Wall clock time and date at job start Tue Mar 31 2020 02:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46504 * 119.99476 * 2 1 4 4 C 1.50695 * 109.47114 * 83.67940 * 3 2 1 5 5 H 1.07999 * 120.00149 * 355.21295 * 4 3 2 6 6 C 1.37878 * 120.00438 * 175.21939 * 4 3 2 7 7 N 1.31513 * 119.99801 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 120.00305 * 180.02562 * 6 4 3 9 9 H 1.48495 * 109.47313 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47063 * 119.99862 * 8 6 4 11 11 H 1.48503 * 109.46779 * 239.99470 * 8 6 4 12 12 S 1.65593 * 120.00271 * 180.02562 * 2 1 3 13 13 O 1.42104 * 106.40221 * 203.29618 * 12 2 1 14 14 O 1.42101 * 106.40490 * 336.21799 * 12 2 1 15 15 N 1.65602 * 107.22080 * 89.75984 * 12 2 1 16 16 C 1.46499 * 119.99956 * 65.64655 * 15 12 2 17 17 H 1.08992 * 110.43844 * 27.00381 * 16 15 12 18 18 C 1.54109 * 110.48829 * 264.45540 * 16 15 12 19 19 O 1.43741 * 107.29194 * 239.29456 * 18 16 15 20 20 C 1.44374 * 106.97987 * 26.51631 * 19 18 16 21 21 C 1.54817 * 110.48719 * 149.69071 * 16 15 12 22 22 H 1.08991 * 110.90712 * 215.99566 * 21 16 15 23 23 O 1.42897 * 110.90349 * 339.59858 * 21 16 15 24 24 H 1.08998 * 109.47058 * 90.00191 * 1 2 3 25 25 H 1.09000 * 109.46803 * 209.99708 * 1 2 3 26 26 H 1.08997 * 109.47662 * 329.99469 * 1 2 3 27 27 H 1.08996 * 109.47672 * 323.67840 * 3 2 1 28 28 H 1.09000 * 109.47097 * 203.67493 * 3 2 1 29 29 H 0.97002 * 120.00413 * 180.02562 * 7 6 4 30 30 H 0.97004 * 119.99881 * 245.65921 * 15 12 2 31 31 H 1.08994 * 109.87737 * 358.72066 * 18 16 15 32 32 H 1.08994 * 109.87391 * 119.72040 * 18 16 15 33 33 H 1.09007 * 110.61876 * 78.43529 * 20 19 18 34 34 H 1.08996 * 110.62081 * 201.28341 * 20 19 18 35 35 H 0.96702 * 113.99299 * 179.97438 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3130 1.7821 1.4121 5 1 1.8184 1.2608 2.2184 6 6 3.0502 2.9172 1.6750 7 7 3.6529 3.5517 0.6933 8 14 3.1942 3.5529 3.4256 9 1 2.4297 2.6660 4.3388 10 1 4.6228 3.5683 3.8307 11 1 2.6441 4.9304 3.4987 12 16 2.2930 -1.4340 -0.0006 13 8 3.5780 -1.1557 0.5386 14 8 1.4134 -2.4056 0.5486 15 7 2.5324 -1.8612 -1.5826 16 6 3.3888 -1.0397 -2.4416 17 1 4.1344 -0.5143 -1.8449 18 6 2.5406 -0.0381 -3.2492 19 8 2.7770 -0.3035 -4.6420 20 6 3.1528 -1.6934 -4.7485 21 6 4.0726 -1.9144 -3.5206 22 1 5.0838 -1.5620 -3.7236 23 8 4.0821 -3.2894 -3.1314 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5139 27 1 1.6620 1.9975 -0.6087 28 1 3.1941 1.1130 -0.4127 29 1 4.1719 4.3501 0.8782 30 1 2.1055 -2.6553 -1.9405 31 1 1.4843 -0.1772 -3.0195 32 1 2.8412 0.9814 -3.0076 33 1 2.2731 -2.3345 -4.6894 34 1 3.6965 -1.8741 -5.6757 35 1 4.4998 -3.8774 -3.7755 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670788103.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:59 Heat of formation + Delta-G solvation = -191.160512 kcal Electronic energy + Delta-G solvation = -21586.785474 eV Core-core repulsion = 18131.918164 eV Total energy + Delta-G solvation = -3454.867311 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.097 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.84124 -38.30367 -37.25824 -37.17331 -36.85884 -35.50596 -34.48815 -30.31198 -29.66234 -29.28843 -26.79274 -24.19130 -23.95372 -22.27645 -20.67007 -19.18173 -18.66884 -18.33178 -18.24733 -17.40175 -17.16036 -16.73610 -16.32573 -16.21435 -15.71162 -15.14733 -15.00062 -14.36253 -14.14882 -14.01613 -13.94523 -13.58493 -13.34018 -13.17373 -13.08001 -13.02149 -12.94759 -12.82240 -12.46384 -12.36649 -12.02056 -11.96390 -11.71839 -11.20623 -10.66365 -10.60696 -10.51127 -9.78995 -8.19715 -6.30516 -0.36484 1.38668 1.41526 1.52481 2.00290 2.40269 2.52256 2.80451 3.11911 3.26412 3.38986 3.44106 3.69537 3.96543 4.08716 4.19280 4.22280 4.36044 4.71613 4.74768 4.77346 4.80724 4.84922 5.01822 5.08411 5.20613 5.46260 5.70320 5.71611 5.87931 6.12522 6.15381 6.77577 6.88275 7.38269 8.87719 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.021835 B = 0.006311 C = 0.005705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.038465 B = 4435.928544 C = 4907.031200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -1.002 6.002 3 C 0.272 3.728 4 C -0.551 4.551 5 H 0.051 0.949 6 C 0.014 3.986 7 N -0.920 5.920 8 Si 0.953 3.047 9 H -0.272 1.272 10 H -0.281 1.281 11 H -0.270 1.270 12 S 2.798 3.202 13 O -1.009 7.009 14 O -1.010 7.010 15 N -1.092 6.092 16 C 0.113 3.887 17 H 0.092 0.908 18 C 0.035 3.965 19 O -0.383 6.383 20 C 0.018 3.982 21 C 0.077 3.923 22 H 0.100 0.900 23 O -0.560 6.560 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.031 0.969 28 H 0.023 0.977 29 H 0.267 0.733 30 H 0.426 0.574 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.127 0.873 35 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.048 -10.733 -12.797 16.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.845 5.845 3 C 0.148 3.852 4 C -0.591 4.591 5 H 0.069 0.931 6 C -0.186 4.186 7 N -0.560 5.560 8 Si 0.779 3.221 9 H -0.196 1.196 10 H -0.207 1.207 11 H -0.195 1.195 12 S 2.806 3.194 13 O -0.992 6.992 14 O -0.994 6.994 15 N -0.855 5.855 16 C 0.004 3.996 17 H 0.110 0.890 18 C -0.044 4.044 19 O -0.301 6.301 20 C -0.059 4.059 21 C 0.016 3.984 22 H 0.118 0.882 23 O -0.369 6.369 24 H 0.091 0.909 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.049 0.951 28 H 0.041 0.959 29 H 0.076 0.924 30 H 0.263 0.737 31 H 0.095 0.905 32 H 0.108 0.892 33 H 0.095 0.905 34 H 0.145 0.855 35 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -1.902 -10.527 -11.648 15.815 hybrid contribution 0.252 0.194 0.327 0.457 sum -1.650 -10.333 -11.321 15.416 Atomic orbital electron populations 1.21562 0.77980 1.03561 1.02508 1.57516 1.15767 1.21931 1.89258 1.18667 0.90537 0.80096 0.95865 1.21881 1.31597 1.10517 0.95069 0.93075 1.25689 0.94805 0.96881 1.01175 1.69989 1.33452 1.19558 1.32978 0.85578 0.77934 0.78418 0.80195 1.19601 1.20655 1.19512 1.01214 0.72555 0.72163 0.73463 1.93565 1.42769 1.85283 1.77620 1.93503 1.67353 1.61032 1.77526 1.55447 1.61733 1.38013 1.30269 1.22248 0.92350 0.91980 0.93001 0.88993 1.23765 1.00099 0.99544 0.80993 1.88901 1.89851 1.27508 1.23880 1.24469 0.98792 0.82886 0.99746 1.23479 0.99620 0.83246 0.92069 0.88214 1.86478 1.83715 1.16354 1.50334 0.90884 0.90915 0.90890 0.95140 0.95937 0.92396 0.73733 0.90505 0.89221 0.90535 0.85538 0.74479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.91 10.68 127.77 1.36 4.28 16 2 N -1.00 -40.53 3.23 -543.24 -1.75 -42.29 16 3 C 0.27 13.30 5.10 85.63 0.44 13.74 16 4 C -0.55 -30.90 9.37 25.60 0.24 -30.66 16 5 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 6 C 0.01 0.81 5.46 84.65 0.46 1.27 16 7 N -0.92 -53.06 13.29 21.45 0.28 -52.78 16 8 Si 0.95 44.58 29.54 68.60 2.03 46.61 16 9 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 10 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 11 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 12 S 2.80 111.52 6.10 -56.49 -0.34 111.17 16 13 O -1.01 -49.73 16.42 -128.00 -2.10 -51.83 16 14 O -1.01 -42.10 16.74 -128.00 -2.14 -44.25 16 15 N -1.09 -32.44 5.07 -165.26 -0.84 -33.28 16 16 C 0.11 3.20 3.69 45.99 0.17 3.37 16 17 H 0.09 3.08 7.42 -2.39 -0.02 3.07 16 18 C 0.03 0.95 7.51 72.36 0.54 1.49 16 19 O -0.38 -9.51 11.52 -148.98 -1.72 -11.23 16 20 C 0.02 0.30 7.45 72.67 0.54 0.84 16 21 C 0.08 1.52 4.43 31.90 0.14 1.67 16 22 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 23 O -0.56 -10.01 12.22 -148.98 -1.82 -11.83 16 24 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.07 2.27 7.02 -2.39 -0.02 2.25 16 26 H 0.07 2.45 8.07 -2.39 -0.02 2.43 16 27 H 0.03 1.49 8.12 -2.39 -0.02 1.47 16 28 H 0.02 1.18 7.42 -2.39 -0.02 1.16 16 29 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 30 H 0.43 10.64 8.19 -96.74 -0.79 9.84 16 31 H 0.08 2.02 7.93 -2.39 -0.02 2.00 16 32 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 33 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 34 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.40 2.81 9.12 -74.06 -0.68 2.13 16 Total: -1.00 -74.54 309.25 -4.86 -79.39 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -0.35 Total: 14.32 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: 3.90 Total: -4.01 kcal Atomic # 7 Polarization: -126.04 SS G_CDS: -2.31 Total: -128.34 kcal Atomic # 8 Polarization: -111.36 SS G_CDS: -7.78 Total: -119.14 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Atomic # 16 Polarization: 111.52 SS G_CDS: -0.34 Total: 111.17 kcal Total: -74.54 -4.86 -79.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670788103.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.768 kcal (2) G-P(sol) polarization free energy of solvation -74.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds