0.42 -18.31 6.38 -184.66 -1.18 -19.49 16 5 C 0.03 1.42 6.67 41.90 0.28 1.70 16 6 C 0.51 27.83 7.60 86.74 0.66 28.48 16 7 O -0.61 -33.81 14.65 16.87 0.25 -33.57 16 8 N -0.42 -23.02 2.01 -643.05 -1.29 -24.31 16 9 C -0.30 -16.04 7.28 84.12 0.61 -15.42 16 10 H 0.10 5.69 6.05 -2.91 -0.02 5.67 16 11 C 0.00 -0.22 5.40 84.97 0.46 0.24 16 12 N -0.91 -48.47 10.94 21.69 0.24 -48.23 16 13 Si 0.99 41.48 29.56 68.60 2.03 43.51 16 14 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 15 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 16 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 17 C 0.10 5.21 5.73 85.63 0.49 5.70 16 18 C 0.47 22.17 8.37 71.24 0.60 22.77 16 19 O -0.55 -29.17 17.11 21.95 0.38 -28.80 16 20 O -0.51 -18.29 13.42 -51.38 -0.69 -18.98 16 21 C 0.10 3.81 6.74 22.95 0.15 3.97 16 22 O -0.49 -18.16 11.60 -68.71 -0.80 -18.96 16 23 C -0.12 -3.22 9.80 22.55 0.22 -3.00 16 24 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 25 H 0.09 0.94 8.09 -2.39 -0.02 0.92 16 26 H 0.09 1.02 8.09 -2.39 -0.02 1.00 16 27 H 0.18 4.57 8.06 -2.91 -0.02 4.55 16 28 H 0.27 13.67 8.31 -92.70 -0.77 12.90 16 29 H 0.15 7.95 5.40 -2.39 -0.01 7.94 16 30 H 0.10 4.89 7.24 -2.39 -0.02 4.87 16 31 H 0.42 10.47 9.10 -74.06 -0.67 9.79 16 32 H 0.40 11.80 9.06 -74.06 -0.67 11.12 16 33 H 0.17 3.41 8.06 -2.91 -0.02 3.38 16 Total: -1.00 -76.60 296.97 3.77 -72.82 By element: Atomic # 1 Polarization: 32.23 SS G_CDS: -0.15 Total: 32.09 kcal Atomic # 6 Polarization: 38.92 SS G_CDS: 4.99 Total: 43.91 kcal Atomic # 7 Polarization: -89.80 SS G_CDS: -2.24 Total: -92.03 kcal Atomic # 8 Polarization: -99.43 SS G_CDS: -0.86 Total: -100.30 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.51 kcal Total: -76.60 3.77 -72.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607903240.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.012 kcal (2) G-P(sol) polarization free energy of solvation -76.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds