Wall clock time and date at job start Tue Mar 31 2020 01:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99706 * 2 1 4 4 H 1.48508 * 109.47130 * 270.00436 * 3 2 1 5 5 H 1.48497 * 109.47469 * 30.00147 * 3 2 1 6 6 H 1.48501 * 109.47312 * 150.00594 * 3 2 1 7 7 C 1.37874 * 120.00293 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00275 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99833 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47293 * 180.02562 * 9 7 2 11 11 N 1.46502 * 109.47363 * 180.02562 * 10 9 7 12 12 C 1.34779 * 120.00105 * 180.02562 * 11 10 9 13 13 O 1.21605 * 119.99594 * 0.02562 * 12 11 10 14 14 C 1.47420 * 120.00082 * 179.97438 * 12 11 10 15 15 C 1.39975 * 120.60793 * 6.02256 * 14 12 11 16 16 C 1.38337 * 118.36837 * 180.26841 * 15 14 12 17 17 N 1.48015 * 120.24741 * 179.97438 * 16 15 14 18 18 O 1.21798 * 119.99951 * 180.02562 * 17 16 15 19 19 O 1.21799 * 119.99787 * 0.02951 * 17 16 15 20 20 C 1.38383 * 119.50762 * 0.02562 * 16 15 14 21 21 N 1.31848 * 121.21685 * 359.97438 * 20 16 15 22 22 C 1.32437 * 121.77412 * 0.02562 * 21 20 16 23 23 N 1.38266 * 119.82174 * 179.97438 * 22 21 20 24 24 H 0.97003 * 120.00137 * 359.97438 * 1 2 3 25 25 H 1.09010 * 109.47120 * 60.00538 * 9 7 2 26 26 H 1.08994 * 109.47804 * 300.00624 * 9 7 2 27 27 H 1.08997 * 109.47010 * 60.00377 * 10 9 7 28 28 H 1.09004 * 109.47369 * 300.00423 * 10 9 7 29 29 H 0.96997 * 120.00267 * 0.02562 * 11 10 9 30 30 H 1.07996 * 120.81948 * 0.25139 * 15 14 12 31 31 H 1.07992 * 119.38852 * 179.97438 * 20 16 15 32 32 H 0.96998 * 119.99936 * 203.11539 * 23 22 21 33 33 H 0.97001 * 120.00230 * 23.11122 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4964 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 7 1.5128 -4.9308 -0.0012 12 6 2.1868 -6.0980 -0.0007 13 8 3.4028 -6.0979 0.0006 14 6 1.4497 -7.3747 -0.0008 15 6 0.0558 -7.3929 -0.1277 16 6 -0.5893 -8.6166 -0.1163 17 7 -2.0621 -8.6843 -0.2470 18 8 -2.6254 -9.7641 -0.2360 19 8 -2.7106 -7.6602 -0.3656 20 6 0.1526 -9.7770 0.0191 21 7 1.4652 -9.7389 0.1374 22 6 2.1330 -8.5953 0.1328 23 7 3.5097 -8.6024 0.2601 24 1 -0.4850 0.8401 0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6247 -2.5571 0.8895 27 1 2.8719 -3.6043 0.8895 28 1 2.8721 -3.6042 -0.8905 29 1 0.5429 -4.9308 -0.0019 30 1 -0.5024 -6.4743 -0.2316 31 1 -0.3530 -10.7312 0.0281 32 1 3.9705 -7.8146 0.5887 33 1 4.0149 -9.3952 0.0209 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352103753.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:35 Heat of formation + Delta-G solvation = -5.916184 kcal Electronic energy + Delta-G solvation = -20817.496174 eV Core-core repulsion = 17267.510460 eV Total energy + Delta-G solvation = -3549.985714 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.100 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.34059 -41.10309 -39.13576 -36.64382 -35.90251 -34.83111 -33.56036 -32.83356 -31.07788 -29.54043 -26.35547 -25.65907 -24.60207 -23.01196 -21.37497 -20.92677 -19.50007 -18.96517 -18.23492 -17.69286 -17.62067 -17.08267 -16.56658 -16.08513 -15.40926 -15.19874 -14.59626 -14.58112 -14.32746 -13.92587 -13.45562 -13.25550 -12.38618 -11.69477 -11.67473 -11.59576 -11.33905 -11.21959 -11.13698 -10.74412 -10.67444 -10.64486 -10.49169 -10.09133 -9.67207 -9.36811 -8.98027 -8.67716 -8.48627 -6.16929 -4.21057 -0.33762 0.13159 1.13533 1.22216 2.51121 2.83003 3.17188 3.24270 3.25898 3.31351 3.34827 3.81159 3.93089 4.07890 4.26631 4.35482 4.80625 4.91013 5.10764 5.20238 5.42609 6.09003 6.13610 6.20448 6.39881 6.56432 6.68567 6.75179 7.36272 7.43951 7.47434 7.53807 7.61559 7.79456 8.09944 8.22664 8.84359 9.44563 10.94459 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.020372 B = 0.003766 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.084521 B = 7433.569037 C = 8782.160630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.526 4.526 8 H 0.060 0.940 9 C 0.011 3.989 10 C 0.120 3.880 11 N -0.707 5.707 12 C 0.566 3.434 13 O -0.548 6.548 14 C -0.245 4.245 15 C 0.060 3.940 16 C -0.169 4.169 17 N 0.046 4.954 18 O -0.169 6.169 19 O -0.162 6.162 20 C 0.251 3.749 21 N -0.532 5.532 22 C 0.487 3.513 23 N -0.804 5.804 24 H 0.264 0.736 25 H 0.024 0.976 26 H 0.024 0.976 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.399 0.601 30 H 0.168 0.832 31 H 0.188 0.812 32 H 0.431 0.569 33 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.800 -19.098 0.414 19.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.564 4.564 8 H 0.078 0.922 9 C -0.027 4.027 10 C -0.001 4.001 11 N -0.355 5.355 12 C 0.352 3.648 13 O -0.429 6.429 14 C -0.257 4.257 15 C 0.034 3.966 16 C -0.260 4.260 17 N 0.562 4.438 18 O -0.382 6.382 19 O -0.377 6.377 20 C 0.085 3.915 21 N -0.250 5.250 22 C 0.244 3.756 23 N -0.350 5.350 24 H 0.073 0.927 25 H 0.043 0.957 26 H 0.042 0.958 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.234 0.766 30 H 0.185 0.815 31 H 0.205 0.795 32 H 0.273 0.727 33 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 3.793 -19.548 0.594 19.921 hybrid contribution -0.628 1.651 -0.118 1.770 sum 3.165 -17.897 0.476 18.181 Atomic orbital electron populations 1.69946 1.06093 1.27074 1.49844 1.24991 0.94894 0.99454 0.94823 0.86505 0.79801 0.82956 0.78249 1.20511 1.21090 1.19741 1.20988 0.93196 0.90235 1.52010 0.92213 1.19355 0.94177 0.91012 0.98126 1.21889 0.96204 0.80747 1.01290 1.46288 1.10801 1.06466 1.71961 1.17554 0.86978 0.83020 0.77292 1.90553 1.13053 1.86733 1.52513 1.20472 0.92995 0.95183 1.17006 1.21492 0.92971 0.97844 0.84320 1.21737 0.81428 0.97538 1.25261 1.43231 1.02694 1.00534 0.97300 1.94524 1.72069 1.16946 1.54646 1.94593 1.65029 1.24716 1.53317 1.22657 0.88035 0.97615 0.83206 1.67838 1.07712 1.26838 1.22638 1.18580 0.86836 0.87544 0.82664 1.43027 1.02226 1.21931 1.67826 0.92683 0.95730 0.95753 0.91950 0.91951 0.76568 0.81458 0.79473 0.72652 0.76133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.38 13.29 55.43 0.74 -24.64 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.53 -13.95 9.11 -34.44 -0.31 -14.26 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.01 0.25 5.09 -27.89 -0.14 0.11 16 10 C 0.12 2.30 5.61 -4.04 -0.02 2.28 16 11 N -0.71 -10.89 5.51 -61.38 -0.34 -11.23 16 12 C 0.57 8.22 7.74 -12.52 -0.10 8.12 16 13 O -0.55 -8.93 13.83 5.27 0.07 -8.85 16 14 C -0.24 -2.90 5.91 -104.65 -0.62 -3.52 16 15 C 0.06 0.65 9.11 -38.89 -0.35 0.30 16 16 C -0.17 -1.83 6.87 -79.86 -0.55 -2.38 16 17 N 0.05 0.58 4.45 34.01 0.15 0.73 16 18 O -0.17 -2.14 18.45 -29.46 -0.54 -2.68 16 19 O -0.16 -2.29 18.50 -29.46 -0.55 -2.83 16 20 C 0.25 2.31 10.70 -17.49 -0.19 2.12 16 21 N -0.53 -5.31 10.38 -12.20 -0.13 -5.44 16 22 C 0.49 5.27 7.76 -155.18 -1.20 4.06 16 23 N -0.80 -7.42 8.57 31.27 0.27 -7.15 16 24 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 25 H 0.02 0.60 8.14 -51.92 -0.42 0.18 16 26 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.40 5.39 6.61 -40.82 -0.27 5.12 16 30 H 0.17 1.67 6.18 -52.49 -0.32 1.34 16 31 H 0.19 1.23 7.59 -52.49 -0.40 0.83 16 32 H 0.43 4.47 6.04 -40.82 -0.25 4.23 16 33 H 0.41 2.73 8.95 -40.82 -0.37 2.36 16 LS Contribution 301.20 15.07 4.54 4.54 Total: -1.00 -30.38 301.20 -7.23 -37.60 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -2.84 Total: 5.82 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -3.58 Total: -1.60 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: 0.69 Total: -47.72 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: -1.02 Total: -14.37 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.38 -7.23 -37.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352103753.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.687 kcal (2) G-P(sol) polarization free energy of solvation -30.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds