Wall clock time and date at job start Tue Mar 31 2020 02:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00125 * 2 1 4 4 H 1.48500 * 109.46986 * 270.00051 * 3 2 1 5 5 H 1.48496 * 109.47029 * 30.00067 * 3 2 1 6 6 H 1.48499 * 109.47352 * 149.99897 * 3 2 1 7 7 C 1.38815 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00368 * 0.02562 * 7 2 1 9 9 N 1.36939 * 119.99845 * 179.72546 * 7 2 1 10 10 C 1.46496 * 120.00077 * 180.02562 * 9 7 2 11 11 H 1.09000 * 110.64000 * 36.68447 * 10 9 7 12 12 C 1.55160 * 110.71990 * 273.54634 * 10 9 7 13 13 C 1.54904 * 101.58416 * 206.13427 * 12 10 9 14 14 N 1.47434 * 104.83221 * 37.00719 * 13 12 10 15 15 C 1.34774 * 125.64804 * 155.91720 * 14 13 12 16 16 O 1.21277 * 119.99910 * 179.97438 * 15 14 13 17 17 C 1.50697 * 119.99872 * 359.97438 * 15 14 13 18 18 C 1.50707 * 109.46941 * 179.97438 * 17 15 14 19 19 C 1.38422 * 122.53591 * 90.00110 * 18 17 15 20 20 C 1.33388 * 114.91897 * 179.97438 * 19 18 17 21 21 S 1.75890 * 109.59368 * 0.02562 * 20 19 18 22 22 C 1.33380 * 122.53750 * 269.70826 * 18 17 15 23 23 C 1.47023 * 108.70268 * 335.87220 * 14 13 12 24 24 H 0.97000 * 120.00284 * 359.97438 * 1 2 3 25 25 H 0.97004 * 119.99914 * 359.97438 * 9 7 2 26 26 H 1.09008 * 110.99918 * 324.20876 * 12 10 9 27 27 H 1.08994 * 111.00219 * 88.01702 * 12 10 9 28 28 H 1.08995 * 110.37093 * 155.84550 * 13 12 10 29 29 H 1.09000 * 110.36548 * 278.05866 * 13 12 10 30 30 H 1.08999 * 109.47537 * 299.99471 * 17 15 14 31 31 H 1.09002 * 109.47602 * 60.00226 * 17 15 14 32 32 H 1.07997 * 122.54565 * 359.95403 * 19 18 17 33 33 H 1.08002 * 125.20664 * 180.02562 * 20 19 18 34 34 H 1.08000 * 125.20963 * 0.02562 * 22 18 17 35 35 H 1.08998 * 109.88202 * 241.64198 * 23 14 13 36 36 H 1.09004 * 109.88287 * 120.47603 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2022 -0.0051 10 6 4.1121 -2.4708 -0.0051 11 1 3.5933 -3.2141 -0.6106 12 6 4.3149 -2.9877 1.4437 13 6 5.5944 -3.8473 1.2911 14 7 6.4296 -3.1126 0.3235 15 6 7.7700 -3.2023 0.2156 16 8 8.3560 -2.5487 -0.6212 17 6 8.5405 -4.1147 1.1346 18 6 10.0096 -4.0318 0.8088 19 6 10.8559 -3.1182 1.4132 20 6 12.1265 -3.1781 1.0119 21 16 12.3046 -4.4446 -0.1956 22 6 10.5940 -4.8371 -0.0795 23 6 5.5579 -2.2666 -0.5048 24 1 -0.4850 0.8400 0.0004 25 1 3.8646 -0.3621 -0.0099 26 1 4.4800 -2.1603 2.1341 27 1 3.4696 -3.5973 1.7629 28 1 6.1095 -3.9341 2.2478 29 1 5.3438 -4.8354 0.9051 30 1 8.3796 -3.8094 2.1685 31 1 8.1964 -5.1403 1.0009 32 1 10.5133 -2.4104 2.1534 33 1 12.9240 -2.5457 1.3730 34 1 10.0930 -5.6101 -0.6433 35 1 5.6348 -2.5665 -1.5499 36 1 5.8437 -1.2204 -0.3951 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000966644484.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:31 Heat of formation + Delta-G solvation = -1.680826 kcal Electronic energy + Delta-G solvation = -19030.099547 eV Core-core repulsion = 16026.590706 eV Total energy + Delta-G solvation = -3003.508841 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.19237 -39.32062 -38.19133 -36.01007 -33.62001 -32.29970 -31.16018 -29.85083 -28.55981 -25.46968 -24.32762 -23.69195 -21.71300 -20.61159 -19.72658 -19.49859 -18.49821 -18.11659 -17.40219 -16.68194 -16.36709 -15.80477 -15.77532 -15.27868 -14.73721 -14.43340 -14.06173 -13.92483 -13.79752 -13.57765 -13.43252 -13.24890 -13.12744 -13.04858 -12.75087 -12.56697 -12.22697 -12.13931 -11.82281 -11.72575 -11.65306 -10.99300 -10.96462 -9.68838 -9.67355 -9.34332 -9.27760 -8.03674 -5.37884 0.11591 0.79309 1.08474 1.37715 1.39556 1.46021 1.62849 1.64115 2.16259 2.46668 3.26695 3.53743 3.57806 3.83404 3.90057 4.05084 4.12835 4.25026 4.33630 4.42107 4.48579 4.53012 4.61124 4.69204 4.77305 4.87379 4.99855 5.11901 5.19301 5.28761 5.43149 5.48034 5.54528 5.76273 6.20209 6.55907 7.04410 7.16278 7.79791 7.97124 9.17267 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.038136 B = 0.003236 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.033407 B = 8651.065921 C = 9009.129676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.059 4.059 3 Si 0.947 3.053 4 H -0.282 1.282 5 H -0.295 1.295 6 H -0.257 1.257 7 C -0.227 4.227 8 H 0.067 0.933 9 N -0.747 5.747 10 C 0.167 3.833 11 H 0.070 0.930 12 C -0.147 4.147 13 C 0.105 3.895 14 N -0.615 5.615 15 C 0.523 3.477 16 O -0.585 6.585 17 C -0.067 4.067 18 C -0.099 4.099 19 C -0.139 4.139 20 C -0.218 4.218 21 S 0.093 5.907 22 C -0.211 4.211 23 C 0.107 3.893 24 H 0.258 0.742 25 H 0.363 0.637 26 H 0.063 0.937 27 H 0.085 0.915 28 H 0.108 0.892 29 H 0.095 0.905 30 H 0.129 0.871 31 H 0.131 0.869 32 H 0.147 0.853 33 H 0.183 0.817 34 H 0.175 0.825 35 H 0.063 0.937 36 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.080 -12.719 5.678 27.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.250 4.250 3 Si 0.775 3.225 4 H -0.209 1.209 5 H -0.222 1.222 6 H -0.181 1.181 7 C -0.357 4.357 8 H 0.085 0.915 9 N -0.390 5.390 10 C 0.058 3.942 11 H 0.088 0.912 12 C -0.188 4.188 13 C -0.017 4.017 14 N -0.349 5.349 15 C 0.313 3.687 16 O -0.465 6.465 17 C -0.109 4.109 18 C -0.111 4.111 19 C -0.169 4.169 20 C -0.353 4.353 21 S 0.357 5.643 22 C -0.347 4.347 23 C -0.017 4.017 24 H 0.067 0.933 25 H 0.197 0.803 26 H 0.081 0.919 27 H 0.104 0.896 28 H 0.126 0.874 29 H 0.113 0.887 30 H 0.146 0.854 31 H 0.149 0.851 32 H 0.165 0.835 33 H 0.200 0.800 34 H 0.192 0.808 35 H 0.081 0.919 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 25.502 -13.032 4.369 28.970 hybrid contribution -1.360 2.055 0.474 2.509 sum 24.142 -10.977 4.844 26.959 Atomic orbital electron populations 1.69853 1.06930 1.26623 1.59650 1.25398 0.95983 1.00869 1.02797 0.85531 0.78597 0.80428 0.77921 1.20859 1.22163 1.18143 1.19006 0.82048 0.93677 1.41002 0.91493 1.42733 1.02760 1.03393 1.90113 1.21372 0.89113 0.87933 0.95803 0.91214 1.23351 0.97592 0.99778 0.98080 1.22580 0.90267 0.95526 0.93298 1.48583 1.05578 1.44285 1.36445 1.20964 0.80260 0.82855 0.84573 1.90699 1.68957 1.47743 1.39125 1.20400 0.89084 1.01185 1.00234 1.18590 0.96001 0.97397 0.99161 1.20276 0.92940 1.00667 1.03019 1.25847 1.01428 1.04701 1.03328 1.84133 1.07342 1.31883 1.40938 1.25683 0.97614 1.06762 1.04623 1.21961 0.90069 0.94714 0.94945 0.93312 0.80326 0.91851 0.89639 0.87389 0.88738 0.85350 0.85084 0.83512 0.79999 0.80802 0.91875 0.93249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.61 13.97 21.65 0.30 -61.31 16 2 C -0.06 -3.38 5.50 84.86 0.47 -2.92 16 3 Si 0.95 45.29 27.73 68.60 1.90 47.20 16 4 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 5 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 6 H -0.26 -11.24 6.53 99.48 0.65 -10.59 16 7 C -0.23 -12.36 10.46 84.03 0.88 -11.48 16 8 H 0.07 3.93 8.06 -2.91 -0.02 3.91 16 9 N -0.75 -33.49 5.05 -317.33 -1.60 -35.09 16 10 C 0.17 5.79 3.59 46.18 0.17 5.96 16 11 H 0.07 2.47 8.12 -2.39 -0.02 2.45 16 12 C -0.15 -4.05 6.77 31.99 0.22 -3.84 16 13 C 0.11 1.97 6.69 86.85 0.58 2.55 16 14 N -0.61 -15.76 3.33 -811.79 -2.70 -18.46 16 15 C 0.52 13.76 7.84 87.66 0.69 14.45 16 16 O -0.59 -21.05 16.36 -3.02 -0.05 -21.10 16 17 C -0.07 -1.10 4.96 29.10 0.14 -0.96 16 18 C -0.10 -1.95 4.29 -20.92 -0.09 -2.04 16 19 C -0.14 -2.69 9.98 21.22 0.21 -2.48 16 20 C -0.22 -3.83 11.23 66.72 0.75 -3.08 16 21 S 0.09 1.65 23.34 -56.49 -1.32 0.33 16 22 C -0.21 -4.02 10.98 66.72 0.73 -3.29 16 23 C 0.11 3.44 6.62 86.73 0.57 4.02 16 24 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 25 H 0.36 16.18 5.37 -92.71 -0.50 15.68 16 26 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 27 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.11 1.33 7.48 -2.39 -0.02 1.31 16 29 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.13 1.46 7.84 -2.39 -0.02 1.45 16 31 H 0.13 1.39 8.12 -2.39 -0.02 1.37 16 32 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 33 H 0.18 2.28 8.06 -2.91 -0.02 2.26 16 34 H 0.17 2.70 8.06 -2.91 -0.02 2.67 16 35 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.05 1.75 7.69 -2.38 -0.02 1.74 16 Total: -1.00 -73.14 317.15 2.38 -70.76 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: 0.53 Total: 20.78 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: 5.32 Total: -3.10 kcal Atomic # 7 Polarization: -110.86 SS G_CDS: -4.00 Total: -114.87 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: -0.05 Total: -21.10 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 1.90 Total: 47.20 kcal Atomic # 16 Polarization: 1.65 SS G_CDS: -1.32 Total: 0.33 kcal Total: -73.14 2.38 -70.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966644484.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.084 kcal (2) G-P(sol) polarization free energy of solvation -73.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds