Wall clock time and date at job start Tue Mar 31 2020 01:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 120.00210 * 2 1 4 4 H 1.48500 * 109.46997 * 269.99529 * 3 2 1 5 5 H 1.48504 * 109.47004 * 29.99539 * 3 2 1 6 6 H 1.48496 * 109.47075 * 149.99559 * 3 2 1 7 7 C 1.37874 * 119.99942 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99931 * 0.02562 * 7 2 1 9 9 C 1.50705 * 120.00180 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.47020 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47110 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47621 * 179.97438 * 11 10 9 13 13 C 1.52990 * 109.47551 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.47192 * 179.97438 * 13 12 11 15 15 O 1.21258 * 120.00094 * 0.02562 * 14 13 12 16 16 C 1.47076 * 119.99738 * 180.02562 * 14 13 12 17 17 C 1.39910 * 120.18828 * 0.02562 * 16 14 13 18 18 C 1.37815 * 119.83913 * 179.97438 * 17 16 14 19 19 C 1.38469 * 120.21179 * 0.02562 * 18 17 16 20 20 C 1.38302 * 120.37723 * 0.02562 * 19 18 17 21 21 C 1.38092 * 120.15530 * 359.97438 * 20 19 18 22 22 Cl 1.73605 * 120.10441 * 180.02562 * 21 20 19 23 23 H 0.97007 * 120.00020 * 0.02562 * 1 2 3 24 24 H 1.08990 * 109.46873 * 60.00441 * 9 7 2 25 25 H 1.08997 * 109.47001 * 300.00253 * 9 7 2 26 26 H 1.08996 * 109.47731 * 59.99995 * 10 9 7 27 27 H 1.08997 * 109.47033 * 299.99735 * 10 9 7 28 28 H 1.09006 * 109.47259 * 59.99761 * 11 10 9 29 29 H 1.09002 * 109.46881 * 300.00213 * 11 10 9 30 30 H 1.09006 * 109.46674 * 59.99802 * 12 11 10 31 31 H 1.09005 * 109.47171 * 300.00656 * 12 11 10 32 32 H 1.09006 * 109.46971 * 60.00379 * 13 12 11 33 33 H 1.09000 * 109.47739 * 300.00224 * 13 12 11 34 34 H 1.08003 * 120.07759 * 0.25656 * 17 16 14 35 35 H 1.07999 * 119.89012 * 179.97438 * 18 17 16 36 36 H 1.08004 * 119.81077 * 179.97438 * 19 18 17 37 37 H 1.08003 * 119.91911 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0044 -1.1940 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0214 -2.6366 0.0010 11 6 5.5514 -2.6367 0.0022 12 6 6.0614 -4.0792 0.0028 13 6 7.5913 -4.0792 0.0033 14 6 8.0936 -5.5001 0.0045 15 8 7.3056 -6.4217 0.0043 16 6 9.5396 -5.7688 0.0058 17 6 10.4523 -4.7084 0.0065 18 6 11.8057 -4.9684 0.0083 19 6 12.2641 -6.2750 0.0088 20 6 11.3698 -7.3300 0.0070 21 6 10.0104 -7.0871 0.0053 22 17 8.8890 -8.4123 0.0037 23 1 -0.4850 0.8401 -0.0004 24 1 3.8744 -0.6802 0.8911 25 1 3.8752 -0.6804 -0.8888 26 1 3.6585 -3.1503 -0.8892 27 1 3.6577 -3.1506 0.8907 28 1 5.9141 -2.1232 0.8927 29 1 5.9155 -2.1225 -0.8873 30 1 5.6987 -4.5930 -0.8875 31 1 5.6973 -4.5930 0.8925 32 1 7.9543 -3.5652 0.8934 33 1 7.9551 -3.5656 -0.8866 34 1 10.0970 -3.6885 0.0103 35 1 12.5109 -4.1505 0.0084 36 1 13.3261 -6.4714 0.0098 37 1 11.7355 -8.3462 0.0079 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002392821.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:46 Heat of formation + Delta-G solvation = -59.899392 kcal Electronic energy + Delta-G solvation = -18177.551063 eV Core-core repulsion = 15137.181218 eV Total energy + Delta-G solvation = -3040.369845 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.097 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.10689 -39.29406 -37.42451 -37.06225 -34.99700 -33.34756 -32.31583 -31.67871 -29.39952 -26.31853 -24.55658 -23.51479 -22.31746 -21.72547 -20.57889 -18.88043 -18.33284 -16.96959 -16.92868 -16.74604 -16.31257 -15.84724 -15.49224 -15.22384 -14.89746 -14.75365 -14.64959 -13.97938 -13.91990 -13.37300 -13.10477 -12.98106 -12.83561 -12.53819 -12.47861 -12.41827 -12.14439 -12.01475 -11.77235 -11.66991 -11.35330 -11.26383 -11.18607 -10.75508 -10.34112 -10.07999 -9.78675 -8.28702 -6.33675 -0.43182 0.19867 1.14120 1.37043 1.40209 1.43770 1.52767 2.38247 2.68767 2.93855 3.06479 3.69989 3.95117 4.03235 4.07113 4.10506 4.30938 4.31206 4.46865 4.47020 4.58950 4.64339 4.83501 4.89971 4.90457 5.03776 5.06938 5.17215 5.21327 5.25135 5.31770 5.38845 5.41215 5.62487 5.68548 5.70356 5.77350 6.30480 6.57802 6.75108 7.31080 8.88746 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.033520 B = 0.002688 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.116512 B =10413.911296 C =11212.674929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.004 4.004 3 Si 0.960 3.040 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.240 1.240 7 C -0.539 4.539 8 H 0.022 0.978 9 C -0.012 4.012 10 C -0.102 4.102 11 C -0.108 4.108 12 C -0.106 4.106 13 C -0.155 4.155 14 C 0.382 3.618 15 O -0.472 6.472 16 C -0.186 4.186 17 C -0.058 4.058 18 C -0.126 4.126 19 C -0.071 4.071 20 C -0.135 4.135 21 C -0.016 4.016 22 Cl -0.066 7.066 23 H 0.266 0.734 24 H 0.023 0.977 25 H 0.022 0.978 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.168 0.832 35 H 0.169 0.831 36 H 0.168 0.832 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.960 -10.034 0.035 35.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.200 4.200 3 Si 0.783 3.217 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.163 1.163 7 C -0.577 4.577 8 H 0.041 0.959 9 C -0.049 4.049 10 C -0.140 4.140 11 C -0.145 4.145 12 C -0.143 4.143 13 C -0.192 4.192 14 C 0.261 3.739 15 O -0.349 6.349 16 C -0.187 4.187 17 C -0.076 4.076 18 C -0.143 4.143 19 C -0.089 4.089 20 C -0.154 4.154 21 C -0.043 4.043 22 Cl -0.037 7.037 23 H 0.075 0.925 24 H 0.042 0.958 25 H 0.040 0.960 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.186 0.814 35 H 0.187 0.813 36 H 0.186 0.814 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 33.288 -10.552 0.039 34.920 hybrid contribution -0.984 0.033 -0.022 0.985 sum 32.304 -10.518 0.017 33.973 Atomic orbital electron populations 1.70101 1.08576 1.28241 1.52819 1.26186 0.95744 1.04079 0.93973 0.85512 0.79554 0.77330 0.79347 1.18940 1.21057 1.16330 1.21618 0.92766 0.92871 1.50452 0.95921 1.19553 0.93330 0.95309 0.96697 1.21384 0.95948 0.96811 0.99837 1.21565 0.93886 0.96145 1.02929 1.21323 0.94694 0.96665 1.01657 1.22074 0.96108 0.94104 1.06928 1.22987 0.87853 0.92212 0.70856 1.90618 1.59211 1.48491 1.36549 1.20567 0.96034 0.93077 1.09066 1.21862 0.92937 0.99051 0.93716 1.21725 0.95617 0.98193 0.98788 1.21834 1.01332 0.91768 0.93987 1.21361 0.89892 1.02197 1.01938 1.21608 0.91954 0.88727 1.01965 1.98412 1.62630 1.46392 1.96285 0.92520 0.95838 0.95962 0.94312 0.94338 0.90844 0.90767 0.93214 0.93225 0.85707 0.85682 0.81449 0.81311 0.81405 0.83370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.08 13.96 21.45 0.30 -61.78 16 2 C 0.00 -0.24 5.47 84.65 0.46 0.23 16 3 Si 0.96 44.75 27.47 68.60 1.88 46.64 16 4 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 5 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 6 H -0.24 -10.15 6.54 99.48 0.65 -9.49 16 7 C -0.54 -32.61 9.66 25.60 0.25 -32.37 16 8 H 0.02 1.52 7.99 -2.91 -0.02 1.50 16 9 C -0.01 -0.55 4.04 29.85 0.12 -0.43 16 10 C -0.10 -4.15 5.15 30.59 0.16 -4.00 16 11 C -0.11 -3.11 5.21 30.59 0.16 -2.95 16 12 C -0.11 -2.80 4.50 30.59 0.14 -2.66 16 13 C -0.16 -2.77 4.31 29.85 0.13 -2.65 16 14 C 0.38 8.72 7.11 28.01 0.20 8.92 16 15 O -0.47 -14.70 13.61 -2.96 -0.04 -14.74 16 16 C -0.19 -3.39 5.87 -20.13 -0.12 -3.51 16 17 C -0.06 -0.59 9.47 22.57 0.21 -0.38 16 18 C -0.13 -0.81 10.03 22.22 0.22 -0.58 16 19 C -0.07 -0.51 10.04 22.34 0.22 -0.29 16 20 C -0.14 -1.74 9.82 22.25 0.22 -1.52 16 21 C -0.02 -0.30 6.36 22.66 0.14 -0.16 16 22 Cl -0.07 -1.63 26.03 -2.72 -0.07 -1.70 16 23 H 0.27 15.99 8.31 -92.70 -0.77 15.22 16 24 H 0.02 1.08 7.20 -2.39 -0.02 1.06 16 25 H 0.02 1.01 7.57 -2.39 -0.02 0.99 16 26 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 29 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.05 1.47 8.10 -2.38 -0.02 1.45 16 31 H 0.05 1.47 8.10 -2.38 -0.02 1.45 16 32 H 0.13 1.59 8.08 -2.38 -0.02 1.57 16 33 H 0.13 1.59 8.09 -2.39 -0.02 1.57 16 34 H 0.17 0.78 7.05 -2.91 -0.02 0.76 16 35 H 0.17 -0.01 8.06 -2.91 -0.02 -0.03 16 36 H 0.17 0.10 8.06 -2.91 -0.02 0.07 16 37 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16 Total: -1.00 -78.28 326.10 5.58 -72.70 By element: Atomic # 1 Polarization: 0.24 SS G_CDS: 0.99 Total: 1.22 kcal Atomic # 6 Polarization: -44.87 SS G_CDS: 2.52 Total: -42.35 kcal Atomic # 7 Polarization: -62.08 SS G_CDS: 0.30 Total: -61.78 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.04 Total: -14.74 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.88 Total: 46.64 kcal Atomic # 17 Polarization: -1.63 SS G_CDS: -0.07 Total: -1.70 kcal Total: -78.28 5.58 -72.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002392821.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.804 kcal (2) G-P(sol) polarization free energy of solvation -78.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds