Wall clock time and date at job start Tue Mar 31 2020 01:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86800 * 119.99876 * 2 1 4 4 H 1.48501 * 109.47065 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47381 * 299.99927 * 3 2 1 6 6 H 1.48505 * 109.46972 * 60.00066 * 3 2 1 7 7 C 1.37884 * 120.00372 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00101 * 187.73893 * 7 2 1 9 9 C 1.50696 * 119.99439 * 7.73612 * 7 2 1 10 10 C 1.53000 * 115.55474 * 275.27711 * 9 7 2 11 11 N 1.46503 * 109.47183 * 279.19752 * 10 9 7 12 12 C 1.39840 * 120.00090 * 184.89033 * 11 10 9 13 13 C 1.38827 * 120.07916 * 354.98154 * 12 11 10 14 14 C 1.38153 * 119.94851 * 179.97438 * 13 12 11 15 15 C 1.38270 * 120.11339 * 0.27750 * 14 13 12 16 16 N 1.48011 * 119.92023 * 179.70617 * 15 14 13 17 17 O 1.21799 * 119.99803 * 359.97438 * 16 15 14 18 18 O 1.21801 * 119.99774 * 180.02562 * 16 15 14 19 19 C 1.38288 * 120.15866 * 359.44604 * 15 14 13 20 20 C 1.38280 * 120.05049 * 0.55350 * 19 15 14 21 21 F 1.35097 * 120.05847 * 179.70411 * 20 19 15 22 22 C 1.53006 * 117.51955 * 60.98444 * 9 7 2 23 23 C 1.53002 * 60.00070 * 107.47502 * 22 9 7 24 24 H 0.96995 * 120.00270 * 4.99856 * 1 2 3 25 25 H 1.08995 * 109.47290 * 159.19317 * 10 9 7 26 26 H 1.08999 * 109.47021 * 39.19306 * 10 9 7 27 27 H 0.97003 * 119.99867 * 4.88529 * 11 10 9 28 28 H 1.08004 * 120.02642 * 359.95495 * 13 12 11 29 29 H 1.07999 * 119.94489 * 179.97438 * 14 13 12 30 30 H 1.07997 * 119.97494 * 180.30426 * 19 15 14 31 31 H 1.09000 * 117.49835 * 214.96686 * 22 9 7 32 32 H 1.09001 * 117.49619 * 359.97438 * 22 9 7 33 33 H 1.08999 * 117.49686 * 252.50838 * 23 22 9 34 34 H 1.08999 * 117.51806 * 107.48015 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3464 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8902 2.3964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0772 -1.1982 0.1265 9 6 1.2613 -2.4932 -0.1746 10 6 0.6661 -3.0904 1.1022 11 7 1.7116 -3.8015 1.8422 12 6 1.3855 -4.5201 2.9966 13 6 0.0931 -4.4761 3.5018 14 6 -0.2262 -5.1875 4.6422 15 6 0.7406 -5.9387 5.2847 16 7 0.3954 -6.6939 6.5099 17 8 -0.7391 -6.6528 6.9513 18 8 1.2461 -7.3557 7.0773 19 6 2.0280 -5.9903 4.7823 20 6 2.3550 -5.2809 3.6413 21 9 3.6141 -5.3265 3.1537 22 6 0.4836 -2.6928 -1.4770 23 6 1.7808 -3.4669 -1.2344 24 1 -0.4850 0.8368 -0.0732 25 1 -0.1311 -3.7861 0.8406 26 1 0.2616 -2.2909 1.7229 27 1 2.6300 -3.7740 1.5312 28 1 -0.6620 -3.8860 3.0038 29 1 -1.2315 -5.1529 5.0354 30 1 2.7796 -6.5819 5.2838 31 1 -0.4521 -3.2494 -1.4242 32 1 0.5091 -1.8840 -2.2074 33 1 2.6598 -3.1676 -1.8052 34 1 1.6989 -4.5329 -1.0218 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362364086.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:44 Heat of formation + Delta-G solvation = -13.994893 kcal Electronic energy + Delta-G solvation = -21093.362815 eV Core-core repulsion = 17523.106820 eV Total energy + Delta-G solvation = -3570.255995 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.101 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.04209 -43.11608 -40.58073 -38.82038 -37.56078 -36.17399 -34.03519 -32.03327 -31.54671 -28.41268 -27.42342 -26.09443 -24.15643 -23.17546 -22.75981 -21.19582 -20.44096 -19.76300 -18.75515 -18.51176 -18.09511 -17.59661 -17.33304 -16.90255 -16.65186 -15.93889 -15.56828 -15.40308 -14.76428 -14.63800 -14.45221 -13.95263 -13.57731 -13.42339 -13.08705 -12.89978 -12.81030 -12.56579 -12.40353 -12.21108 -12.18405 -12.06815 -11.69723 -11.52413 -10.74566 -10.50707 -10.30938 -10.14210 -8.80977 -8.18007 -6.27977 -1.08802 -0.15967 0.39755 0.48059 1.36985 1.43719 1.50363 2.08726 2.20277 2.39470 2.88976 3.12732 3.33165 3.46170 3.61697 3.72919 4.08453 4.17654 4.23303 4.50027 4.54369 4.66299 4.70233 4.71369 4.81079 4.87340 4.96706 5.16811 5.23985 5.43567 5.56401 5.59668 5.72801 5.95718 6.31937 6.44058 6.62949 6.78434 7.42089 8.89951 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.023875 B = 0.004003 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.484723 B = 6993.272655 C = 7143.296098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.036 3.964 3 Si 0.937 3.063 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.285 1.285 7 C -0.510 4.510 8 H 0.051 0.949 9 C 0.002 3.998 10 C 0.169 3.831 11 N -0.693 5.693 12 C 0.248 3.752 13 C -0.180 4.180 14 C 0.007 3.993 15 C -0.111 4.111 16 N 0.048 4.952 17 O -0.185 6.185 18 O -0.200 6.200 19 C -0.032 4.032 20 C 0.007 3.993 21 F -0.133 7.133 22 C -0.152 4.152 23 C -0.184 4.184 24 H 0.261 0.739 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.410 0.590 28 H 0.165 0.835 29 H 0.174 0.826 30 H 0.171 0.829 31 H 0.082 0.918 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.386 -9.114 4.779 10.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.166 4.166 3 Si 0.764 3.236 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.212 1.212 7 C -0.548 4.548 8 H 0.069 0.931 9 C 0.002 3.998 10 C 0.046 3.954 11 N -0.313 5.313 12 C 0.132 3.868 13 C -0.204 4.204 14 C -0.014 4.014 15 C -0.198 4.198 16 N 0.558 4.442 17 O -0.397 6.397 18 O -0.408 6.408 19 C -0.053 4.053 20 C -0.018 4.018 21 F -0.112 7.112 22 C -0.190 4.190 23 C -0.221 4.221 24 H 0.071 0.929 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.246 0.754 28 H 0.182 0.818 29 H 0.192 0.808 30 H 0.188 0.812 31 H 0.101 0.899 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.303 -8.503 4.100 9.445 hybrid contribution 0.938 1.029 -0.093 1.395 sum 1.240 -7.474 4.007 8.571 Atomic orbital electron populations 1.70046 1.06621 1.27525 1.49215 1.25476 0.95429 1.01282 0.94363 0.85841 0.79319 0.81045 0.77416 1.19662 1.20834 1.21154 1.20674 0.92915 0.90376 1.50820 0.93116 1.19064 0.99759 0.94145 0.86870 1.21081 0.88224 0.93420 0.92659 1.45332 1.12648 1.49666 1.23638 1.18550 0.93645 0.88131 0.86447 1.20696 0.95189 1.05774 0.98690 1.20958 0.99858 0.89008 0.91559 1.20393 0.97189 1.09610 0.92630 1.43587 0.99979 0.98855 1.01750 1.94495 1.06789 1.69326 1.69081 1.94501 1.44363 1.40942 1.60992 1.20576 0.95552 0.96150 0.93035 1.16612 0.80512 1.06488 0.98174 1.91500 1.36711 1.95624 1.87344 1.22485 0.94130 1.01073 1.01285 1.22967 0.97481 0.96433 1.05201 0.92941 0.91792 0.92592 0.75391 0.81795 0.80815 0.81180 0.89943 0.92100 0.90437 0.89055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -45.49 12.99 21.45 0.28 -45.21 16 2 C 0.04 1.78 5.38 84.66 0.46 2.23 16 3 Si 0.94 39.94 29.55 68.60 2.03 41.96 16 4 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 5 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 6 H -0.29 -12.19 7.11 99.48 0.71 -11.48 16 7 C -0.51 -24.28 8.82 25.60 0.23 -24.05 16 8 H 0.05 2.46 7.83 -2.91 -0.02 2.44 16 9 C 0.00 0.10 1.33 -52.92 -0.07 0.03 16 10 C 0.17 5.88 4.82 86.38 0.42 6.30 16 11 N -0.69 -20.90 5.68 -339.20 -1.93 -22.82 16 12 C 0.25 6.54 6.66 38.21 0.25 6.79 16 13 C -0.18 -4.17 9.30 22.39 0.21 -3.96 16 14 C 0.01 0.14 9.55 22.26 0.21 0.36 16 15 C -0.11 -2.73 6.85 36.40 0.25 -2.48 16 16 N 0.05 1.36 4.45 -46.42 -0.21 1.15 16 17 O -0.19 -5.38 18.44 18.89 0.35 -5.03 16 18 O -0.20 -5.96 18.44 18.89 0.35 -5.61 16 19 C -0.03 -0.76 9.53 22.29 0.21 -0.55 16 20 C 0.01 0.18 7.31 22.48 0.16 0.34 16 21 F -0.13 -3.54 16.65 44.97 0.75 -2.79 16 22 C -0.15 -5.97 9.45 30.60 0.29 -5.68 16 23 C -0.18 -6.47 9.91 30.60 0.30 -6.17 16 24 H 0.26 12.84 8.32 -92.71 -0.77 12.07 16 25 H 0.06 1.99 7.71 -2.39 -0.02 1.97 16 26 H 0.06 2.23 7.97 -2.39 -0.02 2.21 16 27 H 0.41 12.63 7.98 -92.71 -0.74 11.89 16 28 H 0.16 3.58 6.76 -2.91 -0.02 3.56 16 29 H 0.17 3.05 7.60 -2.91 -0.02 3.03 16 30 H 0.17 3.53 7.60 -2.91 -0.02 3.50 16 31 H 0.08 2.94 8.08 -2.39 -0.02 2.92 16 32 H 0.06 2.67 8.14 -2.39 -0.02 2.66 16 33 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 34 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 Total: -1.00 -51.87 310.69 4.95 -46.92 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: 0.41 Total: 18.26 kcal Atomic # 6 Polarization: -29.76 SS G_CDS: 2.92 Total: -26.84 kcal Atomic # 7 Polarization: -65.02 SS G_CDS: -1.86 Total: -66.88 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.70 Total: -10.64 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 0.75 Total: -2.79 kcal Atomic # 14 Polarization: 39.94 SS G_CDS: 2.03 Total: 41.96 kcal Total: -51.87 4.95 -46.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362364086.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.927 kcal (2) G-P(sol) polarization free energy of solvation -51.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds