Wall clock time and date at job start Tue Mar 31 2020 02:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99644 * 2 1 4 4 H 1.48493 * 109.47372 * 269.99966 * 3 2 1 5 5 H 1.48500 * 109.47197 * 30.00369 * 3 2 1 6 6 H 1.48501 * 109.47006 * 150.00123 * 3 2 1 7 7 C 1.37877 * 120.00299 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00040 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99965 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46970 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.46870 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00002 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00017 * 179.97438 * 11 10 9 14 14 C 1.47021 * 125.64707 * 359.97438 * 13 11 10 15 15 C 1.54327 * 107.27330 * 181.09376 * 14 13 11 16 16 C 1.55165 * 102.94078 * 22.19504 * 15 14 13 17 17 H 1.09002 * 111.00339 * 82.57124 * 16 15 14 18 18 C 1.50691 * 111.00532 * 206.42364 * 16 15 14 19 19 N 1.29031 * 124.91846 * 238.54908 * 18 16 15 20 20 C 1.31778 * 117.12810 * 179.97438 * 19 18 16 21 21 C 1.33643 * 114.50118 * 359.97438 * 20 19 18 22 22 S 1.70981 * 124.91649 * 58.24436 * 18 16 15 23 23 C 1.47422 * 125.64936 * 180.02562 * 13 11 10 24 24 H 0.97000 * 120.00325 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.47542 * 59.99799 * 9 7 2 26 26 H 1.09003 * 109.46814 * 299.99778 * 9 7 2 27 27 H 1.09001 * 109.47382 * 60.00247 * 10 9 7 28 28 H 1.08993 * 109.47319 * 299.99690 * 10 9 7 29 29 H 1.09000 * 109.88043 * 61.68020 * 14 13 11 30 30 H 1.09003 * 110.01247 * 300.58530 * 14 13 11 31 31 H 1.08993 * 110.72079 * 140.55660 * 15 14 13 32 32 H 1.09002 * 110.72173 * 263.83498 * 15 14 13 33 33 H 1.08002 * 122.75131 * 180.02562 * 20 19 18 34 34 H 1.07992 * 126.04135 * 180.02562 * 21 20 19 35 35 H 1.09001 * 110.36883 * 274.66973 * 23 13 11 36 36 H 1.09000 * 110.37098 * 36.88725 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0018 11 6 1.4920 -4.9671 -0.0012 12 8 0.2792 -4.9671 -0.0003 13 7 2.1659 -6.1343 -0.0026 14 6 3.6290 -6.2789 -0.0054 15 6 3.9400 -7.7902 -0.0344 16 6 2.6386 -8.4017 -0.6175 17 1 2.6317 -8.3407 -1.7057 18 6 2.4572 -9.8251 -0.1573 19 7 2.3574 -10.8470 -0.9388 20 6 2.2026 -12.0256 -0.3701 21 6 2.1706 -11.9965 0.9657 22 16 2.3613 -10.3209 1.4763 23 6 1.5581 -7.4774 -0.0028 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5568 -0.8902 26 1 0.6249 -2.5571 0.8897 27 1 2.8728 -3.6047 0.8877 28 1 2.8714 -3.6039 -0.8922 29 1 4.0474 -5.8316 0.8962 30 1 4.0498 -5.7969 -0.8879 31 1 4.7888 -7.9969 -0.6861 32 1 4.1250 -8.1653 0.9722 33 1 2.1101 -12.9402 -0.9369 34 1 2.0526 -12.8497 1.6171 35 1 1.3270 -7.7893 1.0158 36 1 0.6564 -7.4857 -0.6151 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881704703.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:04 Heat of formation + Delta-G solvation = -20.979107 kcal Electronic energy + Delta-G solvation = -18813.579594 eV Core-core repulsion = 15809.233917 eV Total energy + Delta-G solvation = -3004.345677 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.27492 -40.50460 -38.59406 -35.57563 -33.90819 -32.80677 -31.00774 -29.88904 -27.90592 -26.14532 -24.57502 -23.08675 -22.26234 -21.15304 -20.13043 -18.99903 -18.64534 -17.63523 -17.45136 -16.51574 -16.45984 -16.23730 -15.63338 -15.46814 -14.82478 -14.59531 -14.48250 -14.22482 -14.00457 -13.83308 -13.40293 -13.17578 -12.80755 -12.66255 -12.54282 -12.47846 -12.41996 -11.96214 -11.78795 -11.62183 -11.29856 -10.80917 -10.66790 -10.55918 -10.40026 -9.83342 -9.69925 -8.16990 -6.31216 -0.30559 0.37685 0.79270 1.43318 1.46273 1.57123 1.64458 1.80380 1.93439 2.44208 3.05438 3.16121 3.38098 3.45998 3.96928 3.99702 4.17581 4.25125 4.27045 4.41236 4.48150 4.52453 4.54772 4.58834 4.76833 4.81359 4.93545 5.05420 5.11340 5.20523 5.33040 5.51112 5.62951 5.85726 6.17836 6.44057 6.74596 6.87285 7.19836 7.39165 8.95888 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.051248 B = 0.002945 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.226484 B = 9504.549232 C = 9693.420837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.008 4.008 3 Si 0.975 3.025 4 H -0.272 1.272 5 H -0.287 1.287 6 H -0.253 1.253 7 C -0.541 4.541 8 H 0.078 0.922 9 C 0.041 3.959 10 C -0.110 4.110 11 C 0.525 3.475 12 O -0.590 6.590 13 N -0.622 5.622 14 C 0.093 3.907 15 C -0.110 4.110 16 C -0.021 4.021 17 H 0.112 0.888 18 C 0.043 3.957 19 N -0.500 5.500 20 C 0.019 3.981 21 C -0.251 4.251 22 S 0.145 5.855 23 C 0.111 3.889 24 H 0.263 0.737 25 H -0.019 1.019 26 H -0.018 1.018 27 H 0.106 0.894 28 H 0.105 0.895 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.117 0.883 32 H 0.091 0.909 33 H 0.197 0.803 34 H 0.208 0.792 35 H 0.071 0.929 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.723 -25.267 2.711 28.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.799 3.201 4 H -0.197 1.197 5 H -0.213 1.213 6 H -0.177 1.177 7 C -0.579 4.579 8 H 0.096 0.904 9 C 0.004 3.996 10 C -0.149 4.149 11 C 0.316 3.684 12 O -0.470 6.470 13 N -0.356 5.356 14 C -0.029 4.029 15 C -0.149 4.149 16 C -0.044 4.044 17 H 0.130 0.870 18 C -0.234 4.234 19 N -0.215 5.215 20 C -0.131 4.131 21 C -0.390 4.390 22 S 0.398 5.602 23 C -0.013 4.013 24 H 0.071 0.929 25 H -0.001 1.001 26 H 0.000 1.000 27 H 0.124 0.876 28 H 0.123 0.877 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.135 0.865 32 H 0.110 0.890 33 H 0.214 0.786 34 H 0.224 0.776 35 H 0.090 0.910 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 11.981 -24.509 3.103 27.457 hybrid contribution -0.652 0.016 -0.624 0.903 sum 11.329 -24.493 2.479 27.100 Atomic orbital electron populations 1.70185 1.08385 1.27813 1.51534 1.26161 0.95716 1.04028 0.94650 0.85305 0.78706 0.77616 0.78517 1.19731 1.21282 1.17709 1.21702 0.94052 0.91439 1.50698 0.90388 1.18707 0.93729 0.92533 0.94656 1.21598 0.99161 0.89340 1.04810 1.21162 0.87341 0.85622 0.74268 1.90661 1.16669 1.87810 1.51865 1.48555 1.08934 1.04457 1.73663 1.22388 0.78412 0.97677 1.04403 1.22855 0.96375 0.92379 1.03245 1.20840 0.96380 0.84998 1.02171 0.86996 1.26707 1.04298 0.98632 0.93749 1.66260 1.16210 0.99277 1.39706 1.22206 1.02388 0.96160 0.92375 1.27560 1.10914 1.00878 0.99655 1.84092 1.65718 1.01316 1.09069 1.22261 0.96393 0.81867 1.00775 0.92874 1.00084 0.99976 0.87637 0.87712 0.88995 0.89201 0.86492 0.89009 0.78609 0.77555 0.91040 0.92069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.08 13.29 21.45 0.28 -59.79 16 2 C -0.01 -0.48 5.46 84.65 0.46 -0.02 16 3 Si 0.97 44.27 29.54 68.60 2.03 46.29 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 6 H -0.25 -10.60 7.11 99.48 0.71 -9.89 16 7 C -0.54 -30.82 9.11 25.60 0.23 -30.59 16 8 H 0.08 4.01 7.74 -2.91 -0.02 3.98 16 9 C 0.04 2.33 4.26 29.85 0.13 2.46 16 10 C -0.11 -4.45 4.83 29.85 0.14 -4.31 16 11 C 0.52 21.22 7.85 87.66 0.69 21.91 16 12 O -0.59 -30.30 16.24 -3.03 -0.05 -30.35 16 13 N -0.62 -17.95 3.33 -811.79 -2.70 -20.65 16 14 C 0.09 1.68 6.49 86.73 0.56 2.24 16 15 C -0.11 -1.47 6.40 31.79 0.20 -1.27 16 16 C -0.02 -0.40 3.54 -10.15 -0.04 -0.44 16 17 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 18 C 0.04 0.83 6.26 88.52 0.55 1.39 16 19 N -0.50 -10.54 10.54 -191.45 -2.02 -12.55 16 20 C 0.02 0.29 11.35 83.66 0.95 1.24 16 21 C -0.25 -3.10 11.37 66.78 0.76 -2.34 16 22 S 0.14 2.18 21.78 -56.49 -1.23 0.95 16 23 C 0.11 2.86 6.35 86.86 0.55 3.41 16 24 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 25 H -0.02 -1.23 8.10 -2.39 -0.02 -1.25 16 26 H -0.02 -1.16 8.10 -2.39 -0.02 -1.18 16 27 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 28 H 0.10 3.72 8.14 -2.39 -0.02 3.70 16 29 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.09 1.05 7.50 -2.39 -0.02 1.03 16 33 H 0.20 1.97 8.06 -2.91 -0.02 1.95 16 34 H 0.21 1.17 8.06 -2.91 -0.02 1.15 16 35 H 0.07 1.76 7.31 -2.39 -0.02 1.74 16 36 H 0.06 1.86 8.03 -2.39 -0.02 1.84 16 Total: -1.00 -80.63 319.34 2.58 -78.04 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: 1.07 Total: 4.37 kcal Atomic # 6 Polarization: -11.52 SS G_CDS: 5.20 Total: -6.32 kcal Atomic # 7 Polarization: -88.56 SS G_CDS: -4.43 Total: -92.99 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -0.05 Total: -30.35 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 16 Polarization: 2.18 SS G_CDS: -1.23 Total: 0.95 kcal Total: -80.63 2.58 -78.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881704703.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.064 kcal (2) G-P(sol) polarization free energy of solvation -80.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds