Wall clock time and date at job start Tue Mar 31 2020 02:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37129 * 125.68710 * 2 1 4 4 C 1.46267 * 125.95828 * 359.97438 * 3 2 1 5 5 O 1.21370 * 119.99377 * 0.02562 * 4 3 2 6 6 C 1.38462 * 108.08735 * 179.97438 * 3 2 1 7 7 C 1.39170 * 107.45864 * 0.02562 * 6 3 2 8 8 C 1.36701 * 125.69353 * 179.97438 * 2 1 3 9 9 C 1.47153 * 125.86255 * 359.97438 * 8 2 1 10 10 O 1.21673 * 119.99956 * 8.16377 * 9 8 2 11 11 N 1.34773 * 120.00202 * 188.16444 * 9 8 2 12 12 C 1.36567 * 120.00475 * 184.52520 * 11 9 8 13 13 H 1.08006 * 119.99329 * 334.55694 * 12 11 9 14 14 C 1.39240 * 120.00400 * 154.56024 * 12 11 9 15 15 N 1.31238 * 119.99970 * 5.73696 * 14 12 11 16 16 Si 1.86795 * 120.00001 * 185.74395 * 14 12 11 17 17 H 1.48499 * 109.47439 * 59.99597 * 16 14 12 18 18 H 1.48504 * 109.47182 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47243 * 299.99342 * 16 14 12 20 20 C 1.46499 * 119.99839 * 4.52703 * 11 9 8 21 21 C 1.50702 * 109.47113 * 271.57083 * 20 11 9 22 22 O 1.20823 * 119.99678 * 1.18777 * 21 20 11 23 23 O 1.34231 * 120.00381 * 181.18704 * 21 20 11 24 24 H 1.09010 * 109.46295 * 274.58291 * 1 2 3 25 25 H 1.08993 * 109.47633 * 34.58078 * 1 2 3 26 26 H 1.08995 * 109.47181 * 154.59052 * 1 2 3 27 27 H 1.08000 * 120.00220 * 180.02562 * 4 3 2 28 28 H 1.07999 * 126.27189 * 180.27106 * 6 3 2 29 29 H 1.07997 * 126.22332 * 179.97438 * 7 6 3 30 30 H 0.97005 * 120.00313 * 180.02562 * 15 14 12 31 31 H 1.09001 * 109.47195 * 31.57221 * 20 11 9 32 32 H 1.09004 * 109.47531 * 151.57181 * 20 11 9 33 33 H 0.96697 * 117.00291 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2650 1.1138 0.0000 4 6 1.8044 2.5020 -0.0005 5 8 0.6156 2.7469 -0.0006 6 6 3.5848 0.6951 0.0006 7 6 3.5814 -0.6966 0.0004 8 6 2.2626 -1.1102 0.0005 9 6 1.7971 -2.5062 0.0017 10 8 0.6151 -2.7534 -0.1474 11 7 2.6799 -3.5108 0.1678 12 6 2.2631 -4.8082 0.0768 13 1 1.2332 -5.0601 0.2824 14 6 3.1660 -5.8060 -0.2810 15 7 4.4391 -5.5197 -0.4208 16 14 2.5651 -7.5522 -0.5621 17 1 1.5663 -7.5612 -1.6610 18 1 3.7140 -8.4178 -0.9309 19 1 1.9371 -8.0659 0.6818 20 6 4.0866 -3.2112 0.4461 21 6 4.8347 -3.0605 -0.8534 22 8 4.2482 -3.1687 -1.9042 23 8 6.1526 -2.8059 -0.8436 24 1 -0.3632 0.0821 1.0245 25 1 -0.3634 0.8460 -0.5832 26 1 -0.3633 -0.9282 -0.4409 27 1 2.5220 3.3091 -0.0009 28 1 4.4571 1.3319 0.0049 29 1 4.4510 -1.3369 0.0003 30 1 5.0680 -6.2148 -0.6704 31 1 4.1550 -2.2837 1.0145 32 1 4.5239 -4.0250 1.0247 33 1 6.5892 -2.7178 -1.7019 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608086978.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:46 Heat of formation + Delta-G solvation = -67.097546 kcal Electronic energy + Delta-G solvation = -22616.967970 eV Core-core repulsion = 19032.036482 eV Total energy + Delta-G solvation = -3584.931488 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.24656 -39.46235 -38.42202 -37.75264 -35.39739 -34.61280 -32.78566 -31.79705 -29.74816 -28.00343 -26.18903 -25.58855 -23.72386 -21.26723 -20.84280 -20.22614 -18.83368 -17.37104 -17.05260 -16.63871 -15.99674 -15.73921 -15.43684 -15.20834 -14.84717 -14.70286 -14.25841 -13.74319 -13.41151 -13.20691 -13.17530 -12.96437 -12.37815 -12.07004 -11.86210 -11.68154 -11.62166 -11.18882 -10.87378 -10.55357 -10.49021 -10.36601 -9.82210 -9.64339 -9.14283 -8.78426 -8.49439 -8.08846 -7.90704 -6.60954 -4.13587 1.14648 2.40896 2.95485 3.11986 3.16713 3.21770 3.29994 3.45001 3.82787 4.07802 4.25913 4.39806 4.62031 4.93107 5.22882 5.33235 5.40922 5.53138 5.63091 5.69582 5.89427 6.09314 6.17347 6.35230 6.48467 6.63046 6.87614 7.20568 7.32008 7.35418 7.50533 7.58565 7.84317 8.19540 8.87046 8.99209 9.10936 9.62090 10.43981 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.025059 B = 0.006280 C = 0.005216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.096373 B = 4457.744145 C = 5366.553317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.378 5.378 3 C -0.112 4.112 4 C 0.408 3.592 5 O -0.483 6.483 6 C -0.123 4.123 7 C -0.211 4.211 8 C 0.043 3.957 9 C 0.510 3.490 10 O -0.580 6.580 11 N -0.403 5.403 12 C -0.298 4.298 13 H 0.109 0.891 14 C 0.038 3.962 15 N -0.884 5.884 16 Si 0.943 3.057 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.270 1.270 20 C 0.122 3.878 21 C 0.500 3.500 22 O -0.512 6.512 23 O -0.533 6.533 24 H 0.072 0.928 25 H 0.088 0.912 26 H 0.112 0.888 27 H 0.120 0.880 28 H 0.149 0.851 29 H 0.162 0.838 30 H 0.277 0.723 31 H 0.097 0.903 32 H 0.136 0.864 33 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.361 9.189 2.543 10.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.050 5.050 3 C -0.224 4.224 4 C 0.270 3.730 5 O -0.359 6.359 6 C -0.150 4.150 7 C -0.235 4.235 8 C -0.079 4.079 9 C 0.300 3.700 10 O -0.465 6.465 11 N -0.120 5.120 12 C -0.426 4.426 13 H 0.127 0.873 14 C -0.165 4.165 15 N -0.524 5.524 16 Si 0.769 3.231 17 H -0.196 1.196 18 H -0.207 1.207 19 H -0.196 1.196 20 C -0.004 4.004 21 C 0.341 3.659 22 O -0.398 6.398 23 O -0.344 6.344 24 H 0.091 0.909 25 H 0.107 0.893 26 H 0.131 0.869 27 H 0.136 0.864 28 H 0.167 0.833 29 H 0.179 0.821 30 H 0.088 0.912 31 H 0.114 0.886 32 H 0.153 0.847 33 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 2.515 9.013 2.523 9.692 hybrid contribution 0.524 -0.950 -0.929 1.428 sum 3.039 8.063 1.595 8.763 Atomic orbital electron populations 1.22478 0.75560 1.06188 1.03736 1.43909 1.07111 1.04251 1.49763 1.21500 0.91243 0.89634 1.20047 1.23212 0.90782 0.88780 0.70229 1.90528 1.20778 1.87127 1.37425 1.21351 0.94356 0.95110 1.04141 1.22182 0.95690 0.95517 1.10080 1.20991 0.90295 0.88856 1.07741 1.16924 0.86619 0.82468 0.83985 1.90587 1.16184 1.83879 1.55873 1.42898 1.04925 1.05472 1.58673 1.19702 0.98008 0.80598 1.44253 0.87320 1.25436 0.94872 1.01377 0.94838 1.69412 1.02148 1.35056 1.45812 0.85722 0.78253 0.79816 0.79298 1.19591 1.20732 1.19566 1.21575 0.82900 1.03927 0.91952 1.23343 0.79360 0.70379 0.92857 1.90614 1.68923 1.46481 1.33798 1.84518 1.25463 1.84752 1.39710 0.90931 0.89345 0.86945 0.86401 0.83301 0.82062 0.91180 0.88606 0.84652 0.75138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.07 10.08 59.85 0.60 1.67 16 2 N -0.38 -7.18 3.18 -115.95 -0.37 -7.55 16 3 C -0.11 -1.75 6.86 -82.19 -0.56 -2.32 16 4 C 0.41 5.15 11.65 33.96 0.40 5.54 16 5 O -0.48 -7.60 15.53 5.48 0.09 -7.51 16 6 C -0.12 -1.82 10.83 -39.15 -0.42 -2.24 16 7 C -0.21 -3.84 8.17 -39.25 -0.32 -4.16 16 8 C 0.04 0.92 6.71 -82.09 -0.55 0.37 16 9 C 0.51 12.74 7.55 -12.64 -0.10 12.65 16 10 O -0.58 -15.67 14.20 5.21 0.07 -15.60 16 11 N -0.40 -10.09 2.11 -117.43 -0.25 -10.34 16 12 C -0.30 -7.94 9.26 -15.07 -0.14 -8.08 16 13 H 0.11 2.97 7.40 -52.48 -0.39 2.58 16 14 C 0.04 0.95 5.38 -17.43 -0.09 0.86 16 15 N -0.88 -21.99 8.24 55.51 0.46 -21.53 16 16 Si 0.94 20.19 29.56 -169.99 -5.02 15.16 16 17 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 18 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 19 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 20 C 0.12 2.63 4.72 -5.19 -0.02 2.61 16 21 C 0.50 10.84 3.66 36.01 0.13 10.97 16 22 O -0.51 -13.19 16.83 -18.75 -0.32 -13.50 16 23 O -0.53 -9.23 13.30 -39.26 -0.52 -9.75 16 24 H 0.07 1.17 8.14 -51.92 -0.42 0.75 16 25 H 0.09 1.43 6.54 -51.93 -0.34 1.09 16 26 H 0.11 2.20 5.88 -51.93 -0.31 1.90 16 27 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 28 H 0.15 1.55 8.06 -52.49 -0.42 1.13 16 29 H 0.16 2.89 3.06 -52.49 -0.16 2.73 16 30 H 0.28 6.63 8.31 -40.82 -0.34 6.29 16 31 H 0.10 1.78 4.79 -51.93 -0.25 1.53 16 32 H 0.14 3.00 6.46 -51.93 -0.34 2.66 16 33 H 0.39 5.20 9.10 45.56 0.41 5.62 16 LS Contribution 284.95 15.07 4.29 4.29 Total: -1.00 -33.57 284.95 -4.42 -37.99 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -1.77 Total: 10.47 kcal Atomic # 6 Polarization: 18.95 SS G_CDS: -1.08 Total: 17.87 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: -0.16 Total: -39.42 kcal Atomic # 8 Polarization: -45.69 SS G_CDS: -0.68 Total: -46.37 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -33.57 -4.42 -37.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608086978.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.108 kcal (2) G-P(sol) polarization free energy of solvation -33.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds