Wall clock time and date at job start Tue Mar 31 2020 02:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37129 * 125.68710 * 2 1 4 4 C 1.46267 * 125.95828 * 359.97438 * 3 2 1 5 5 O 1.21370 * 119.99377 * 0.02562 * 4 3 2 6 6 C 1.38462 * 108.08735 * 179.97438 * 3 2 1 7 7 C 1.39170 * 107.45864 * 0.02562 * 6 3 2 8 8 C 1.36701 * 125.69353 * 179.97438 * 2 1 3 9 9 C 1.47153 * 125.86255 * 359.97438 * 8 2 1 10 10 O 1.21673 * 119.99956 * 8.16377 * 9 8 2 11 11 N 1.34773 * 120.00202 * 188.16444 * 9 8 2 12 12 C 1.36567 * 120.00475 * 184.52520 * 11 9 8 13 13 H 1.08006 * 119.99329 * 334.55694 * 12 11 9 14 14 C 1.39240 * 120.00400 * 154.56024 * 12 11 9 15 15 N 1.31238 * 119.99970 * 5.73696 * 14 12 11 16 16 Si 1.86795 * 120.00001 * 185.74395 * 14 12 11 17 17 H 1.48499 * 109.47439 * 59.99597 * 16 14 12 18 18 H 1.48504 * 109.47182 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47243 * 299.99342 * 16 14 12 20 20 C 1.46499 * 119.99839 * 4.52703 * 11 9 8 21 21 C 1.50702 * 109.47113 * 271.57083 * 20 11 9 22 22 O 1.20823 * 119.99678 * 1.18777 * 21 20 11 23 23 O 1.34231 * 120.00381 * 181.18704 * 21 20 11 24 24 H 1.09010 * 109.46295 * 274.58291 * 1 2 3 25 25 H 1.08993 * 109.47633 * 34.58078 * 1 2 3 26 26 H 1.08995 * 109.47181 * 154.59052 * 1 2 3 27 27 H 1.08000 * 120.00220 * 180.02562 * 4 3 2 28 28 H 1.07999 * 126.27189 * 180.27106 * 6 3 2 29 29 H 1.07997 * 126.22332 * 179.97438 * 7 6 3 30 30 H 0.97005 * 120.00313 * 180.02562 * 15 14 12 31 31 H 1.09001 * 109.47195 * 31.57221 * 20 11 9 32 32 H 1.09004 * 109.47531 * 151.57181 * 20 11 9 33 33 H 0.96697 * 117.00291 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2650 1.1138 0.0000 4 6 1.8044 2.5020 -0.0005 5 8 0.6156 2.7469 -0.0006 6 6 3.5848 0.6951 0.0006 7 6 3.5814 -0.6966 0.0004 8 6 2.2626 -1.1102 0.0005 9 6 1.7971 -2.5062 0.0017 10 8 0.6151 -2.7534 -0.1474 11 7 2.6799 -3.5108 0.1678 12 6 2.2631 -4.8082 0.0768 13 1 1.2332 -5.0601 0.2824 14 6 3.1660 -5.8060 -0.2810 15 7 4.4391 -5.5197 -0.4208 16 14 2.5651 -7.5522 -0.5621 17 1 1.5663 -7.5612 -1.6610 18 1 3.7140 -8.4178 -0.9309 19 1 1.9371 -8.0659 0.6818 20 6 4.0866 -3.2112 0.4461 21 6 4.8347 -3.0605 -0.8534 22 8 4.2482 -3.1687 -1.9042 23 8 6.1526 -2.8059 -0.8436 24 1 -0.3632 0.0821 1.0245 25 1 -0.3634 0.8460 -0.5832 26 1 -0.3633 -0.9282 -0.4409 27 1 2.5220 3.3091 -0.0009 28 1 4.4571 1.3319 0.0049 29 1 4.4510 -1.3369 0.0003 30 1 5.0680 -6.2148 -0.6704 31 1 4.1550 -2.2837 1.0145 32 1 4.5239 -4.0250 1.0247 33 1 6.5892 -2.7178 -1.7019 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608086978.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:45 Heat of formation + Delta-G solvation = -91.513458 kcal Electronic energy + Delta-G solvation = -22618.026723 eV Core-core repulsion = 19032.036482 eV Total energy + Delta-G solvation = -3585.990241 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.66215 -41.08854 -39.89043 -39.23433 -37.14981 -36.37465 -34.39011 -33.45488 -31.19850 -29.69170 -27.64780 -27.23899 -25.19285 -22.89999 -22.26207 -21.68466 -20.25868 -19.20774 -18.69993 -18.14502 -17.62285 -17.35143 -16.68333 -16.63673 -16.50841 -16.27045 -15.98065 -15.21933 -15.00537 -14.73931 -14.53820 -14.37339 -13.92918 -13.71456 -13.48414 -13.30954 -13.04020 -12.93921 -12.69554 -12.22833 -12.18202 -12.03791 -11.49945 -11.03538 -10.92437 -10.60071 -10.01318 -9.79374 -9.30002 -8.50646 -6.11918 -0.08312 1.01987 1.36271 1.44218 1.47626 1.62093 1.74762 2.15057 2.20449 2.35499 2.53967 2.90739 3.05645 3.40448 3.76176 3.89606 4.14724 4.24513 4.30149 4.41367 4.46844 4.68479 4.80481 4.90008 4.98825 5.11254 5.32391 5.56796 5.84870 5.94357 6.00315 6.08946 6.30699 6.54496 6.95468 7.14792 7.47151 7.75294 8.51816 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.025059 B = 0.006280 C = 0.005216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.096373 B = 4457.744145 C = 5366.553317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.394 5.394 3 C -0.106 4.106 4 C 0.421 3.579 5 O -0.513 6.513 6 C -0.106 4.106 7 C -0.206 4.206 8 C -0.010 4.010 9 C 0.498 3.502 10 O -0.622 6.622 11 N -0.417 5.417 12 C -0.338 4.338 13 H 0.084 0.916 14 C 0.008 3.992 15 N -0.890 5.890 16 Si 0.999 3.001 17 H -0.285 1.285 18 H -0.267 1.267 19 H -0.259 1.259 20 C 0.122 3.878 21 C 0.512 3.488 22 O -0.558 6.558 23 O -0.515 6.515 24 H 0.080 0.920 25 H 0.101 0.899 26 H 0.082 0.918 27 H 0.193 0.807 28 H 0.205 0.795 29 H 0.163 0.837 30 H 0.280 0.720 31 H 0.126 0.874 32 H 0.127 0.873 33 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.723 11.634 2.766 13.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.066 5.066 3 C -0.219 4.219 4 C 0.284 3.716 5 O -0.389 6.389 6 C -0.131 4.131 7 C -0.231 4.231 8 C -0.130 4.130 9 C 0.290 3.710 10 O -0.510 6.510 11 N -0.134 5.134 12 C -0.465 4.465 13 H 0.102 0.898 14 C -0.194 4.194 15 N -0.529 5.529 16 Si 0.822 3.178 17 H -0.211 1.211 18 H -0.191 1.191 19 H -0.184 1.184 20 C -0.002 4.002 21 C 0.355 3.645 22 O -0.448 6.448 23 O -0.327 6.327 24 H 0.098 0.902 25 H 0.120 0.880 26 H 0.100 0.900 27 H 0.209 0.791 28 H 0.222 0.778 29 H 0.179 0.821 30 H 0.091 0.909 31 H 0.143 0.857 32 H 0.145 0.855 33 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 4.950 11.463 2.768 12.789 hybrid contribution -0.152 -1.513 -0.999 1.819 sum 4.798 9.950 1.769 11.187 Atomic orbital electron populations 1.22348 0.75780 1.05043 1.04144 1.44130 1.07393 1.04809 1.50290 1.22568 0.91525 0.90415 1.17391 1.24248 0.91229 0.88190 0.67956 1.90544 1.22821 1.87068 1.38457 1.21897 0.95611 0.93640 1.01904 1.22286 0.94153 0.97574 1.09117 1.20590 0.92019 0.87579 1.12779 1.17599 0.86195 0.84368 0.82871 1.90532 1.17847 1.85090 1.57569 1.43014 1.06324 1.05065 1.58957 1.19639 0.97577 0.82291 1.47022 0.89846 1.26119 0.95032 1.04250 0.93983 1.69474 1.02335 1.35884 1.45159 0.84905 0.77851 0.76057 0.78954 1.21148 1.19101 1.18373 1.21686 0.81278 1.04933 0.92321 1.23201 0.80242 0.69140 0.91955 1.90603 1.70198 1.48749 1.35237 1.84443 1.23190 1.83766 1.41287 0.90168 0.88010 0.89957 0.79150 0.77796 0.82059 0.90893 0.85654 0.85538 0.72618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.44 10.08 127.77 1.29 3.72 16 2 N -0.39 -14.72 3.18 -520.76 -1.66 -16.37 16 3 C -0.11 -2.95 6.86 40.46 0.28 -2.67 16 4 C 0.42 8.46 11.65 69.91 0.81 9.27 16 5 O -0.51 -14.38 15.53 -3.31 -0.05 -14.44 16 6 C -0.11 -2.62 10.83 22.55 0.24 -2.37 16 7 C -0.21 -7.12 8.17 22.49 0.18 -6.94 16 8 C -0.01 -0.41 6.71 40.72 0.27 -0.14 16 9 C 0.50 26.25 7.55 86.58 0.65 26.91 16 10 O -0.62 -36.24 14.20 -4.26 -0.06 -36.30 16 11 N -0.42 -21.87 2.11 -643.68 -1.36 -23.23 16 12 C -0.34 -18.98 9.26 84.20 0.78 -18.20 16 13 H 0.08 4.94 7.40 -2.91 -0.02 4.92 16 14 C 0.01 0.42 5.38 85.02 0.46 0.88 16 15 N -0.89 -44.51 8.24 21.71 0.18 -44.33 16 16 Si 1.00 42.18 29.56 68.60 2.03 44.21 16 17 H -0.29 -12.66 7.11 99.48 0.71 -11.96 16 18 H -0.27 -10.50 7.11 99.48 0.71 -9.80 16 19 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 20 C 0.12 5.33 4.72 85.63 0.40 5.74 16 21 C 0.51 21.92 3.66 71.24 0.26 22.18 16 22 O -0.56 -29.01 16.83 21.97 0.37 -28.64 16 23 O -0.51 -16.62 13.30 -51.42 -0.68 -17.31 16 24 H 0.08 2.67 8.14 -2.38 -0.02 2.65 16 25 H 0.10 3.30 6.54 -2.39 -0.02 3.28 16 26 H 0.08 3.47 5.88 -2.39 -0.01 3.45 16 27 H 0.19 1.31 8.06 -2.91 -0.02 1.28 16 28 H 0.21 2.70 8.06 -2.91 -0.02 2.68 16 29 H 0.16 5.47 3.06 -2.91 -0.01 5.46 16 30 H 0.28 13.29 8.31 -92.70 -0.77 12.52 16 31 H 0.13 4.61 4.79 -2.39 -0.01 4.60 16 32 H 0.13 5.68 6.46 -2.39 -0.02 5.67 16 33 H 0.41 9.83 9.10 -74.06 -0.67 9.15 16 Total: -1.00 -78.74 284.95 4.93 -73.82 By element: Atomic # 1 Polarization: 23.70 SS G_CDS: 0.52 Total: 24.22 kcal Atomic # 6 Polarization: 32.75 SS G_CDS: 5.64 Total: 38.39 kcal Atomic # 7 Polarization: -81.10 SS G_CDS: -2.83 Total: -83.94 kcal Atomic # 8 Polarization: -96.27 SS G_CDS: -0.43 Total: -96.69 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -78.74 4.93 -73.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608086978.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.698 kcal (2) G-P(sol) polarization free energy of solvation -78.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds