Wall clock time and date at job start Tue Mar 31 2020 00:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40055 * 125.87021 * 2 1 4 4 C 1.30221 * 109.72758 * 179.97438 * 3 2 1 5 5 C 1.41242 * 108.46612 * 0.02562 * 4 3 2 6 6 C 1.36326 * 125.86775 * 179.97438 * 2 1 3 7 7 N 1.33139 * 134.64136 * 359.97438 * 6 2 1 8 8 C 1.31495 * 120.63691 * 180.02562 * 7 6 2 9 9 C 1.50693 * 118.69131 * 180.02562 * 8 7 6 10 10 S 1.81406 * 109.47004 * 90.00060 * 9 8 7 11 11 C 1.81399 * 102.99797 * 179.97438 * 10 9 8 12 12 C 1.50705 * 109.47236 * 179.97438 * 11 10 9 13 13 H 1.08004 * 119.99320 * 359.97438 * 12 11 10 14 14 C 1.37873 * 120.00129 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00187 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99833 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47081 * 60.00655 * 16 14 12 18 18 H 1.48500 * 109.47149 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47544 * 300.00693 * 16 14 12 20 20 N 1.32163 * 122.61650 * 359.71543 * 8 7 6 21 21 C 1.32662 * 121.22698 * 0.57694 * 20 8 7 22 22 O 1.35368 * 120.79302 * 179.71333 * 21 20 8 23 23 H 1.09001 * 109.47315 * 89.97530 * 1 2 3 24 24 H 1.09009 * 109.47210 * 209.97564 * 1 2 3 25 25 H 1.08997 * 109.47241 * 329.97088 * 1 2 3 26 26 H 1.07994 * 125.77125 * 179.97438 * 4 3 2 27 27 H 1.08998 * 109.47228 * 209.99889 * 9 8 7 28 28 H 1.09001 * 109.47130 * 330.00105 * 9 8 7 29 29 H 1.08996 * 109.47483 * 300.00226 * 11 10 9 30 30 H 1.09000 * 109.47084 * 59.99991 * 11 10 9 31 31 H 0.96993 * 119.99972 * 179.97438 * 15 14 12 32 32 H 0.96700 * 114.00230 * 269.72689 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2856 1.1349 0.0000 4 6 3.5365 0.7729 0.0005 5 6 3.5937 -0.6384 0.0003 6 6 2.2637 -1.1047 0.0005 7 7 2.0442 -2.4179 0.0015 8 6 3.0496 -3.2654 0.0022 9 6 2.7508 -4.7424 0.0028 10 16 2.6316 -5.3358 -1.7073 11 6 2.2749 -7.1025 -1.5022 12 6 2.1441 -7.7492 -2.8571 13 1 2.2632 -7.1565 -3.7521 14 6 1.8724 -9.0975 -2.9542 15 7 1.7269 -9.8191 -1.8644 16 14 1.7096 -9.8988 -4.6336 17 1 2.9793 -9.7338 -5.3860 18 1 1.4178 -11.3452 -4.4658 19 1 0.6021 -9.2547 -5.3843 20 7 4.3117 -2.8734 -0.0035 21 6 4.6321 -1.5860 0.0010 22 8 5.9279 -1.1943 0.0009 23 1 -0.3634 0.0004 -1.0277 24 1 -0.3634 -0.8903 0.5135 25 1 -0.3633 0.8897 0.5143 26 1 4.3865 1.4390 0.0003 27 1 3.5509 -5.2748 0.5171 28 1 1.8063 -4.9218 0.5163 29 1 3.0871 -7.5755 -0.9503 30 1 1.3424 -7.2233 -0.9509 31 1 1.5354 -10.7674 -1.9327 32 1 6.3043 -1.0798 0.8843 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001652879410.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:58 Heat of formation + Delta-G solvation = 52.285311 kcal Electronic energy + Delta-G solvation = -18371.828874 eV Core-core repulsion = 15267.119837 eV Total energy + Delta-G solvation = -3104.709037 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.29217 -40.48066 -38.78464 -35.28372 -34.82225 -33.70596 -32.93224 -30.68633 -29.44607 -28.12055 -25.38143 -24.94703 -23.75125 -22.22773 -19.88368 -19.69124 -18.69963 -18.35812 -17.68228 -17.11935 -16.69195 -16.43933 -15.84282 -15.65149 -15.27248 -14.90481 -14.81479 -14.38493 -14.17215 -13.81311 -13.64014 -13.55080 -13.21534 -12.70813 -12.70164 -12.52005 -12.12585 -12.08769 -11.80789 -11.58580 -10.81592 -10.72689 -10.57493 -10.28118 -9.87637 -8.51545 -8.32038 -6.45062 -0.85504 -0.06854 0.78364 0.93960 1.30525 1.41857 1.44655 1.53403 1.90602 2.13263 2.38057 2.52828 2.61556 2.92231 3.02844 3.38035 3.54635 3.79335 3.98323 4.20325 4.32556 4.36506 4.42011 4.61161 4.86257 4.96243 4.97145 5.13023 5.34584 5.57745 5.82084 5.88939 6.18545 6.50352 6.60967 6.87712 7.22540 8.79722 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.028008 B = 0.003594 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.462384 B = 7789.258404 C = 8300.593317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.385 5.385 3 N -0.255 5.255 4 C 0.127 3.873 5 C -0.309 4.309 6 C 0.331 3.669 7 N -0.543 5.543 8 C 0.411 3.589 9 C -0.018 4.018 10 S -0.287 6.287 11 C 0.096 3.904 12 C -0.539 4.539 13 H 0.060 0.940 14 C 0.019 3.981 15 N -0.922 5.922 16 Si 0.975 3.025 17 H -0.267 1.267 18 H -0.274 1.274 19 H -0.268 1.268 20 N -0.572 5.572 21 C 0.462 3.538 22 O -0.464 6.464 23 H 0.082 0.918 24 H 0.093 0.907 25 H 0.116 0.884 26 H 0.248 0.752 27 H 0.116 0.884 28 H 0.113 0.887 29 H 0.023 0.977 30 H 0.023 0.977 31 H 0.271 0.729 32 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.157 21.865 8.345 23.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.174 5.174 3 N -0.068 5.068 4 C -0.070 4.070 5 C -0.324 4.324 6 C 0.083 3.917 7 N -0.268 5.268 8 C 0.139 3.861 9 C -0.168 4.168 10 S -0.061 6.061 11 C -0.051 4.051 12 C -0.578 4.578 13 H 0.078 0.922 14 C -0.182 4.182 15 N -0.561 5.561 16 Si 0.798 3.202 17 H -0.192 1.192 18 H -0.199 1.199 19 H -0.193 1.193 20 N -0.302 5.302 21 C 0.264 3.736 22 O -0.276 6.276 23 H 0.100 0.900 24 H 0.112 0.888 25 H 0.134 0.866 26 H 0.264 0.736 27 H 0.135 0.865 28 H 0.132 0.868 29 H 0.042 0.958 30 H 0.041 0.959 31 H 0.080 0.920 32 H 0.303 0.697 Dipole moment (debyes) X Y Z Total from point charges 1.918 22.414 6.935 23.541 hybrid contribution 0.414 -1.304 0.865 1.619 sum 2.332 21.111 7.800 22.626 Atomic orbital electron populations 1.22182 0.71037 1.05965 1.04640 1.48682 1.07702 0.99497 1.61516 1.76978 1.02660 1.06853 1.20338 1.24476 0.95875 0.91738 0.94935 1.20563 0.94385 0.97522 1.19963 1.19321 0.89757 0.88162 0.94437 1.67231 1.37143 1.00288 1.22105 1.21668 0.82167 0.94550 0.87716 1.21912 1.06931 0.89424 0.98509 1.86777 1.94703 1.14733 1.09873 1.20814 0.98204 0.85899 1.00214 1.20915 1.50913 0.94320 0.91648 0.92213 1.25847 0.93855 0.97052 1.01487 1.70034 1.48095 1.08002 1.29943 0.85352 0.79161 0.77274 0.78401 1.19232 1.19908 1.19251 1.67845 1.21865 1.18750 1.21694 1.18954 0.85188 0.85205 0.84224 1.84616 1.19463 1.87012 1.36510 0.89989 0.88825 0.86598 0.73580 0.86539 0.86825 0.95839 0.95871 0.91965 0.69692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.69 11.47 127.77 1.47 3.16 16 2 N -0.38 -9.16 4.05 -366.64 -1.48 -10.65 16 3 N -0.26 -5.33 12.44 -56.43 -0.70 -6.04 16 4 C 0.13 2.15 12.05 85.67 1.03 3.19 16 5 C -0.31 -7.43 6.19 -21.31 -0.13 -7.56 16 6 C 0.33 9.54 8.04 134.18 1.08 10.62 16 7 N -0.54 -18.13 10.35 -185.88 -1.92 -20.05 16 8 C 0.41 14.12 6.89 138.73 0.96 15.08 16 9 C -0.02 -0.67 6.35 71.23 0.45 -0.22 16 10 S -0.29 -13.19 21.64 -56.49 -1.22 -14.42 16 11 C 0.10 5.15 5.70 71.24 0.41 5.55 16 12 C -0.54 -31.15 9.13 25.60 0.23 -30.92 16 13 H 0.06 3.46 7.71 -2.91 -0.02 3.44 16 14 C 0.02 1.06 5.46 84.65 0.46 1.52 16 15 N -0.92 -53.99 13.29 21.45 0.28 -53.70 16 16 Si 0.97 43.91 29.54 68.60 2.03 45.93 16 17 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 18 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 19 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 20 N -0.57 -18.36 10.33 -300.05 -3.10 -21.46 16 21 C 0.46 11.54 7.90 85.14 0.67 12.22 16 22 O -0.46 -7.83 13.58 -86.59 -1.18 -9.01 16 23 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 25 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.25 1.59 8.06 -2.91 -0.02 1.57 16 27 H 0.12 3.95 8.14 -2.39 -0.02 3.93 16 28 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 29 H 0.02 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.02 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 32 H 0.44 1.96 9.06 -74.06 -0.67 1.29 16 Total: -1.00 -74.94 305.84 -0.17 -75.11 By element: Atomic # 1 Polarization: 1.15 SS G_CDS: 0.50 Total: 1.65 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: 6.63 Total: 12.64 kcal Atomic # 7 Polarization: -104.98 SS G_CDS: -6.92 Total: -111.91 kcal Atomic # 8 Polarization: -7.83 SS G_CDS: -1.18 Total: -9.01 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 16 Polarization: -13.19 SS G_CDS: -1.22 Total: -14.42 kcal Total: -74.94 -0.17 -75.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001652879410.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.391 kcal (2) G-P(sol) polarization free energy of solvation -74.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds