Wall clock time and date at job start Tue Mar 31 2020 01:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86797 * 120.00013 * 2 1 4 4 H 1.48496 * 109.47294 * 269.99881 * 3 2 1 5 5 H 1.48495 * 109.47239 * 30.00137 * 3 2 1 6 6 H 1.48507 * 109.47294 * 150.00197 * 3 2 1 7 7 C 1.37875 * 119.99873 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00096 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00111 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47382 * 179.97438 * 9 7 2 11 11 S 1.81393 * 109.47579 * 179.97438 * 10 9 7 12 12 C 1.81401 * 103.00287 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.46926 * 180.02562 * 12 11 10 14 14 C 1.38224 * 120.41799 * 90.00084 * 13 12 11 15 15 C 1.39376 * 118.35246 * 179.97438 * 14 13 12 16 16 O 1.35525 * 120.51067 * 179.97438 * 15 14 13 17 17 N 1.32818 * 118.97703 * 0.27485 * 15 14 13 18 18 C 1.31766 * 120.71740 * 359.44076 * 17 15 14 19 19 C 1.50703 * 119.09559 * 180.29180 * 18 17 15 20 20 C 1.53003 * 117.49729 * 9.01819 * 19 18 17 21 21 C 1.53008 * 117.49548 * 300.36355 * 19 18 17 22 22 N 1.31784 * 121.81299 * 0.57248 * 18 17 15 23 23 H 0.96997 * 120.00278 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47188 * 60.00531 * 9 7 2 25 25 H 1.08997 * 109.47305 * 299.99962 * 9 7 2 26 26 H 1.09006 * 109.46883 * 59.99948 * 10 9 7 27 27 H 1.09002 * 109.47328 * 300.00470 * 10 9 7 28 28 H 1.08993 * 109.47181 * 59.99832 * 12 11 10 29 29 H 1.09004 * 109.46583 * 299.99640 * 12 11 10 30 30 H 1.07997 * 120.82454 * 359.95238 * 14 13 12 31 31 H 0.96701 * 113.99668 * 90.00674 * 16 15 14 32 32 H 1.08993 * 115.55245 * 154.69299 * 19 18 17 33 33 H 1.09003 * 117.49969 * 0.02562 * 20 19 18 34 34 H 1.09000 * 117.49695 * 145.01848 * 20 19 18 35 35 H 1.09003 * 117.49609 * 214.97615 * 21 19 18 36 36 H 1.09004 * 117.49800 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0018 11 16 1.3382 -5.2331 -0.0011 12 6 2.6649 -6.4702 -0.0019 13 6 2.0632 -7.8519 -0.0020 14 6 1.7833 -8.4932 -1.1941 15 6 1.2277 -9.7705 -1.1439 16 8 0.9355 -10.4390 -2.2860 17 7 0.9836 -10.3199 0.0404 18 6 1.2708 -9.6756 1.1533 19 6 0.9845 -10.3363 2.4772 20 6 0.5689 -11.8086 2.4568 21 6 -0.4653 -10.7255 2.7736 22 7 1.7965 -8.4673 1.1406 23 1 -0.4850 0.8400 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8896 26 1 2.8725 -3.6048 0.8878 27 1 2.8712 -3.6040 -0.8922 28 1 3.2817 -6.3422 0.8875 29 1 3.2803 -6.3423 -0.8925 30 1 1.9897 -8.0163 -2.1408 31 1 1.6607 -10.9855 -2.6184 32 1 1.5956 -9.9974 3.3136 33 1 0.5030 -12.2996 1.4858 34 1 0.9065 -12.4383 3.2800 35 1 -0.8077 -10.6431 3.8052 36 1 -1.2120 -10.5033 2.0112 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000419585555.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:47 Heat of formation + Delta-G solvation = 21.028203 kcal Electronic energy + Delta-G solvation = -18159.487001 eV Core-core repulsion = 15156.962898 eV Total energy + Delta-G solvation = -3002.524103 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.46898 -38.17459 -37.16343 -34.04745 -33.71612 -31.92227 -30.90739 -28.70583 -25.49302 -25.27557 -23.37641 -22.56060 -21.43465 -20.75777 -19.11013 -17.92197 -16.58576 -16.51142 -16.02113 -15.64455 -15.40253 -14.88474 -14.60677 -14.49161 -13.99135 -13.65080 -13.23475 -12.99687 -12.47487 -12.33144 -12.09416 -11.72559 -11.58651 -11.05040 -11.03257 -10.90965 -10.74023 -10.66068 -10.49687 -10.23615 -9.74088 -9.66358 -9.48174 -9.29501 -9.09867 -8.44579 -7.23593 -6.08210 -4.13230 0.56287 0.64680 2.11104 2.99324 3.09902 3.27752 3.28332 3.34344 3.37204 3.49370 3.89646 4.01820 4.39867 4.60020 4.62237 4.74548 4.77222 4.88442 4.93367 5.27404 5.27769 5.42997 5.44484 5.46625 5.59978 5.86748 5.93473 5.95845 6.01589 6.11628 6.66875 6.76971 7.06554 7.53226 7.61203 7.87474 7.89834 8.24007 8.91665 9.50855 11.02602 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.029592 B = 0.002938 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.981504 B = 9527.081305 C =10004.288110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.522 4.522 8 H 0.058 0.942 9 C 0.037 3.963 10 C -0.060 4.060 11 S -0.255 6.255 12 C -0.055 4.055 13 C 0.221 3.779 14 C -0.233 4.233 15 C 0.364 3.636 16 O -0.474 6.474 17 N -0.541 5.541 18 C 0.376 3.624 19 C -0.102 4.102 20 C -0.154 4.154 21 C -0.153 4.153 22 N -0.507 5.507 23 H 0.263 0.737 24 H 0.027 0.973 25 H 0.027 0.973 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.104 0.896 29 H 0.100 0.900 30 H 0.156 0.844 31 H 0.406 0.594 32 H 0.133 0.867 33 H 0.109 0.891 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.091 -23.271 0.449 23.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.562 4.562 8 H 0.076 0.924 9 C -0.001 4.001 10 C -0.208 4.208 11 S -0.027 6.027 12 C -0.203 4.203 13 C 0.075 3.925 14 C -0.258 4.258 15 C 0.177 3.823 16 O -0.281 6.281 17 N -0.267 5.267 18 C 0.109 3.891 19 C -0.122 4.122 20 C -0.192 4.192 21 C -0.191 4.191 22 N -0.223 5.223 23 H 0.073 0.927 24 H 0.045 0.955 25 H 0.046 0.954 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.122 0.878 29 H 0.119 0.881 30 H 0.174 0.826 31 H 0.265 0.735 32 H 0.151 0.849 33 H 0.127 0.873 34 H 0.119 0.881 35 H 0.123 0.877 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.139 -23.478 1.261 23.721 hybrid contribution 2.284 1.366 -1.067 2.867 sum 5.423 -22.112 0.194 22.768 Atomic orbital electron populations 1.69968 1.06095 1.26939 1.49843 1.25016 0.94903 0.99341 0.95005 0.86508 0.79757 0.83062 0.78175 1.20545 1.21076 1.19792 1.21073 0.93004 0.90141 1.51957 0.92381 1.18910 0.93420 0.89147 0.98650 1.23780 1.01570 0.92001 1.03457 1.87279 1.14999 1.02351 1.98063 1.22210 1.00261 0.91126 1.06664 1.20802 0.90086 0.94013 0.87571 1.22765 1.04285 0.97306 1.01481 1.19295 0.88972 0.88730 0.85312 1.84751 1.43441 1.64483 1.35406 1.67575 1.20818 1.39787 0.98490 1.21876 0.88976 0.86267 0.91946 1.20660 1.00775 0.98185 0.92610 1.23038 1.02112 0.89939 1.04076 1.23015 0.90724 1.02294 1.03118 1.67950 1.14770 1.09390 1.30169 0.92725 0.95502 0.95425 0.91014 0.91092 0.87775 0.88119 0.82629 0.73481 0.84943 0.87308 0.88115 0.87679 0.88468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.58 13.28 55.43 0.74 -25.85 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.52 -14.46 9.11 -34.44 -0.31 -14.77 16 8 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 9 C 0.04 0.97 4.98 -27.88 -0.14 0.83 16 10 C -0.06 -1.23 5.88 37.16 0.22 -1.01 16 11 S -0.25 -4.72 21.72 -107.50 -2.33 -7.06 16 12 C -0.05 -0.76 6.27 36.00 0.23 -0.53 16 13 C 0.22 3.08 6.08 -82.31 -0.50 2.58 16 14 C -0.23 -2.84 9.81 -39.16 -0.38 -3.22 16 15 C 0.36 4.41 7.83 -16.70 -0.13 4.28 16 16 O -0.47 -4.54 13.58 -18.27 -0.25 -4.79 16 17 N -0.54 -7.08 9.38 -10.78 -0.10 -7.18 16 18 C 0.38 5.04 7.31 -157.23 -1.15 3.89 16 19 C -0.10 -1.08 6.23 -91.76 -0.57 -1.65 16 20 C -0.15 -1.28 10.01 -26.69 -0.27 -1.55 16 21 C -0.15 -1.41 10.24 -26.69 -0.27 -1.68 16 22 N -0.51 -7.47 10.27 -7.05 -0.07 -7.55 16 23 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 24 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.07 1.40 8.14 -51.92 -0.42 0.98 16 27 H 0.07 1.35 8.14 -51.92 -0.42 0.93 16 28 H 0.10 1.39 8.14 -51.93 -0.42 0.96 16 29 H 0.10 1.15 8.09 -51.92 -0.42 0.73 16 30 H 0.16 1.57 8.06 -52.49 -0.42 1.15 16 31 H 0.41 1.57 9.06 45.56 0.41 1.98 16 32 H 0.13 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.11 1.00 7.54 -51.93 -0.39 0.61 16 34 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 330.38 15.07 4.98 4.98 Total: -1.00 -33.00 330.38 -9.61 -42.61 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -4.17 Total: -0.17 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: -3.38 Total: -11.24 kcal Atomic # 7 Polarization: -41.13 SS G_CDS: 0.56 Total: -40.57 kcal Atomic # 8 Polarization: -4.54 SS G_CDS: -0.25 Total: -4.79 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -4.72 SS G_CDS: -2.33 Total: -7.06 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.00 -9.61 -42.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419585555.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.638 kcal (2) G-P(sol) polarization free energy of solvation -32.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds