Wall clock time and date at job start Tue Mar 31 2020 01:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00286 * 2 1 4 4 H 1.48501 * 109.46980 * 240.00234 * 3 2 1 5 5 H 1.48498 * 109.46934 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47271 * 119.99859 * 3 2 1 7 7 C 1.38817 * 119.99596 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99327 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00413 * 359.97438 * 7 2 1 10 10 C 1.47429 * 125.64449 * 345.82534 * 9 7 2 11 11 C 1.54909 * 104.83103 * 204.14855 * 10 9 7 12 12 C 1.55157 * 101.58004 * 322.99398 * 11 10 9 13 13 C 1.47015 * 125.64844 * 165.85001 * 9 7 2 14 14 H 1.09003 * 110.01209 * 59.43106 * 13 9 7 15 15 C 1.53003 * 109.88379 * 298.33494 * 13 9 7 16 16 N 1.46500 * 109.47202 * 176.74376 * 15 13 9 17 17 C 1.34770 * 120.00081 * 174.96987 * 16 15 13 18 18 O 1.21708 * 119.99984 * 0.02562 * 17 16 15 19 19 C 1.46585 * 120.00056 * 180.02562 * 17 16 15 20 20 C 1.36641 * 125.46013 * 180.02562 * 19 17 16 21 21 C 1.37467 * 113.30372 * 180.02562 * 20 19 17 22 22 C 1.33824 * 115.09895 * 359.97438 * 21 20 19 23 23 S 1.70623 * 110.95170 * 359.97438 * 22 21 20 24 24 H 0.96999 * 120.00097 * 359.97438 * 1 2 3 25 25 H 1.09000 * 110.36558 * 85.31447 * 10 9 7 26 26 H 1.09001 * 110.45851 * 323.03320 * 10 9 7 27 27 H 1.08999 * 111.00479 * 204.91720 * 11 10 9 28 28 H 1.09001 * 111.00407 * 81.06088 * 11 10 9 29 29 H 1.09000 * 110.72032 * 277.13344 * 12 11 10 30 30 H 1.09005 * 110.72373 * 153.86503 * 12 11 10 31 31 H 1.08996 * 109.46670 * 56.74749 * 15 13 9 32 32 H 1.09000 * 109.47245 * 296.74712 * 15 13 9 33 33 H 0.97007 * 119.99677 * 354.97278 * 16 15 13 34 34 H 1.08009 * 123.35197 * 359.97438 * 20 19 17 35 35 H 1.07997 * 122.45708 * 180.02562 * 21 20 19 36 36 H 1.07992 * 124.52718 * 179.73587 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3882 -0.0005 10 6 -0.1099 -2.5515 0.2934 11 6 -0.2525 -4.0182 0.7710 12 6 0.7655 -4.7450 -0.1470 13 6 1.9002 -3.7093 -0.2931 14 1 2.6996 -3.9331 0.4133 15 6 2.4467 -3.7343 -1.7220 16 7 3.0859 -5.0274 -1.9779 17 6 3.5519 -5.3169 -3.2089 18 8 3.4420 -4.5039 -4.1079 19 6 4.1910 -6.6109 -3.4650 20 6 4.7012 -7.0194 -4.6650 21 6 5.2439 -8.2817 -4.6239 22 6 5.1817 -8.8878 -3.4324 23 16 4.4249 -7.8860 -2.2770 24 1 -0.4850 0.8400 0.0004 25 1 -0.7026 -2.3862 -0.6064 26 1 -0.4181 -1.8643 1.0813 27 1 -1.2641 -4.3875 0.6021 28 1 0.0277 -4.1165 1.8198 29 1 0.3198 -4.9681 -1.1164 30 1 1.1325 -5.6547 0.3283 31 1 3.1790 -2.9363 -1.8448 32 1 1.6281 -3.5878 -2.4267 33 1 3.1738 -5.6752 -1.2612 34 1 4.6796 -6.4112 -5.5573 35 1 5.6886 -8.7499 -5.4896 36 1 5.5568 -9.8801 -3.2300 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027733773.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:55:08 Heat of formation + Delta-G solvation = -2.229136 kcal Electronic energy + Delta-G solvation = -19297.199909 eV Core-core repulsion = 16293.667292 eV Total energy + Delta-G solvation = -3003.532617 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.93018 -39.37624 -38.34046 -35.83684 -34.42808 -31.73130 -31.15359 -29.91200 -26.89088 -26.26973 -24.99077 -22.44274 -21.92406 -21.32826 -20.25094 -19.63358 -18.59343 -17.44408 -16.92453 -16.66647 -16.47999 -16.26621 -15.72538 -15.40259 -14.81532 -14.59563 -14.03230 -13.80847 -13.68139 -13.65544 -13.42059 -13.19662 -13.00734 -12.87086 -12.66376 -12.06576 -11.95732 -11.86374 -11.75410 -11.50065 -11.41887 -11.25203 -10.68557 -10.29333 -9.81284 -9.50096 -8.88161 -7.89223 -5.27203 -0.48447 0.50159 0.95670 1.43014 1.43844 1.47536 1.53010 2.04098 2.15224 2.49159 3.30109 3.65743 3.81480 3.95537 3.96257 4.16385 4.24728 4.36807 4.41798 4.51801 4.57493 4.70196 4.91843 4.97545 5.05150 5.11888 5.16802 5.24770 5.28457 5.37767 5.45508 5.52757 5.65826 5.77503 6.21685 6.42304 7.07201 7.09171 7.74758 8.40522 9.21360 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.025405 B = 0.004111 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.878949 B = 6809.190280 C = 7508.552174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.058 4.058 3 Si 0.972 3.028 4 H -0.283 1.283 5 H -0.292 1.292 6 H -0.272 1.272 7 C -0.244 4.244 8 H 0.077 0.923 9 N -0.610 5.610 10 C 0.173 3.827 11 C -0.132 4.132 12 C -0.115 4.115 13 C 0.148 3.852 14 H 0.054 0.946 15 C 0.129 3.871 16 N -0.703 5.703 17 C 0.580 3.420 18 O -0.585 6.585 19 C -0.303 4.303 20 C -0.062 4.062 21 C -0.160 4.160 22 C -0.215 4.215 23 S 0.244 5.756 24 H 0.248 0.752 25 H -0.009 1.009 26 H 0.038 0.962 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.106 0.894 31 H 0.037 0.963 32 H 0.039 0.961 33 H 0.410 0.590 34 H 0.142 0.858 35 H 0.171 0.829 36 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.730 -22.455 -2.268 24.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.252 4.252 3 Si 0.800 3.200 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.198 1.198 7 C -0.373 4.373 8 H 0.094 0.906 9 N -0.335 5.335 10 C 0.048 3.952 11 C -0.171 4.171 12 C -0.153 4.153 13 C 0.040 3.960 14 H 0.071 0.929 15 C 0.002 3.998 16 N -0.355 5.355 17 C 0.368 3.632 18 O -0.467 6.467 19 C -0.424 4.424 20 C -0.097 4.097 21 C -0.190 4.190 22 C -0.353 4.353 23 S 0.511 5.489 24 H 0.057 0.943 25 H 0.009 0.991 26 H 0.057 0.943 27 H 0.102 0.898 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.124 0.876 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.247 0.753 34 H 0.160 0.840 35 H 0.188 0.812 36 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 8.227 -21.806 -1.289 23.342 hybrid contribution 0.555 1.553 -1.676 2.351 sum 8.782 -20.253 -2.965 22.274 Atomic orbital electron populations 1.70132 1.06291 1.25515 1.57335 1.25678 0.96510 1.00990 1.01982 0.85253 0.77347 0.79171 0.78188 1.20960 1.21845 1.19795 1.19280 0.90778 0.83626 1.43616 0.90551 1.44744 1.06636 1.01963 1.80136 1.21289 0.83937 0.93618 0.96373 1.22872 0.99571 0.95192 0.99420 1.22624 0.95198 0.97427 1.00019 1.21344 0.96140 0.86911 0.91563 0.92867 1.21782 0.95568 0.83401 0.99005 1.45721 1.59686 1.19002 1.11075 1.17536 0.77531 0.85732 0.82450 1.90806 1.59568 1.50792 1.45569 1.24531 1.16014 1.00369 1.01448 1.21025 0.95068 0.96630 0.96967 1.20222 1.04444 0.94162 1.00160 1.25830 1.05502 1.06562 0.97413 1.82825 1.52015 1.03364 1.10648 0.94259 0.99138 0.94310 0.89828 0.90888 0.91793 0.87581 0.94503 0.94213 0.75287 0.84042 0.81205 0.77842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.41 10.56 21.65 0.23 -57.18 16 2 C -0.06 -3.33 5.47 84.86 0.46 -2.86 16 3 Si 0.97 46.75 29.55 68.60 2.03 48.78 16 4 H -0.28 -13.49 7.11 99.48 0.71 -12.79 16 5 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 6 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.24 -13.75 9.75 84.03 0.82 -12.93 16 8 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 9 N -0.61 -30.98 3.13 -668.24 -2.09 -33.07 16 10 C 0.17 8.45 5.42 86.85 0.47 8.92 16 11 C -0.13 -4.55 7.09 31.99 0.23 -4.33 16 12 C -0.11 -3.52 6.14 31.78 0.20 -3.33 16 13 C 0.15 5.75 3.21 45.34 0.15 5.90 16 14 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 15 C 0.13 5.19 5.08 86.38 0.44 5.63 16 16 N -0.70 -22.05 5.34 -467.17 -2.49 -24.54 16 17 C 0.58 19.83 7.78 86.42 0.67 20.50 16 18 O -0.59 -25.75 16.84 -4.37 -0.07 -25.82 16 19 C -0.30 -7.65 6.45 24.08 0.16 -7.50 16 20 C -0.06 -1.39 10.01 21.71 0.22 -1.18 16 21 C -0.16 -2.37 10.15 21.08 0.21 -2.15 16 22 C -0.22 -2.53 10.92 66.82 0.73 -1.80 16 23 S 0.24 3.74 22.16 -56.49 -1.25 2.48 16 24 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 25 H -0.01 -0.52 8.07 -2.39 -0.02 -0.54 16 26 H 0.04 2.13 6.90 -2.39 -0.02 2.12 16 27 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 28 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.06 1.99 7.80 -2.39 -0.02 1.97 16 30 H 0.11 2.32 8.14 -2.38 -0.02 2.30 16 31 H 0.04 1.71 7.90 -2.39 -0.02 1.69 16 32 H 0.04 1.82 8.06 -2.39 -0.02 1.80 16 33 H 0.41 9.74 7.47 -92.70 -0.69 9.05 16 34 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 35 H 0.17 1.58 8.06 -2.91 -0.02 1.55 16 36 H 0.20 0.92 8.06 -2.91 -0.02 0.90 16 Total: -1.00 -74.86 315.43 1.49 -73.37 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: 0.39 Total: 11.11 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: 4.75 Total: 4.87 kcal Atomic # 7 Polarization: -110.44 SS G_CDS: -4.35 Total: -114.79 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -0.07 Total: -25.82 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.78 kcal Atomic # 16 Polarization: 3.74 SS G_CDS: -1.25 Total: 2.48 kcal Total: -74.86 1.49 -73.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027733773.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.137 kcal (2) G-P(sol) polarization free energy of solvation -74.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds