Wall clock time and date at job start Tue Mar 31 2020 01:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86797 * 120.00013 * 2 1 4 4 H 1.48496 * 109.47294 * 269.99881 * 3 2 1 5 5 H 1.48495 * 109.47239 * 30.00137 * 3 2 1 6 6 H 1.48507 * 109.47294 * 150.00197 * 3 2 1 7 7 C 1.37875 * 119.99873 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00096 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00111 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47382 * 179.97438 * 9 7 2 11 11 S 1.81393 * 109.47579 * 179.97438 * 10 9 7 12 12 C 1.81401 * 103.00287 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.46926 * 180.02562 * 12 11 10 14 14 C 1.38224 * 120.41799 * 90.00084 * 13 12 11 15 15 C 1.39376 * 118.35246 * 179.97438 * 14 13 12 16 16 O 1.35525 * 120.51067 * 179.97438 * 15 14 13 17 17 N 1.32818 * 118.97703 * 0.27485 * 15 14 13 18 18 C 1.31766 * 120.71740 * 359.44076 * 17 15 14 19 19 C 1.50703 * 119.09559 * 180.29180 * 18 17 15 20 20 C 1.53003 * 117.49729 * 9.01819 * 19 18 17 21 21 C 1.53008 * 117.49548 * 300.36355 * 19 18 17 22 22 N 1.31784 * 121.81299 * 0.57248 * 18 17 15 23 23 H 0.96997 * 120.00278 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47188 * 60.00531 * 9 7 2 25 25 H 1.08997 * 109.47305 * 299.99962 * 9 7 2 26 26 H 1.09006 * 109.46883 * 59.99948 * 10 9 7 27 27 H 1.09002 * 109.47328 * 300.00470 * 10 9 7 28 28 H 1.08993 * 109.47181 * 59.99832 * 12 11 10 29 29 H 1.09004 * 109.46583 * 299.99640 * 12 11 10 30 30 H 1.07997 * 120.82454 * 359.95238 * 14 13 12 31 31 H 0.96701 * 113.99668 * 90.00674 * 16 15 14 32 32 H 1.08993 * 115.55245 * 154.69299 * 19 18 17 33 33 H 1.09003 * 117.49969 * 0.02562 * 20 19 18 34 34 H 1.09000 * 117.49695 * 145.01848 * 20 19 18 35 35 H 1.09003 * 117.49609 * 214.97615 * 21 19 18 36 36 H 1.09004 * 117.49800 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0018 11 16 1.3382 -5.2331 -0.0011 12 6 2.6649 -6.4702 -0.0019 13 6 2.0632 -7.8519 -0.0020 14 6 1.7833 -8.4932 -1.1941 15 6 1.2277 -9.7705 -1.1439 16 8 0.9355 -10.4390 -2.2860 17 7 0.9836 -10.3199 0.0404 18 6 1.2708 -9.6756 1.1533 19 6 0.9845 -10.3363 2.4772 20 6 0.5689 -11.8086 2.4568 21 6 -0.4653 -10.7255 2.7736 22 7 1.7965 -8.4673 1.1406 23 1 -0.4850 0.8400 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8896 26 1 2.8725 -3.6048 0.8878 27 1 2.8712 -3.6040 -0.8922 28 1 3.2817 -6.3422 0.8875 29 1 3.2803 -6.3423 -0.8925 30 1 1.9897 -8.0163 -2.1408 31 1 1.6607 -10.9855 -2.6184 32 1 1.5956 -9.9974 3.3136 33 1 0.5030 -12.2996 1.4858 34 1 0.9065 -12.4383 3.2800 35 1 -0.8077 -10.6431 3.8052 36 1 -1.2120 -10.5033 2.0112 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000419585555.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:46 Heat of formation + Delta-G solvation = -1.562954 kcal Electronic energy + Delta-G solvation = -18160.466627 eV Core-core repulsion = 15156.962898 eV Total energy + Delta-G solvation = -3003.503729 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.41117 -38.96805 -37.95729 -35.78290 -35.00004 -32.92179 -32.87117 -29.75409 -27.32286 -26.35836 -24.38195 -23.25439 -23.13946 -21.83124 -19.96684 -18.87382 -18.67307 -17.55236 -17.01717 -16.61242 -16.53243 -16.45481 -15.80626 -15.68797 -15.44883 -14.83056 -14.61640 -14.17002 -13.92022 -13.52907 -13.27789 -13.15687 -12.91415 -12.50884 -12.38159 -12.17021 -11.91445 -11.78552 -11.71768 -11.66157 -11.40360 -11.18369 -10.88597 -10.60860 -10.48568 -10.25463 -8.71352 -8.23175 -6.36882 -0.48063 -0.28964 0.83318 1.41881 1.43489 1.54654 1.63842 2.18768 2.39767 2.41394 2.58357 3.03268 3.10514 3.10906 3.70363 3.81813 3.90209 3.96857 4.07098 4.09875 4.27253 4.36951 4.41184 4.42476 4.54122 4.77255 4.86751 4.92601 5.09464 5.16834 5.29819 5.38270 5.48691 5.73642 5.81857 6.10134 6.47184 6.77950 6.93005 7.32917 8.88775 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.029592 B = 0.002938 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.981504 B = 9527.081305 C =10004.288110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.973 3.027 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.259 1.259 7 C -0.540 4.540 8 H 0.071 0.929 9 C 0.043 3.957 10 C -0.046 4.046 11 S -0.296 6.296 12 C -0.034 4.034 13 C 0.203 3.797 14 C -0.231 4.231 15 C 0.366 3.634 16 O -0.476 6.476 17 N -0.550 5.550 18 C 0.365 3.635 19 C -0.122 4.122 20 C -0.134 4.134 21 C -0.154 4.154 22 N -0.531 5.531 23 H 0.265 0.735 24 H -0.003 1.003 25 H -0.006 1.006 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.110 0.890 29 H 0.131 0.869 30 H 0.177 0.823 31 H 0.431 0.569 32 H 0.140 0.860 33 H 0.099 0.901 34 H 0.128 0.872 35 H 0.125 0.875 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.853 -24.252 0.239 25.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.796 3.204 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.183 1.183 7 C -0.580 4.580 8 H 0.089 0.911 9 C 0.005 3.995 10 C -0.194 4.194 11 S -0.069 6.069 12 C -0.181 4.181 13 C 0.058 3.942 14 C -0.256 4.256 15 C 0.178 3.822 16 O -0.287 6.287 17 N -0.276 5.276 18 C 0.098 3.902 19 C -0.142 4.142 20 C -0.171 4.171 21 C -0.192 4.192 22 N -0.248 5.248 23 H 0.074 0.926 24 H 0.015 0.985 25 H 0.012 0.988 26 H 0.099 0.901 27 H 0.105 0.895 28 H 0.128 0.872 29 H 0.149 0.851 30 H 0.194 0.806 31 H 0.294 0.706 32 H 0.158 0.842 33 H 0.118 0.882 34 H 0.146 0.854 35 H 0.143 0.857 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.928 -24.477 1.034 24.990 hybrid contribution 1.694 1.489 -1.047 2.487 sum 6.622 -22.988 -0.013 23.922 Atomic orbital electron populations 1.70117 1.08061 1.28066 1.51038 1.26043 0.95766 1.03636 0.94398 0.85333 0.78616 0.77813 0.78596 1.19585 1.20946 1.18309 1.21548 0.93822 0.91159 1.51449 0.91109 1.18681 0.93776 0.91519 0.95548 1.23395 1.00107 0.91263 1.04624 1.87361 1.18018 1.03235 1.98238 1.22215 0.98242 0.89171 1.08520 1.20871 0.91061 0.94117 0.88186 1.22957 1.03670 0.97271 1.01730 1.19473 0.88102 0.88948 0.85707 1.84708 1.44893 1.64823 1.34321 1.67665 1.21137 1.39940 0.98862 1.22384 0.88645 0.86112 0.93068 1.20847 1.01794 0.99802 0.91778 1.23095 1.00519 0.88996 1.04523 1.23071 0.89784 1.02658 1.03695 1.67950 1.15735 1.10235 1.30859 0.92600 0.98489 0.98799 0.90141 0.89453 0.87169 0.85088 0.80575 0.70559 0.84190 0.88241 0.85425 0.85693 0.90264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.08 13.28 21.45 0.28 -56.80 16 2 C 0.00 0.00 5.46 84.66 0.46 0.46 16 3 Si 0.97 43.47 29.54 68.60 2.03 45.49 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 7 C -0.54 -30.15 9.11 25.60 0.23 -29.91 16 8 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 9 C 0.04 2.30 4.98 29.85 0.15 2.45 16 10 C -0.05 -1.87 5.88 71.98 0.42 -1.45 16 11 S -0.30 -10.96 21.72 -56.49 -1.23 -12.19 16 12 C -0.03 -0.88 6.27 71.23 0.45 -0.43 16 13 C 0.20 5.41 6.08 42.45 0.26 5.67 16 14 C -0.23 -5.24 9.81 22.54 0.22 -5.02 16 15 C 0.37 8.32 7.83 84.82 0.66 8.98 16 16 O -0.48 -8.17 13.58 -88.28 -1.20 -9.37 16 17 N -0.55 -13.91 9.38 -300.69 -2.82 -16.73 16 18 C 0.36 9.57 7.31 138.76 1.01 10.59 16 19 C -0.12 -2.46 6.23 -11.54 -0.07 -2.53 16 20 C -0.13 -2.00 10.01 30.62 0.31 -1.70 16 21 C -0.15 -2.67 10.24 30.62 0.31 -2.36 16 22 N -0.53 -15.38 10.27 -176.23 -1.81 -17.19 16 23 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 24 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 25 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 26 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 27 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 28 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 29 H 0.13 2.61 8.09 -2.39 -0.02 2.59 16 30 H 0.18 3.12 8.06 -2.91 -0.02 3.10 16 31 H 0.43 2.27 9.06 -74.06 -0.67 1.60 16 32 H 0.14 2.52 8.14 -2.39 -0.02 2.50 16 33 H 0.10 1.70 7.54 -2.39 -0.02 1.68 16 34 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.12 1.62 8.14 -2.39 -0.02 1.61 16 36 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -72.69 330.38 0.10 -72.60 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: 0.42 Total: 9.44 kcal Atomic # 6 Polarization: -19.67 SS G_CDS: 4.42 Total: -15.25 kcal Atomic # 7 Polarization: -86.37 SS G_CDS: -4.34 Total: -90.72 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: -1.20 Total: -9.37 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: -10.96 SS G_CDS: -1.23 Total: -12.19 kcal Total: -72.69 0.10 -72.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419585555.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.033 kcal (2) G-P(sol) polarization free energy of solvation -72.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds