Wall clock time and date at job start Tue Mar 31 2020 02:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86805 * 119.99784 * 2 1 4 4 H 1.48505 * 109.46922 * 269.99831 * 3 2 1 5 5 H 1.48497 * 109.47175 * 29.99818 * 3 2 1 6 6 H 1.48501 * 109.47285 * 149.99907 * 3 2 1 7 7 C 1.38813 * 120.00422 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99622 * 0.02562 * 7 2 1 9 9 N 1.36934 * 120.00321 * 180.02562 * 7 2 1 10 10 C 1.46497 * 120.00188 * 180.02562 * 9 7 2 11 11 C 1.53039 * 109.46222 * 154.99821 * 10 9 7 12 12 C 1.53192 * 109.31008 * 181.38500 * 11 10 9 13 13 N 1.46931 * 108.77654 * 305.36335 * 12 11 10 14 14 C 1.34774 * 120.63002 * 233.58948 * 13 12 11 15 15 O 1.21643 * 120.00194 * 6.07572 * 14 13 12 16 16 C 1.47188 * 120.00135 * 186.07449 * 14 13 12 17 17 C 1.44423 * 123.46358 * 216.52291 * 16 14 13 18 18 C 1.32769 * 113.08325 * 180.26911 * 17 16 14 19 19 S 1.75512 * 110.57664 * 359.60387 * 18 17 16 20 20 C 1.36010 * 123.45469 * 36.52780 * 16 14 13 21 21 C 1.46924 * 118.73543 * 53.86056 * 13 12 11 22 22 C 1.53043 * 109.45597 * 275.06681 * 10 9 7 23 23 H 0.97006 * 119.99839 * 0.02562 * 1 2 3 24 24 H 0.97008 * 119.99752 * 359.97438 * 9 7 2 25 25 H 1.09003 * 109.45854 * 35.02092 * 10 9 7 26 26 H 1.09000 * 109.49580 * 61.43035 * 11 10 9 27 27 H 1.08999 * 109.51975 * 301.35233 * 11 10 9 28 28 H 1.08998 * 109.58380 * 185.57568 * 12 11 10 29 29 H 1.08998 * 109.70734 * 65.22377 * 12 11 10 30 30 H 1.07998 * 123.45974 * 0.02562 * 17 16 14 31 31 H 1.08000 * 124.71596 * 179.73434 * 18 17 16 32 32 H 1.07998 * 124.59837 * 359.97438 * 20 16 14 33 33 H 1.09001 * 109.58322 * 65.93137 * 21 13 12 34 34 H 1.09004 * 109.57967 * 186.35251 * 21 13 12 35 35 H 1.08999 * 109.50078 * 298.56299 * 22 10 9 36 36 H 1.09003 * 109.49960 * 58.66396 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4707 0.0011 11 6 5.4999 -2.2583 -0.6082 12 6 6.2499 -3.5937 -0.6382 13 7 6.2664 -4.1574 0.7185 14 6 7.4284 -4.5191 1.2978 15 8 8.4846 -4.2791 0.7441 16 6 7.4194 -5.2044 2.6003 17 6 8.4128 -4.9810 3.6246 18 6 8.2099 -5.7112 4.7147 19 16 6.7736 -6.7036 4.5338 20 6 6.4747 -6.1132 2.9629 21 6 4.9916 -4.3250 1.4294 22 6 4.2562 -2.9762 1.4384 23 1 -0.4850 0.8401 -0.0004 24 1 3.8647 -0.3619 0.0007 25 1 3.5651 -3.2059 -0.5891 26 1 6.0566 -1.5418 -0.0042 27 1 5.3972 -1.8757 -1.6237 28 1 7.2724 -3.4309 -0.9788 29 1 5.7451 -4.2836 -1.3144 30 1 9.2384 -4.2936 3.5136 31 1 8.8398 -5.6951 5.5918 32 1 5.6471 -6.4191 2.3402 33 1 4.3840 -5.0722 0.9188 34 1 5.1837 -4.6449 2.4536 35 1 4.8246 -2.2531 2.0232 36 1 3.2678 -3.1051 1.8795 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989900775.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:07:42 Heat of formation + Delta-G solvation = 18.463081 kcal Electronic energy + Delta-G solvation = -19567.550150 eV Core-core repulsion = 16564.914815 eV Total energy + Delta-G solvation = -3002.635335 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.34885 -37.72678 -36.82429 -34.66710 -32.20506 -31.22939 -30.01914 -29.43028 -25.90865 -24.29793 -23.13589 -22.40161 -21.01537 -19.93219 -19.09593 -17.75102 -17.52323 -16.96547 -15.85434 -15.16464 -14.93301 -14.56603 -14.08363 -13.75095 -13.56476 -13.49606 -13.21860 -13.08395 -12.84100 -12.56933 -12.33762 -12.07227 -11.82406 -11.31519 -11.09445 -11.01934 -10.91229 -10.59360 -10.27358 -9.92380 -9.85916 -9.62355 -9.21075 -8.94360 -8.72160 -8.51002 -7.31638 -5.81122 -3.16962 0.60485 1.31650 1.66915 1.92167 2.90099 3.22644 3.35454 3.38958 3.43470 4.50690 4.55990 4.61282 4.96471 5.06760 5.08053 5.15512 5.25333 5.31327 5.45027 5.53164 5.58579 5.62582 5.79458 5.85640 5.90452 6.01320 6.06683 6.13949 6.27260 6.35269 6.52435 6.76965 6.90823 7.41988 7.94295 8.15325 8.38025 9.16254 9.89189 10.09006 11.37081 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.025487 B = 0.004106 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.327960 B = 6816.826847 C = 7279.206263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.006 3.994 3 Si 0.883 3.117 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.245 4.245 8 H 0.090 0.910 9 N -0.748 5.748 10 C 0.183 3.817 11 C -0.143 4.143 12 C 0.117 3.883 13 N -0.599 5.599 14 C 0.577 3.423 15 O -0.544 6.544 16 C -0.147 4.147 17 C -0.088 4.088 18 C -0.235 4.235 19 S 0.177 5.823 20 C -0.213 4.213 21 C 0.095 3.905 22 C -0.150 4.150 23 H 0.260 0.740 24 H 0.361 0.639 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.151 0.849 31 H 0.169 0.831 32 H 0.176 0.824 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.059 0.941 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.949 -13.973 8.009 21.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.190 4.190 3 Si 0.714 3.286 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.375 4.375 8 H 0.108 0.892 9 N -0.390 5.390 10 C 0.073 3.927 11 C -0.182 4.182 12 C -0.005 4.005 13 N -0.332 5.332 14 C 0.364 3.636 15 O -0.423 6.423 16 C -0.165 4.165 17 C -0.118 4.118 18 C -0.370 4.370 19 S 0.442 5.558 20 C -0.351 4.351 21 C -0.028 4.028 22 C -0.191 4.191 23 H 0.070 0.930 24 H 0.194 0.806 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.096 0.904 28 H 0.108 0.892 29 H 0.088 0.912 30 H 0.168 0.832 31 H 0.186 0.814 32 H 0.193 0.807 33 H 0.088 0.912 34 H 0.106 0.894 35 H 0.078 0.922 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 14.500 -14.927 8.631 22.529 hybrid contribution 1.068 2.347 -0.873 2.722 sum 15.568 -12.580 7.757 21.466 Atomic orbital electron populations 1.69700 1.05114 1.25876 1.57412 1.24664 0.95205 0.97204 1.01916 0.86568 0.79212 0.85013 0.77828 1.21038 1.21738 1.20370 1.19064 0.80537 0.94690 1.43203 0.89175 1.42803 1.04021 1.01987 1.90215 1.20151 0.90210 0.89414 0.92879 1.22243 0.97180 0.96487 1.02244 1.21623 1.02131 0.94763 0.81998 1.48037 1.06504 1.61757 1.16875 1.17679 0.83566 0.78299 0.84045 1.90772 1.30573 1.56085 1.64872 1.20285 0.97516 1.01937 0.96794 1.21114 0.98971 1.00318 0.91360 1.25490 1.03293 1.04450 1.03768 1.83085 1.21784 1.42036 1.08850 1.25856 1.03680 1.03113 1.02428 1.22336 0.83806 0.99312 0.97366 1.22711 1.00427 0.94698 1.01260 0.93029 0.80629 0.92495 0.91877 0.90377 0.89164 0.91206 0.83172 0.81372 0.80711 0.91235 0.89362 0.92241 0.90150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.87 13.97 55.49 0.78 -28.10 16 2 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 3 Si 0.88 21.94 27.74 -169.99 -4.71 17.22 16 4 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.28 -6.55 6.52 56.52 0.37 -6.18 16 7 C -0.25 -6.71 10.41 -15.06 -0.16 -6.86 16 8 H 0.09 2.62 8.06 -52.48 -0.42 2.20 16 9 N -0.75 -17.18 4.92 -53.38 -0.26 -17.44 16 10 C 0.18 3.32 2.73 -67.89 -0.19 3.14 16 11 C -0.14 -2.21 5.55 -26.61 -0.15 -2.36 16 12 C 0.12 1.61 6.44 -3.71 -0.02 1.59 16 13 N -0.60 -8.30 2.97 -173.85 -0.52 -8.81 16 14 C 0.58 8.59 7.48 -12.63 -0.09 8.50 16 15 O -0.54 -9.73 16.43 5.24 0.09 -9.64 16 16 C -0.15 -1.81 5.30 -104.63 -0.55 -2.36 16 17 C -0.09 -0.96 10.29 -39.02 -0.40 -1.36 16 18 C -0.24 -2.00 11.12 28.86 0.32 -1.68 16 19 S 0.18 1.40 23.02 -107.50 -2.48 -1.08 16 20 C -0.21 -2.09 8.35 29.93 0.25 -1.84 16 21 C 0.09 1.20 5.10 -3.49 -0.02 1.18 16 22 C -0.15 -2.43 5.67 -26.39 -0.15 -2.58 16 23 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 24 H 0.36 8.29 5.66 -40.82 -0.23 8.06 16 25 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 26 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.09 1.28 7.00 -51.93 -0.36 0.92 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.15 1.57 8.06 -52.49 -0.42 1.15 16 31 H 0.17 0.99 8.06 -52.49 -0.42 0.57 16 32 H 0.18 1.48 6.66 -52.49 -0.35 1.13 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.09 1.00 4.57 -51.93 -0.24 0.76 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 307.03 15.07 4.63 4.63 Total: -1.00 -32.71 307.03 -8.31 -41.02 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -4.57 Total: 6.75 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: -1.26 Total: -4.55 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: 0.00 Total: -54.36 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.09 Total: -9.64 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.71 Total: 17.22 kcal Atomic # 16 Polarization: 1.40 SS G_CDS: -2.48 Total: -1.08 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.71 -8.31 -41.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989900775.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.484 kcal (2) G-P(sol) polarization free energy of solvation -32.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds