Wall clock time and date at job start Tue Mar 31 2020 01:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86804 * 119.99574 * 2 1 4 4 H 1.48493 * 109.47235 * 239.99677 * 3 2 1 5 5 H 1.48497 * 109.47181 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46801 * 119.99833 * 3 2 1 7 7 C 1.37871 * 120.00139 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99666 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00262 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47359 * 180.02562 * 9 7 2 11 11 N 1.46896 * 109.47157 * 179.97438 * 10 9 7 12 12 C 1.47189 * 111.00108 * 63.37281 * 11 10 9 13 13 C 1.52988 * 108.72724 * 54.37148 * 12 11 10 14 14 N 1.46006 * 110.04680 * 50.29022 * 13 12 11 15 15 C 1.33720 * 122.92643 * 341.83905 * 14 13 12 16 16 O 1.21276 * 118.62478 * 181.68362 * 15 14 13 17 17 C 1.46910 * 111.00012 * 186.26544 * 11 10 9 18 18 H 1.09001 * 109.38308 * 166.77397 * 17 11 10 19 19 C 1.50697 * 109.38515 * 47.08910 * 17 11 10 20 20 C 1.33389 * 125.20523 * 105.64751 * 19 17 11 21 21 C 1.38419 * 114.92283 * 179.86069 * 20 19 17 22 22 C 1.33390 * 114.91933 * 0.42905 * 21 20 19 23 23 S 1.75882 * 109.59410 * 359.77222 * 22 21 20 24 24 H 0.96997 * 119.99970 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46730 * 300.00333 * 9 7 2 26 26 H 1.09003 * 109.47117 * 59.99843 * 9 7 2 27 27 H 1.08994 * 109.47096 * 300.00153 * 10 9 7 28 28 H 1.09003 * 109.47181 * 59.99826 * 10 9 7 29 29 H 1.08996 * 109.59644 * 174.13866 * 12 11 10 30 30 H 1.09002 * 109.59814 * 294.44530 * 12 11 10 31 31 H 1.08997 * 109.37631 * 170.46869 * 13 12 11 32 32 H 1.09006 * 109.37313 * 290.11481 * 13 12 11 33 33 H 0.96995 * 118.53930 * 161.86887 * 14 13 12 34 34 H 1.08001 * 122.53470 * 0.02562 * 20 19 17 35 35 H 1.08000 * 122.54111 * 180.20649 * 21 20 19 36 36 H 1.08002 * 125.20120 * 179.75220 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6966 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 6 2.2454 -3.6620 -0.0015 11 7 1.5110 -4.9342 -0.0020 12 6 0.7144 -5.0829 -1.2307 13 6 1.6373 -4.9086 -2.4384 14 7 2.8140 -5.7612 -2.2964 15 6 3.1961 -6.2835 -1.1262 16 8 4.2046 -6.9564 -1.0920 17 6 2.4284 -6.0718 0.1479 18 1 1.8560 -6.9701 0.3791 19 6 3.3923 -5.7923 1.2721 20 6 3.3488 -6.3559 2.4803 21 6 4.3430 -5.9455 3.3515 22 6 5.1886 -5.0419 2.8538 23 16 4.7421 -4.6674 1.1943 24 1 -0.4850 -0.8400 -0.0004 25 1 0.6242 -2.5574 0.8880 26 1 0.6248 -2.5563 -0.8920 27 1 2.8728 -3.6038 -0.8909 28 1 2.8715 -3.6046 0.8890 29 1 0.2630 -6.0746 -1.2559 30 1 -0.0680 -4.3244 -1.2532 31 1 1.1000 -5.1821 -3.3465 32 1 1.9515 -3.8670 -2.5061 33 1 3.3423 -5.9572 -3.0859 34 1 2.5964 -7.0797 2.7569 35 1 4.4257 -6.3252 4.3592 36 1 6.0201 -4.6065 3.3882 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072798921.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:53:05 Heat of formation + Delta-G solvation = 13.592254 kcal Electronic energy + Delta-G solvation = -20311.111442 eV Core-core repulsion = 17308.264892 eV Total energy + Delta-G solvation = -3002.846550 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.79068 -37.63565 -37.30679 -34.51759 -33.42726 -31.13843 -29.61608 -28.27376 -25.70133 -24.56200 -23.02825 -22.81902 -21.25587 -19.19620 -18.73674 -17.48865 -16.99617 -16.76693 -16.39770 -15.57103 -15.36499 -14.62744 -14.49267 -13.80458 -13.71274 -13.21722 -13.13819 -12.61283 -12.50979 -12.48670 -12.20254 -11.99759 -11.58396 -11.45129 -11.05643 -10.86157 -10.51171 -10.48027 -10.14462 -10.03567 -9.82896 -9.08539 -8.67945 -8.55285 -8.35770 -8.02402 -7.89853 -6.38767 -4.07954 1.15638 1.82692 2.22665 2.57191 2.87792 3.26747 3.42298 3.44162 3.62632 4.12113 4.52183 4.53580 4.68098 4.96391 5.08137 5.21740 5.31883 5.37344 5.39027 5.61878 5.71156 5.75305 5.89044 6.08313 6.19123 6.25175 6.42963 6.62050 6.65823 6.73360 7.02486 7.07736 7.25522 7.40251 7.56080 8.16540 8.18581 8.43496 8.85787 9.63521 11.02216 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.016249 B = 0.006735 C = 0.005468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.726632 B = 4156.270641 C = 5119.138553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.018 3.982 3 Si 1.065 2.935 4 H -0.288 1.288 5 H -0.282 1.282 6 H -0.287 1.287 7 C -0.601 4.601 8 H 0.048 0.952 9 C 0.021 3.979 10 C 0.041 3.959 11 N -0.518 5.518 12 C 0.038 3.962 13 C 0.067 3.933 14 N -0.717 5.717 15 C 0.490 3.510 16 O -0.543 6.543 17 C 0.141 3.859 18 H 0.125 0.875 19 C -0.160 4.160 20 C -0.119 4.119 21 C -0.139 4.139 22 C -0.222 4.222 23 S 0.140 5.860 24 H 0.269 0.731 25 H 0.017 0.983 26 H 0.008 0.992 27 H 0.031 0.969 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.109 0.891 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.398 0.602 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.472 -12.416 -0.251 13.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.186 4.186 3 Si 0.894 3.106 4 H -0.215 1.215 5 H -0.207 1.207 6 H -0.214 1.214 7 C -0.640 4.640 8 H 0.066 0.934 9 C -0.016 4.016 10 C -0.086 4.086 11 N -0.241 5.241 12 C -0.090 4.090 13 C -0.059 4.059 14 N -0.370 5.370 15 C 0.274 3.726 16 O -0.419 6.419 17 C 0.028 3.972 18 H 0.142 0.858 19 C -0.278 4.278 20 C -0.151 4.151 21 C -0.170 4.170 22 C -0.358 4.358 23 S 0.406 5.594 24 H 0.079 0.921 25 H 0.035 0.965 26 H 0.026 0.974 27 H 0.049 0.951 28 H 0.102 0.898 29 H 0.096 0.904 30 H 0.127 0.873 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.233 0.767 34 H 0.157 0.843 35 H 0.155 0.845 36 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 4.952 -10.091 -0.727 11.264 hybrid contribution 0.361 -2.590 0.015 2.615 sum 5.312 -12.680 -0.712 13.767 Atomic orbital electron populations 1.70787 1.06834 1.30615 1.46515 1.25772 0.96510 1.02524 0.93766 0.83592 0.74965 0.75506 0.76571 1.21501 1.20731 1.21386 1.21958 0.94275 0.91813 1.55949 0.93391 1.19174 0.94295 0.91618 0.96511 1.22833 0.97406 0.87449 1.00924 1.62886 1.23358 1.02130 1.35757 1.22590 0.96630 1.03593 0.86235 1.22211 0.86979 0.95921 1.00769 1.45579 1.29927 1.51246 1.10205 1.21129 0.85729 0.79330 0.86451 1.90729 1.25446 1.39522 1.86247 1.20293 0.90808 0.97521 0.88577 0.85781 1.23714 1.01157 1.04305 0.98664 1.19980 1.00446 1.02364 0.92273 1.20025 0.96082 0.99797 1.01115 1.25760 1.05689 1.04760 0.99630 1.84652 1.23356 1.40079 1.11310 0.92056 0.96464 0.97421 0.95119 0.89840 0.90352 0.87303 0.90103 0.89900 0.76662 0.84318 0.84468 0.82086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.16 13.65 55.43 0.76 -26.40 16 2 C 0.02 0.52 5.46 -17.82 -0.10 0.42 16 3 Si 1.07 24.95 29.90 -169.99 -5.08 19.87 16 4 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 6 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.60 -16.61 9.11 -34.44 -0.31 -16.92 16 8 H 0.05 1.32 7.74 -52.49 -0.41 0.92 16 9 C 0.02 0.52 4.14 -27.89 -0.12 0.41 16 10 C 0.04 0.83 3.25 -3.83 -0.01 0.82 16 11 N -0.52 -8.79 4.93 -229.46 -1.13 -9.92 16 12 C 0.04 0.53 5.58 -3.67 -0.02 0.51 16 13 C 0.07 0.87 6.43 -4.31 -0.03 0.84 16 14 N -0.72 -9.97 5.34 -61.06 -0.33 -10.30 16 15 C 0.49 8.01 6.42 -11.67 -0.07 7.94 16 16 O -0.54 -10.32 17.19 5.56 0.10 -10.23 16 17 C 0.14 2.24 2.87 -70.23 -0.20 2.04 16 18 H 0.12 1.71 8.10 -51.93 -0.42 1.28 16 19 C -0.16 -2.65 4.18 -36.00 -0.15 -2.80 16 20 C -0.12 -1.74 10.02 -41.21 -0.41 -2.16 16 21 C -0.14 -1.89 10.18 -41.21 -0.42 -2.31 16 22 C -0.22 -3.18 11.23 29.04 0.33 -2.85 16 23 S 0.14 2.38 19.69 -107.50 -2.12 0.26 16 24 H 0.27 7.94 7.22 -40.82 -0.29 7.64 16 25 H 0.02 0.45 8.01 -51.93 -0.42 0.04 16 26 H 0.01 0.19 6.47 -51.93 -0.34 -0.15 16 27 H 0.03 0.64 5.76 -51.93 -0.30 0.34 16 28 H 0.08 1.79 4.54 -34.36 -0.16 1.64 16 29 H 0.08 0.91 8.08 -51.93 -0.42 0.49 16 30 H 0.11 1.61 6.69 -51.93 -0.35 1.27 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.08 1.28 6.80 -51.93 -0.35 0.93 16 33 H 0.40 4.87 8.84 -40.82 -0.36 4.51 16 34 H 0.14 1.69 8.06 -52.49 -0.42 1.26 16 35 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 36 H 0.16 1.86 8.06 -52.49 -0.42 1.44 16 LS Contribution 301.48 15.07 4.54 4.54 Total: -1.00 -32.45 301.48 -9.08 -41.53 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -4.30 Total: 4.71 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: -1.52 Total: -14.07 kcal Atomic # 7 Polarization: -45.91 SS G_CDS: -0.70 Total: -46.62 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.10 Total: -10.23 kcal Atomic # 14 Polarization: 24.95 SS G_CDS: -5.08 Total: 19.87 kcal Atomic # 16 Polarization: 2.38 SS G_CDS: -2.12 Total: 0.26 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.45 -9.08 -41.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072798921.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.125 kcal (2) G-P(sol) polarization free energy of solvation -32.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds