Wall clock time and date at job start Tue Mar 31 2020 01:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31337 * 1 3 3 Si 1.86802 * 120.00119 * 2 1 4 4 H 1.48498 * 109.46775 * 274.96678 * 3 2 1 5 5 H 1.48497 * 109.47007 * 34.96736 * 3 2 1 6 6 H 1.48501 * 109.47237 * 154.96996 * 3 2 1 7 7 C 1.39082 * 119.99992 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99816 * 352.95175 * 7 2 1 9 9 N 1.36821 * 119.99788 * 172.95359 * 7 2 1 10 10 C 1.46498 * 120.00535 * 313.57253 * 9 7 2 11 11 C 1.52994 * 109.47470 * 270.00516 * 10 9 7 12 12 C 1.50700 * 109.47475 * 179.97438 * 11 10 9 13 13 O 1.20819 * 119.99874 * 0.02562 * 12 11 10 14 14 O 1.34225 * 120.00176 * 179.97438 * 12 11 10 15 15 C 1.34777 * 119.99704 * 133.57326 * 9 7 2 16 16 O 1.21596 * 119.99887 * 184.72136 * 15 9 7 17 17 C 1.47781 * 120.00414 * 4.72470 * 15 9 7 18 18 C 1.39554 * 119.67073 * 174.15288 * 17 15 9 19 19 C 1.38282 * 119.13020 * 179.97438 * 18 17 15 20 20 C 1.39264 * 118.45373 * 359.97438 * 19 18 17 21 21 O 1.35729 * 120.37612 * 180.02562 * 20 19 18 22 22 C 1.39223 * 119.24720 * 0.02562 * 20 19 18 23 23 N 1.31384 * 120.82038 * 0.02562 * 22 20 19 24 24 H 0.97008 * 120.00109 * 5.00476 * 1 2 3 25 25 H 1.09010 * 109.46829 * 30.00322 * 10 9 7 26 26 H 1.09003 * 109.47351 * 149.99898 * 10 9 7 27 27 H 1.09010 * 109.46937 * 299.99741 * 11 10 9 28 28 H 1.09003 * 109.47338 * 59.99374 * 11 10 9 29 29 H 0.96697 * 117.00008 * 179.97438 * 14 12 11 30 30 H 1.07997 * 120.43359 * 0.27754 * 18 17 15 31 31 H 1.08001 * 120.77598 * 180.02562 * 19 18 17 32 32 H 0.96699 * 114.00021 * 89.99858 * 21 20 19 33 33 H 1.08004 * 119.59073 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2474 1.6177 0.0000 4 1 2.3899 2.1069 -1.3948 5 1 1.5013 2.6201 0.8024 6 1 3.5935 1.4121 0.5924 7 6 2.0088 -1.2045 0.0005 8 1 1.4749 -2.1362 0.1157 9 7 3.3692 -1.2090 -0.1448 10 6 3.9972 -0.3954 -1.1888 11 6 4.1135 -1.2165 -2.4745 12 6 4.7589 -0.3794 -3.5486 13 8 5.0920 0.7572 -3.3102 14 8 4.9645 -0.8969 -4.7700 15 6 4.1317 -1.9620 0.6725 16 8 5.3440 -1.9007 0.6005 17 6 3.4946 -2.8621 1.6563 18 6 4.2847 -3.7278 2.4137 19 6 3.6769 -4.5648 3.3314 20 6 2.2917 -4.5095 3.4641 21 8 1.6548 -5.3133 4.3533 22 6 1.5676 -3.6205 2.6745 23 7 2.1751 -2.8388 1.8107 24 1 -0.4851 0.8369 -0.0733 25 1 3.3876 0.4887 -1.3763 26 1 4.9909 -0.0889 -0.8622 27 1 4.7230 -2.1006 -2.2870 28 1 3.1197 -1.5230 -2.8011 29 1 5.3812 -0.3215 -5.4260 30 1 5.3573 -3.7403 2.2883 31 1 4.2628 -5.2450 3.9318 32 1 1.5547 -4.9248 5.2331 33 1 0.4932 -3.5727 2.7732 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608185145.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:31 Heat of formation + Delta-G solvation = -128.700526 kcal Electronic energy + Delta-G solvation = -21793.275432 eV Core-core repulsion = 18205.672639 eV Total energy + Delta-G solvation = -3587.602794 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.74361 -41.28830 -40.18840 -38.01753 -37.35222 -36.96636 -34.13957 -33.26841 -32.63581 -31.00557 -26.94317 -26.71263 -24.75821 -24.18152 -22.31394 -21.29871 -19.72344 -19.38116 -19.14117 -18.24266 -17.98388 -17.49500 -17.08400 -16.53875 -16.38646 -16.31750 -15.94271 -15.33468 -14.87436 -14.64169 -14.56938 -14.16583 -14.05212 -13.76425 -13.72782 -13.42877 -13.09533 -12.75280 -12.61005 -12.35317 -11.96830 -11.77015 -11.70301 -11.22088 -10.88792 -10.77696 -10.13296 -9.79490 -9.49018 -8.31870 -6.05465 -0.30728 0.36957 1.11861 1.18516 1.28625 1.36097 1.74377 1.95066 2.18228 2.58371 2.90722 2.99854 3.20026 3.58518 3.76675 3.80125 3.95315 4.00262 4.16037 4.30070 4.42235 4.53020 4.60745 4.81641 4.84694 5.04773 5.11740 5.46266 5.53332 5.59549 6.14390 6.50006 6.76776 6.89904 6.94548 7.15720 7.37609 7.65553 8.75795 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.018268 B = 0.006141 C = 0.005113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.369749 B = 4558.250575 C = 5475.225988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.035 3.965 3 Si 0.908 3.092 4 H -0.269 1.269 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.296 4.296 8 H 0.124 0.876 9 N -0.455 5.455 10 C 0.109 3.891 11 C -0.118 4.118 12 C 0.497 3.503 13 O -0.553 6.553 14 O -0.503 6.503 15 C 0.522 3.478 16 O -0.605 6.605 17 C 0.055 3.945 18 C -0.103 4.103 19 C -0.107 4.107 20 C 0.086 3.914 21 O -0.493 6.493 22 C 0.051 3.949 23 N -0.415 5.415 24 H 0.275 0.725 25 H 0.059 0.941 26 H 0.071 0.929 27 H 0.119 0.881 28 H 0.123 0.877 29 H 0.429 0.571 30 H 0.153 0.847 31 H 0.179 0.821 32 H 0.417 0.583 33 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.092 -7.859 2.362 9.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.168 4.168 3 Si 0.737 3.263 4 H -0.196 1.196 5 H -0.216 1.216 6 H -0.201 1.201 7 C -0.425 4.425 8 H 0.141 0.859 9 N -0.174 5.174 10 C -0.013 4.013 11 C -0.156 4.156 12 C 0.341 3.659 13 O -0.444 6.444 14 O -0.317 6.317 15 C 0.313 3.687 16 O -0.491 6.491 17 C -0.082 4.082 18 C -0.124 4.124 19 C -0.133 4.133 20 C 0.038 3.962 21 O -0.306 6.306 22 C -0.110 4.110 23 N -0.127 5.127 24 H 0.085 0.915 25 H 0.077 0.923 26 H 0.090 0.910 27 H 0.137 0.863 28 H 0.141 0.859 29 H 0.291 0.709 30 H 0.170 0.830 31 H 0.196 0.804 32 H 0.277 0.723 33 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 4.910 -7.445 1.740 9.087 hybrid contribution 0.731 1.432 0.346 1.645 sum 5.641 -6.013 2.086 8.504 Atomic orbital electron populations 1.69614 1.06591 1.28362 1.49080 1.25726 0.95560 0.99474 0.96013 0.86441 0.79142 0.82365 0.78354 1.19552 1.21602 1.20136 1.19573 0.79068 0.95850 1.47986 0.85944 1.43750 1.07307 1.40106 1.26215 1.21428 0.98505 0.93565 0.87837 1.21568 1.04050 0.99344 0.90680 1.23238 0.74336 0.85397 0.82938 1.90703 1.50098 1.21335 1.82249 1.84495 1.75165 1.49939 1.22075 1.18486 0.85674 0.83258 0.81285 1.90627 1.14115 1.71311 1.73068 1.21071 0.90403 0.98057 0.98658 1.22131 1.02069 0.93963 0.94250 1.22079 0.93861 0.98771 0.98574 1.19758 0.91038 0.91418 0.94001 1.84699 1.78233 1.42393 1.25282 1.23759 1.01983 0.91882 0.93364 1.68702 1.09779 1.18919 1.15270 0.91498 0.92280 0.91036 0.86309 0.85859 0.70887 0.82965 0.80385 0.72276 0.81563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.90 13.95 21.69 0.30 -49.60 16 2 C 0.04 1.89 5.46 84.97 0.46 2.35 16 3 Si 0.91 44.49 24.67 68.60 1.69 46.18 16 4 H -0.27 -12.90 6.93 99.48 0.69 -12.21 16 5 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 6 H -0.28 -13.97 6.77 99.48 0.67 -13.30 16 7 C -0.30 -15.32 8.05 84.12 0.68 -14.64 16 8 H 0.12 6.72 6.08 -2.91 -0.02 6.70 16 9 N -0.46 -21.91 2.10 -638.89 -1.34 -23.25 16 10 C 0.11 4.90 3.21 86.38 0.28 5.17 16 11 C -0.12 -4.22 6.13 29.85 0.18 -4.04 16 12 C 0.50 16.33 8.33 71.24 0.59 16.92 16 13 O -0.55 -21.76 16.74 21.98 0.37 -21.39 16 14 O -0.50 -11.93 13.42 -51.37 -0.69 -12.62 16 15 C 0.52 24.45 7.60 86.77 0.66 25.11 16 16 O -0.61 -29.22 15.88 -4.02 -0.06 -29.28 16 17 C 0.06 2.27 6.66 41.83 0.28 2.55 16 18 C -0.10 -3.28 9.62 22.60 0.22 -3.07 16 19 C -0.11 -2.63 10.12 22.53 0.23 -2.40 16 20 C 0.09 2.22 6.75 22.75 0.15 2.37 16 21 O -0.49 -9.61 13.52 -90.52 -1.22 -10.84 16 22 C 0.05 1.70 11.14 85.00 0.95 2.64 16 23 N -0.41 -17.39 6.31 -184.55 -1.16 -18.55 16 24 H 0.27 14.46 8.31 -92.70 -0.77 13.69 16 25 H 0.06 2.81 3.30 -2.38 -0.01 2.80 16 26 H 0.07 3.32 7.32 -2.39 -0.02 3.31 16 27 H 0.12 3.96 8.14 -2.38 -0.02 3.94 16 28 H 0.12 4.26 8.14 -2.39 -0.02 4.24 16 29 H 0.43 5.85 9.10 -74.06 -0.67 5.18 16 30 H 0.15 4.52 7.65 -2.91 -0.02 4.50 16 31 H 0.18 2.91 8.06 -2.91 -0.02 2.89 16 32 H 0.42 3.73 9.06 -74.06 -0.67 3.06 16 33 H 0.17 5.06 8.06 -2.91 -0.02 5.04 16 Total: -1.00 -72.19 293.70 2.36 -69.83 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -0.20 Total: 16.56 kcal Atomic # 6 Polarization: 28.29 SS G_CDS: 4.68 Total: 32.97 kcal Atomic # 7 Polarization: -89.20 SS G_CDS: -2.20 Total: -91.40 kcal Atomic # 8 Polarization: -72.52 SS G_CDS: -1.61 Total: -74.13 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.69 Total: 46.18 kcal Total: -72.19 2.36 -69.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608185145.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.875 kcal (2) G-P(sol) polarization free energy of solvation -72.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds