Wall clock time and date at job start Tue Mar 31 2020 02:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99644 * 2 1 4 4 H 1.48493 * 109.47372 * 269.99966 * 3 2 1 5 5 H 1.48500 * 109.47197 * 30.00369 * 3 2 1 6 6 H 1.48501 * 109.47006 * 150.00123 * 3 2 1 7 7 C 1.37877 * 120.00299 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00040 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99965 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46970 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.46870 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00002 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00017 * 179.97438 * 11 10 9 14 14 C 1.47021 * 125.64707 * 359.97438 * 13 11 10 15 15 C 1.54327 * 107.27330 * 181.09376 * 14 13 11 16 16 C 1.55165 * 102.94078 * 22.19504 * 15 14 13 17 17 H 1.09002 * 111.00339 * 82.57124 * 16 15 14 18 18 C 1.50691 * 111.00532 * 206.42364 * 16 15 14 19 19 N 1.29031 * 124.91846 * 238.54908 * 18 16 15 20 20 C 1.31778 * 117.12810 * 179.97438 * 19 18 16 21 21 C 1.33643 * 114.50118 * 359.97438 * 20 19 18 22 22 S 1.70981 * 124.91649 * 58.24436 * 18 16 15 23 23 C 1.47422 * 125.64936 * 180.02562 * 13 11 10 24 24 H 0.97000 * 120.00325 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.47542 * 59.99799 * 9 7 2 26 26 H 1.09003 * 109.46814 * 299.99778 * 9 7 2 27 27 H 1.09001 * 109.47382 * 60.00247 * 10 9 7 28 28 H 1.08993 * 109.47319 * 299.99690 * 10 9 7 29 29 H 1.09000 * 109.88043 * 61.68020 * 14 13 11 30 30 H 1.09003 * 110.01247 * 300.58530 * 14 13 11 31 31 H 1.08993 * 110.72079 * 140.55660 * 15 14 13 32 32 H 1.09002 * 110.72173 * 263.83498 * 15 14 13 33 33 H 1.08002 * 122.75131 * 180.02562 * 20 19 18 34 34 H 1.07992 * 126.04135 * 180.02562 * 21 20 19 35 35 H 1.09001 * 110.36883 * 274.66973 * 23 13 11 36 36 H 1.09000 * 110.37098 * 36.88725 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0018 11 6 1.4920 -4.9671 -0.0012 12 8 0.2792 -4.9671 -0.0003 13 7 2.1659 -6.1343 -0.0026 14 6 3.6290 -6.2789 -0.0054 15 6 3.9400 -7.7902 -0.0344 16 6 2.6386 -8.4017 -0.6175 17 1 2.6317 -8.3407 -1.7057 18 6 2.4572 -9.8251 -0.1573 19 7 2.3574 -10.8470 -0.9388 20 6 2.2026 -12.0256 -0.3701 21 6 2.1706 -11.9965 0.9657 22 16 2.3613 -10.3209 1.4763 23 6 1.5581 -7.4774 -0.0028 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5568 -0.8902 26 1 0.6249 -2.5571 0.8897 27 1 2.8728 -3.6047 0.8877 28 1 2.8714 -3.6039 -0.8922 29 1 4.0474 -5.8316 0.8962 30 1 4.0498 -5.7969 -0.8879 31 1 4.7888 -7.9969 -0.6861 32 1 4.1250 -8.1653 0.9722 33 1 2.1101 -12.9402 -0.9369 34 1 2.0526 -12.8497 1.6171 35 1 1.3270 -7.7893 1.0158 36 1 0.6564 -7.4857 -0.6151 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881704703.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:04 Heat of formation + Delta-G solvation = 2.767930 kcal Electronic energy + Delta-G solvation = -18812.549845 eV Core-core repulsion = 15809.233917 eV Total energy + Delta-G solvation = -3003.315928 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.26698 -39.48995 -37.32910 -33.47774 -32.75651 -30.94507 -30.16528 -28.95462 -26.23117 -24.99015 -23.37504 -21.69117 -21.06769 -20.45518 -18.81213 -18.07729 -16.97914 -16.53502 -15.85618 -15.50960 -15.01506 -14.73058 -14.46614 -14.30885 -13.96375 -13.61323 -13.41508 -12.88413 -12.55978 -12.15307 -12.04900 -11.87836 -11.82373 -11.64033 -11.12828 -11.09234 -10.92232 -10.59372 -9.95965 -9.94850 -9.71665 -9.66257 -9.24559 -9.15910 -9.01636 -8.47742 -8.31204 -5.95485 -3.99987 0.36253 1.02989 1.44673 2.50090 3.11186 3.19227 3.33857 3.39998 3.42509 3.80256 4.24639 4.30620 4.48096 4.68177 4.85481 4.95102 5.03102 5.08893 5.19392 5.34515 5.39449 5.45672 5.60368 5.69853 5.75053 5.80586 5.87806 6.21183 6.23560 6.45237 6.87902 7.41641 7.74858 7.78408 7.86412 8.07599 8.38392 8.70094 9.08361 9.63523 11.15503 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.051248 B = 0.002945 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.226484 B = 9504.549232 C = 9693.420837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.527 4.527 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.123 4.123 11 C 0.527 3.473 12 O -0.530 6.530 13 N -0.630 5.630 14 C 0.104 3.896 15 C -0.123 4.123 16 C -0.031 4.031 17 H 0.117 0.883 18 C 0.064 3.936 19 N -0.474 5.474 20 C 0.039 3.961 21 C -0.266 4.266 22 S 0.134 5.866 23 C 0.115 3.885 24 H 0.261 0.739 25 H 0.024 0.976 26 H 0.024 0.976 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.176 0.824 34 H 0.177 0.823 35 H 0.065 0.935 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.469 -24.190 2.148 26.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.565 4.565 8 H 0.074 0.926 9 C -0.002 4.002 10 C -0.163 4.163 11 C 0.319 3.681 12 O -0.404 6.404 13 N -0.368 5.368 14 C -0.019 4.019 15 C -0.162 4.162 16 C -0.054 4.054 17 H 0.135 0.865 18 C -0.214 4.214 19 N -0.188 5.188 20 C -0.112 4.112 21 C -0.405 4.405 22 S 0.388 5.612 23 C -0.010 4.010 24 H 0.071 0.929 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.110 0.890 32 H 0.097 0.903 33 H 0.193 0.807 34 H 0.195 0.805 35 H 0.083 0.917 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.652 -23.377 2.544 25.056 hybrid contribution 0.389 -0.167 -0.478 0.638 sum 9.041 -23.544 2.067 25.305 Atomic orbital electron populations 1.69997 1.06064 1.26598 1.50170 1.25028 0.94823 0.99234 0.95311 0.86588 0.79763 0.83509 0.78068 1.20669 1.21230 1.19882 1.21206 0.92918 0.90958 1.51410 0.92585 1.18921 0.93199 0.89364 0.98667 1.21861 1.00653 0.91329 1.02474 1.21388 0.88156 0.84316 0.74276 1.90687 1.14261 1.86831 1.48639 1.48701 1.06718 1.05170 1.76231 1.21983 0.81559 0.95555 1.02850 1.22841 0.96776 0.94575 1.02021 1.21010 0.96610 0.85184 1.02591 0.86506 1.26791 1.02941 0.98881 0.92784 1.66273 1.15732 0.98297 1.38462 1.21819 1.01789 0.96104 0.91522 1.27168 1.12973 1.00648 0.99690 1.84150 1.66213 1.00448 1.10411 1.22165 0.96088 0.82207 1.00509 0.92936 0.95795 0.95791 0.90202 0.90166 0.90671 0.90641 0.89022 0.90259 0.80692 0.80518 0.91657 0.89673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.51 13.29 55.43 0.74 -26.77 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.65 29.54 -169.99 -5.02 16.62 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.53 -14.93 9.11 -34.44 -0.31 -15.24 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.04 0.97 4.26 -27.88 -0.12 0.85 16 10 C -0.12 -2.52 4.83 -27.88 -0.13 -2.65 16 11 C 0.53 10.42 7.85 -10.99 -0.09 10.33 16 12 O -0.53 -12.78 16.24 5.56 0.09 -12.69 16 13 N -0.63 -9.29 3.33 -170.52 -0.57 -9.86 16 14 C 0.10 1.09 6.49 -3.06 -0.02 1.07 16 15 C -0.12 -1.01 6.40 -24.89 -0.16 -1.17 16 16 C -0.03 -0.32 3.54 -89.62 -0.32 -0.63 16 17 H 0.12 1.21 8.14 -51.93 -0.42 0.78 16 18 C 0.06 0.66 6.26 -13.46 -0.08 0.57 16 19 N -0.47 -5.29 10.54 -11.86 -0.13 -5.42 16 20 C 0.04 0.34 11.35 -19.18 -0.22 0.12 16 21 C -0.27 -1.99 11.37 29.12 0.33 -1.66 16 22 S 0.13 1.14 21.78 -107.50 -2.34 -1.20 16 23 C 0.11 1.47 6.35 -2.53 -0.02 1.46 16 24 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 25 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 26 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 27 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 28 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.59 7.50 -51.93 -0.39 0.20 16 33 H 0.18 1.07 8.06 -52.49 -0.42 0.64 16 34 H 0.18 0.82 8.06 -52.49 -0.42 0.40 16 35 H 0.07 0.81 7.31 -51.93 -0.38 0.43 16 36 H 0.08 1.22 8.03 -51.93 -0.42 0.80 16 LS Contribution 319.34 15.07 4.81 4.81 Total: -1.00 -35.01 319.34 -8.60 -43.61 By element: Atomic # 1 Polarization: 1.20 SS G_CDS: -4.95 Total: -3.75 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: -1.23 Total: -5.37 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: 0.04 Total: -42.04 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: 0.09 Total: -12.69 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: 1.14 SS G_CDS: -2.34 Total: -1.20 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -35.01 -8.60 -43.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881704703.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.381 kcal (2) G-P(sol) polarization free energy of solvation -35.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds