Wall clock time and date at job start Tue Mar 31 2020 01:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38413 * 120.71508 * 2 1 4 4 C 1.39241 * 119.32321 * 180.23578 * 3 2 1 5 5 O 1.35659 * 119.61415 * 179.73038 * 4 3 2 6 6 N 1.31936 * 120.77134 * 359.47099 * 4 3 2 7 7 C 1.32894 * 121.55375 * 0.54449 * 6 4 3 8 8 C 1.47981 * 119.69793 * 179.69828 * 7 6 4 9 9 O 1.21576 * 119.99714 * 187.25694 * 8 7 6 10 10 N 1.34772 * 120.00621 * 7.26614 * 8 7 6 11 11 C 1.36777 * 120.00281 * 184.99428 * 10 8 7 12 12 H 1.07995 * 120.00147 * 342.76662 * 11 10 8 13 13 C 1.39110 * 120.00060 * 162.77431 * 11 10 8 14 14 N 1.31325 * 119.99974 * 342.31980 * 13 11 10 15 15 Si 1.86804 * 120.00263 * 162.32320 * 13 11 10 16 16 H 1.48501 * 109.46569 * 359.97438 * 15 13 11 17 17 H 1.48489 * 109.47049 * 119.99673 * 15 13 11 18 18 H 1.48502 * 109.46676 * 239.99976 * 15 13 11 19 19 C 1.46506 * 119.99775 * 4.98657 * 10 8 7 20 20 C 1.50700 * 109.47176 * 276.43587 * 19 10 8 21 21 O 1.20825 * 120.00102 * 359.97438 * 20 19 10 22 22 O 1.34224 * 119.99779 * 180.02562 * 20 19 10 23 23 C 1.38690 * 120.71740 * 179.97438 * 2 1 3 24 24 H 1.09000 * 109.47545 * 89.99641 * 1 2 3 25 25 H 1.09001 * 109.47208 * 209.99855 * 1 2 3 26 26 H 1.09001 * 109.46954 * 329.99235 * 1 2 3 27 27 H 1.07996 * 120.34120 * 359.96227 * 3 2 1 28 28 H 0.96699 * 114.00593 * 89.99392 * 5 4 3 29 29 H 0.96998 * 119.99797 * 179.97438 * 14 13 11 30 30 H 1.09005 * 109.46737 * 36.43464 * 19 10 8 31 31 H 1.08993 * 109.47058 * 156.43200 * 19 10 8 32 32 H 0.96703 * 116.99939 * 179.97438 * 22 20 19 33 33 H 1.08002 * 120.41051 * 0.04301 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2139 1.1900 0.0000 4 6 3.6059 1.1561 -0.0050 5 8 4.3047 2.3189 -0.0106 6 7 4.2532 0.0065 0.0008 7 6 3.6076 -1.1551 0.0007 8 6 4.3750 -2.4204 0.0005 9 8 3.7972 -3.4817 -0.1325 10 7 5.7144 -2.3963 0.1480 11 6 6.4347 -3.5545 0.0458 12 1 5.9363 -4.5092 0.1264 13 6 7.8093 -3.5028 -0.1616 14 7 8.3659 -2.3975 -0.6010 15 14 8.8634 -5.0057 0.1845 16 1 8.0013 -6.1141 0.6678 17 1 9.5549 -5.4229 -1.0615 18 1 9.8717 -4.6744 1.2232 19 6 6.3990 -1.1294 0.4177 20 6 6.6428 -0.4039 -0.8805 21 8 6.2823 -0.8949 -1.9240 22 8 7.2615 0.7873 -0.8777 23 6 2.2154 -1.1923 0.0005 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5140 27 1 1.6913 2.1350 -0.0006 28 1 4.5105 2.6584 0.8711 29 1 9.3244 -2.3613 -0.7453 30 1 5.7785 -0.5124 1.0677 31 1 7.3522 -1.3285 0.9073 32 1 7.3959 1.2142 -1.7349 33 1 1.6939 -2.1381 0.0003 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610475683.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:24:03 Heat of formation + Delta-G solvation = -101.248123 kcal Electronic energy + Delta-G solvation = -22721.716471 eV Core-core repulsion = 19135.304103 eV Total energy + Delta-G solvation = -3586.412368 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = -0.07 seconds Orbital eigenvalues (eV) -40.43953 -38.95258 -37.93889 -36.73381 -35.12346 -34.34540 -33.75198 -31.74018 -29.97225 -27.89553 -27.41922 -25.57103 -23.30572 -22.18897 -20.88725 -19.53522 -17.95370 -17.28313 -16.89430 -16.62391 -15.97103 -15.60703 -15.47099 -15.04252 -14.68571 -14.27910 -13.97356 -13.76230 -13.26884 -12.92086 -12.75792 -12.59616 -12.15761 -11.82814 -11.68891 -11.60425 -11.51646 -11.34054 -10.94226 -10.45975 -10.41557 -10.11406 -9.54619 -9.37613 -9.23029 -8.95099 -8.59180 -8.47883 -7.96170 -6.56912 -3.96305 1.05363 1.40181 3.06209 3.18635 3.26476 3.38338 3.81519 3.93235 3.95760 4.28254 4.46664 4.59271 4.75177 5.01302 5.17280 5.22783 5.34581 5.41971 5.52695 5.74690 5.87226 5.93776 6.19022 6.39100 6.46453 6.67397 6.77688 6.80371 7.39533 7.68571 7.80522 7.87178 8.12234 8.31392 8.96641 9.13714 9.41202 9.77390 10.47651 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.022968 B = 0.006913 C = 0.005573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.788610 B = 4049.086840 C = 5023.449075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.036 4.036 3 C -0.196 4.196 4 C 0.309 3.691 5 O -0.479 6.479 6 N -0.491 5.491 7 C 0.143 3.857 8 C 0.482 3.518 9 O -0.580 6.580 10 N -0.393 5.393 11 C -0.298 4.298 12 H 0.114 0.886 13 C 0.030 3.970 14 N -0.862 5.862 15 Si 0.937 3.063 16 H -0.264 1.264 17 H -0.280 1.280 18 H -0.277 1.277 19 C 0.152 3.848 20 C 0.526 3.474 21 O -0.524 6.524 22 O -0.531 6.531 23 C -0.141 4.141 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.135 0.865 28 H 0.396 0.604 29 H 0.275 0.725 30 H 0.096 0.904 31 H 0.116 0.884 32 H 0.387 0.613 33 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.402 9.560 5.015 13.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.044 4.044 3 C -0.218 4.218 4 C 0.129 3.871 5 O -0.286 6.286 6 N -0.215 5.215 7 C 0.006 3.994 8 C 0.271 3.729 9 O -0.465 6.465 10 N -0.108 5.108 11 C -0.426 4.426 12 H 0.132 0.868 13 C -0.175 4.175 14 N -0.500 5.500 15 Si 0.763 3.237 16 H -0.188 1.188 17 H -0.205 1.205 18 H -0.203 1.203 19 C 0.026 3.974 20 C 0.368 3.632 21 O -0.411 6.411 22 O -0.341 6.341 23 C -0.162 4.162 24 H 0.095 0.905 25 H 0.092 0.908 26 H 0.088 0.912 27 H 0.153 0.847 28 H 0.253 0.747 29 H 0.086 0.914 30 H 0.113 0.887 31 H 0.134 0.866 32 H 0.242 0.758 33 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -6.747 8.718 4.403 11.871 hybrid contribution 0.109 0.059 -0.282 0.308 sum -6.638 8.777 4.122 11.751 Atomic orbital electron populations 1.20789 0.89999 1.03171 1.02882 1.20132 0.96686 0.92194 0.95387 1.21936 0.93863 0.99054 1.06935 1.19249 0.87058 0.85254 0.95514 1.84795 1.76165 1.33999 1.33632 1.67662 1.41109 0.98163 1.14537 1.21434 0.91716 0.91385 0.94898 1.17440 0.82807 0.86624 0.86016 1.90618 1.68938 1.29990 1.56910 1.43382 1.04344 1.06828 1.56206 1.19968 0.89584 0.86453 1.46562 0.86803 1.25456 0.97662 0.99007 0.95384 1.69811 1.12720 1.27931 1.39573 0.85690 0.79185 0.80619 0.78232 1.18804 1.20536 1.20263 1.20905 0.99890 0.84394 0.92212 1.23047 0.71136 0.76805 0.92236 1.90554 1.49941 1.66146 1.34416 1.84476 1.74412 1.35846 1.39403 1.21926 0.93997 0.99125 1.01160 0.90534 0.90786 0.91189 0.84730 0.74724 0.91405 0.88671 0.86627 0.75776 0.83589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 10.06 36.00 0.36 -0.75 16 2 C -0.04 -0.52 5.91 -104.39 -0.62 -1.14 16 3 C -0.20 -2.75 9.75 -39.14 -0.38 -3.14 16 4 C 0.31 5.18 7.74 -17.13 -0.13 5.04 16 5 O -0.48 -6.81 13.56 -18.68 -0.25 -7.07 16 6 N -0.49 -10.02 4.73 -9.89 -0.05 -10.07 16 7 C 0.14 3.14 6.54 -83.03 -0.54 2.60 16 8 C 0.48 12.65 7.36 -12.27 -0.09 12.56 16 9 O -0.58 -16.42 15.98 5.30 0.08 -16.33 16 10 N -0.39 -10.49 2.18 -117.13 -0.26 -10.75 16 11 C -0.30 -8.28 9.38 -15.02 -0.14 -8.42 16 12 H 0.11 3.25 7.32 -52.49 -0.38 2.87 16 13 C 0.03 0.79 4.97 -17.44 -0.09 0.70 16 14 N -0.86 -22.81 9.14 55.50 0.51 -22.31 16 15 Si 0.94 20.17 29.59 -169.99 -5.03 15.14 16 16 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 17 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 18 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 19 C 0.15 3.63 4.78 -5.19 -0.02 3.60 16 20 C 0.53 12.88 4.45 36.01 0.16 13.04 16 21 O -0.52 -14.95 16.83 -18.75 -0.32 -15.27 16 22 O -0.53 -10.85 13.42 -39.24 -0.53 -11.38 16 23 C -0.14 -2.55 9.33 -39.03 -0.36 -2.92 16 24 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 26 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 27 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 28 H 0.40 3.51 9.06 45.56 0.41 3.92 16 29 H 0.28 6.84 8.31 -40.82 -0.34 6.50 16 30 H 0.10 2.05 5.85 -51.93 -0.30 1.74 16 31 H 0.12 2.80 6.25 -51.93 -0.32 2.48 16 32 H 0.39 6.50 9.10 45.56 0.41 6.91 16 33 H 0.15 2.58 7.65 -52.49 -0.40 2.18 16 LS Contribution 292.96 15.07 4.41 4.41 Total: -1.00 -35.68 292.96 -4.69 -40.36 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -1.41 Total: 12.07 kcal Atomic # 6 Polarization: 23.04 SS G_CDS: -1.86 Total: 21.18 kcal Atomic # 7 Polarization: -43.33 SS G_CDS: 0.21 Total: -43.12 kcal Atomic # 8 Polarization: -49.03 SS G_CDS: -1.01 Total: -50.04 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.03 Total: 15.14 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -35.68 -4.69 -40.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610475683.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.884 kcal (2) G-P(sol) polarization free energy of solvation -35.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.07 seconds