Wall clock time and date at job start Tue Mar 31 2020 01:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00286 * 2 1 4 4 H 1.48501 * 109.46980 * 240.00234 * 3 2 1 5 5 H 1.48498 * 109.46934 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47271 * 119.99859 * 3 2 1 7 7 C 1.38817 * 119.99596 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99327 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00413 * 359.97438 * 7 2 1 10 10 C 1.47429 * 125.64449 * 345.82534 * 9 7 2 11 11 C 1.54909 * 104.83103 * 204.14855 * 10 9 7 12 12 C 1.55157 * 101.58004 * 322.99398 * 11 10 9 13 13 C 1.47015 * 125.64844 * 165.85001 * 9 7 2 14 14 H 1.09003 * 110.01209 * 59.43106 * 13 9 7 15 15 C 1.53003 * 109.88379 * 298.33494 * 13 9 7 16 16 N 1.46500 * 109.47202 * 176.74376 * 15 13 9 17 17 C 1.34770 * 120.00081 * 174.96987 * 16 15 13 18 18 O 1.21708 * 119.99984 * 0.02562 * 17 16 15 19 19 C 1.46585 * 120.00056 * 180.02562 * 17 16 15 20 20 C 1.36641 * 125.46013 * 180.02562 * 19 17 16 21 21 C 1.37467 * 113.30372 * 180.02562 * 20 19 17 22 22 C 1.33824 * 115.09895 * 359.97438 * 21 20 19 23 23 S 1.70623 * 110.95170 * 359.97438 * 22 21 20 24 24 H 0.96999 * 120.00097 * 359.97438 * 1 2 3 25 25 H 1.09000 * 110.36558 * 85.31447 * 10 9 7 26 26 H 1.09001 * 110.45851 * 323.03320 * 10 9 7 27 27 H 1.08999 * 111.00479 * 204.91720 * 11 10 9 28 28 H 1.09001 * 111.00407 * 81.06088 * 11 10 9 29 29 H 1.09000 * 110.72032 * 277.13344 * 12 11 10 30 30 H 1.09005 * 110.72373 * 153.86503 * 12 11 10 31 31 H 1.08996 * 109.46670 * 56.74749 * 15 13 9 32 32 H 1.09000 * 109.47245 * 296.74712 * 15 13 9 33 33 H 0.97007 * 119.99677 * 354.97278 * 16 15 13 34 34 H 1.08009 * 123.35197 * 359.97438 * 20 19 17 35 35 H 1.07997 * 122.45708 * 180.02562 * 21 20 19 36 36 H 1.07992 * 124.52718 * 179.73587 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3882 -0.0005 10 6 -0.1099 -2.5515 0.2934 11 6 -0.2525 -4.0182 0.7710 12 6 0.7655 -4.7450 -0.1470 13 6 1.9002 -3.7093 -0.2931 14 1 2.6996 -3.9331 0.4133 15 6 2.4467 -3.7343 -1.7220 16 7 3.0859 -5.0274 -1.9779 17 6 3.5519 -5.3169 -3.2089 18 8 3.4420 -4.5039 -4.1079 19 6 4.1910 -6.6109 -3.4650 20 6 4.7012 -7.0194 -4.6650 21 6 5.2439 -8.2817 -4.6239 22 6 5.1817 -8.8878 -3.4324 23 16 4.4249 -7.8860 -2.2770 24 1 -0.4850 0.8400 0.0004 25 1 -0.7026 -2.3862 -0.6064 26 1 -0.4181 -1.8643 1.0813 27 1 -1.2641 -4.3875 0.6021 28 1 0.0277 -4.1165 1.8198 29 1 0.3198 -4.9681 -1.1164 30 1 1.1325 -5.6547 0.3283 31 1 3.1790 -2.9363 -1.8448 32 1 1.6281 -3.5878 -2.4267 33 1 3.1738 -5.6752 -1.2612 34 1 4.6796 -6.4112 -5.5573 35 1 5.6886 -8.7499 -5.4896 36 1 5.5568 -9.8801 -3.2300 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027733773.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:55:09 Heat of formation + Delta-G solvation = 19.049639 kcal Electronic energy + Delta-G solvation = -19296.277192 eV Core-core repulsion = 16293.667292 eV Total energy + Delta-G solvation = -3002.609900 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.59144 -37.91328 -37.27959 -34.28316 -32.49241 -30.43502 -29.50172 -28.49236 -25.47972 -24.63771 -23.61180 -21.21141 -20.22318 -19.84267 -19.22166 -18.43203 -16.71859 -16.19208 -15.68297 -15.32114 -15.01068 -14.69208 -14.13837 -13.85422 -13.38702 -13.32437 -12.91543 -12.76861 -12.45299 -12.08888 -11.89407 -11.74405 -11.33451 -11.16007 -10.95132 -10.77484 -10.26456 -10.14004 -10.01850 -9.87315 -9.78858 -9.68238 -9.09013 -8.80484 -8.67430 -8.57581 -6.85497 -5.76997 -3.13901 0.38675 1.30593 1.70601 2.28390 3.33521 3.34761 3.42196 3.45853 3.47101 4.48431 4.74177 4.90676 5.13761 5.29720 5.32193 5.38972 5.49459 5.61193 5.77435 5.79964 5.97496 6.04882 6.12695 6.15507 6.23559 6.44608 6.53041 6.58148 6.67359 6.78489 7.03369 7.51044 7.59845 7.69022 7.78639 8.24642 8.36675 9.16811 9.77309 10.44383 11.34794 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.025405 B = 0.004111 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.878949 B = 6809.190280 C = 7508.552174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.000 4.000 3 Si 0.911 3.089 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.236 4.236 8 H 0.076 0.924 9 N -0.588 5.588 10 C 0.172 3.828 11 C -0.148 4.148 12 C -0.127 4.127 13 C 0.152 3.848 14 H 0.038 0.962 15 C 0.109 3.891 16 N -0.717 5.717 17 C 0.581 3.419 18 O -0.530 6.530 19 C -0.254 4.254 20 C -0.065 4.065 21 C -0.148 4.148 22 C -0.237 4.237 23 S 0.198 5.802 24 H 0.255 0.745 25 H 0.026 0.974 26 H 0.073 0.927 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.393 0.607 34 H 0.153 0.847 35 H 0.144 0.856 36 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.161 -18.770 -3.135 20.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.197 4.197 3 Si 0.741 3.259 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.364 4.364 8 H 0.093 0.907 9 N -0.312 5.312 10 C 0.047 3.953 11 C -0.187 4.187 12 C -0.165 4.165 13 C 0.043 3.957 14 H 0.055 0.945 15 C -0.016 4.016 16 N -0.367 5.367 17 C 0.366 3.634 18 O -0.409 6.409 19 C -0.375 4.375 20 C -0.098 4.098 21 C -0.180 4.180 22 C -0.375 4.375 23 S 0.465 5.535 24 H 0.065 0.935 25 H 0.044 0.956 26 H 0.092 0.908 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.226 0.774 34 H 0.171 0.829 35 H 0.162 0.838 36 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 6.632 -18.055 -2.193 19.359 hybrid contribution 0.963 0.555 -1.380 1.772 sum 7.595 -17.500 -3.573 19.409 Atomic orbital electron populations 1.69926 1.05034 1.25462 1.55718 1.24907 0.95674 0.97869 1.01293 0.86219 0.78600 0.83025 0.78047 1.20926 1.21537 1.21048 1.18948 0.90393 0.82183 1.44924 0.90665 1.44476 1.06139 1.00840 1.79781 1.21468 0.84679 0.90240 0.98893 1.23007 0.97512 0.99587 0.98590 1.22624 0.97123 0.96969 0.99830 1.21132 0.94532 0.88179 0.91857 0.94457 1.22326 0.97310 0.82346 0.99611 1.46044 1.60143 1.20139 1.10420 1.16999 0.78429 0.84747 0.83261 1.90845 1.57382 1.48565 1.44069 1.24858 1.13175 1.00425 0.99019 1.20819 0.95762 0.95520 0.97669 1.20048 1.04059 0.95278 0.98576 1.25299 1.08115 1.05678 0.98415 1.83045 1.52847 1.05466 1.12157 0.93524 0.95620 0.90826 0.92300 0.92266 0.91776 0.92374 0.91180 0.91277 0.77389 0.82911 0.83849 0.81529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.61 10.56 55.49 0.59 -26.02 16 2 C 0.00 0.00 5.47 -17.43 -0.10 -0.10 16 3 Si 0.91 22.10 29.55 -169.99 -5.02 17.08 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.24 -6.47 9.75 -15.06 -0.15 -6.61 16 8 H 0.08 2.01 7.83 -52.48 -0.41 1.59 16 9 N -0.59 -14.59 3.13 -162.57 -0.51 -15.10 16 10 C 0.17 4.09 5.42 -2.53 -0.01 4.07 16 11 C -0.15 -2.70 7.09 -24.58 -0.17 -2.88 16 12 C -0.13 -2.13 6.14 -24.90 -0.15 -2.28 16 13 C 0.15 3.00 3.21 -66.95 -0.21 2.78 16 14 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 15 C 0.11 2.13 5.08 -4.04 -0.02 2.11 16 16 N -0.72 -11.37 5.34 -61.65 -0.33 -11.69 16 17 C 0.58 9.77 7.78 -12.90 -0.10 9.67 16 18 O -0.53 -11.06 16.84 5.18 0.09 -10.97 16 19 C -0.25 -3.34 6.45 -36.79 -0.24 -3.58 16 20 C -0.06 -0.76 10.01 -40.44 -0.40 -1.17 16 21 C -0.15 -1.35 10.15 -41.41 -0.42 -1.77 16 22 C -0.24 -1.96 10.92 29.18 0.32 -1.64 16 23 S 0.20 1.87 22.16 -107.50 -2.38 -0.51 16 24 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 25 H 0.03 0.67 8.07 -51.93 -0.42 0.25 16 26 H 0.07 1.94 6.90 -51.93 -0.36 1.59 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.06 1.07 7.80 -51.93 -0.40 0.66 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 1.55 7.90 -51.93 -0.41 1.14 16 32 H 0.07 1.50 8.06 -51.93 -0.42 1.09 16 33 H 0.39 5.09 7.47 -40.82 -0.31 4.78 16 34 H 0.15 1.77 8.06 -52.48 -0.42 1.35 16 35 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.17 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 315.43 15.07 4.75 4.75 Total: -1.00 -31.86 315.43 -9.30 -41.16 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -4.82 Total: 2.68 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: -1.66 Total: -1.37 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: -0.25 Total: -52.82 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.09 Total: -10.97 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Atomic # 16 Polarization: 1.87 SS G_CDS: -2.38 Total: -0.51 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.86 -9.30 -41.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027733773.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.212 kcal (2) G-P(sol) polarization free energy of solvation -31.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds