Wall clock time and date at job start Tue Mar 31 2020 01:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99879 * 2 1 4 4 H 1.48500 * 109.46947 * 239.99967 * 3 2 1 5 5 H 1.48501 * 109.47368 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46807 * 120.00386 * 3 2 1 7 7 C 1.37876 * 119.99550 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99280 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00575 * 359.97438 * 7 2 1 10 10 N 1.46495 * 109.47414 * 180.02562 * 9 7 2 11 11 C 1.34774 * 119.99999 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00351 * 0.02562 * 11 10 9 13 13 C 1.50706 * 119.99734 * 179.97438 * 11 10 9 14 14 N 1.46500 * 109.46878 * 180.02562 * 13 11 10 15 15 N 1.28390 * 119.09926 * 270.27871 * 14 13 11 16 16 C 1.31411 * 122.26256 * 180.29801 * 15 14 13 17 17 C 1.47886 * 119.89076 * 179.70280 * 16 15 14 18 18 N 1.34777 * 120.00387 * 359.72880 * 17 16 15 19 19 O 1.21550 * 119.99886 * 179.72605 * 17 16 15 20 20 C 1.41570 * 120.21433 * 359.42848 * 16 15 14 21 21 C 1.36328 * 118.23716 * 0.26858 * 20 16 15 22 22 C 1.34611 * 119.10367 * 90.00114 * 14 13 11 23 23 O 1.21978 * 120.21897 * 0.02562 * 22 14 13 24 24 H 0.97003 * 119.99558 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46655 * 60.00078 * 9 7 2 26 26 H 1.08995 * 109.46973 * 300.00467 * 9 7 2 27 27 H 0.96998 * 119.99806 * 0.02562 * 10 9 7 28 28 H 1.08996 * 109.46757 * 60.01029 * 13 11 10 29 29 H 1.08990 * 109.47210 * 300.00351 * 13 11 10 30 30 H 0.97001 * 120.00485 * 180.02562 * 18 17 16 31 31 H 0.97005 * 119.99790 * 359.72286 * 18 17 16 32 32 H 1.08000 * 120.88540 * 180.29801 * 20 16 15 33 33 H 1.08005 * 121.03369 * 180.02562 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7537 -4.8833 0.0000 12 8 0.5614 -5.1050 0.0000 13 6 2.7331 -6.0288 -0.0006 14 7 2.0005 -7.2975 -0.0005 15 7 1.6841 -7.8357 1.1214 16 6 1.0327 -8.9747 1.1941 17 6 0.7007 -9.5508 2.5150 18 7 1.0707 -8.9106 3.6418 19 8 0.0939 -10.6018 2.5845 20 6 0.6428 -9.6491 0.0119 21 6 0.9663 -9.0877 -1.1875 22 6 1.6727 -7.8644 -1.1766 23 8 1.9839 -7.3255 -2.2257 24 1 -0.4850 0.8401 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8896 27 1 3.1567 -3.4354 -0.0002 28 1 3.3602 -5.9710 0.8890 29 1 3.3591 -5.9712 -0.8909 30 1 0.8532 -9.2887 4.5082 31 1 1.5585 -8.0739 3.5863 32 1 0.1030 -10.5833 0.0590 33 1 0.6909 -9.5632 -2.1173 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165621521.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:25 Heat of formation + Delta-G solvation = -74.532110 kcal Electronic energy + Delta-G solvation = -21081.286076 eV Core-core repulsion = 17528.324952 eV Total energy + Delta-G solvation = -3552.961124 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.100 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.39941 -40.76287 -40.29527 -38.92491 -36.34506 -35.88155 -34.87749 -34.43499 -32.59593 -30.79230 -28.86980 -26.67844 -25.44163 -24.38193 -22.87588 -21.75128 -19.80330 -19.69843 -19.16393 -18.18965 -18.02208 -17.63268 -17.37290 -16.94841 -16.74815 -16.44950 -15.94543 -15.76757 -15.46603 -14.83933 -14.71275 -14.45519 -14.29875 -14.12952 -13.99103 -13.29630 -12.97572 -12.85185 -12.67781 -12.25985 -11.90976 -11.61483 -11.53908 -11.05544 -10.98975 -10.81586 -10.76904 -9.95923 -9.81624 -8.30463 -6.47541 -0.71400 -0.03999 0.76927 1.44019 1.47653 1.52155 1.55990 1.60774 2.18656 2.23751 2.37856 2.56017 2.86847 3.05025 3.51141 3.65506 3.69154 3.81723 4.03393 4.09481 4.36177 4.50954 4.76595 4.89958 5.05782 5.18911 5.40007 5.60806 5.77139 5.80653 6.18825 6.30235 6.61508 6.70399 6.76029 7.14319 7.19162 7.34006 8.81490 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.026877 B = 0.003629 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.525067 B = 7714.452645 C = 8288.903368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.985 3.015 4 H -0.263 1.263 5 H -0.288 1.288 6 H -0.259 1.259 7 C -0.557 4.557 8 H 0.089 0.911 9 C 0.268 3.732 10 N -0.694 5.694 11 C 0.487 3.513 12 O -0.597 6.597 13 C 0.096 3.904 14 N -0.320 5.320 15 N -0.171 5.171 16 C 0.008 3.992 17 C 0.602 3.398 18 N -0.816 5.816 19 O -0.559 6.559 20 C -0.023 4.023 21 C -0.189 4.189 22 C 0.472 3.528 23 O -0.558 6.558 24 H 0.269 0.731 25 H -0.017 1.017 26 H -0.007 1.007 27 H 0.415 0.585 28 H 0.180 0.820 29 H 0.154 0.846 30 H 0.420 0.580 31 H 0.419 0.581 32 H 0.189 0.811 33 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.144 -18.161 5.786 21.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.808 3.192 4 H -0.188 1.188 5 H -0.214 1.214 6 H -0.183 1.183 7 C -0.594 4.594 8 H 0.107 0.893 9 C 0.145 3.855 10 N -0.345 5.345 11 C 0.272 3.728 12 O -0.478 6.478 13 C -0.028 4.028 14 N -0.141 5.141 15 N -0.001 5.001 16 C -0.163 4.163 17 C 0.383 3.617 18 N -0.380 5.380 19 O -0.436 6.436 20 C -0.046 4.046 21 C -0.218 4.218 22 C 0.273 3.727 23 O -0.438 6.438 24 H 0.077 0.923 25 H 0.001 0.999 26 H 0.010 0.990 27 H 0.252 0.748 28 H 0.198 0.802 29 H 0.171 0.829 30 H 0.254 0.746 31 H 0.250 0.750 32 H 0.207 0.793 33 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 8.344 -17.852 5.556 20.474 hybrid contribution -0.089 0.982 -0.462 1.088 sum 8.255 -16.871 5.094 19.461 Atomic orbital electron populations 1.70141 1.08371 1.28668 1.49898 1.26076 0.95731 1.03979 0.93793 0.85197 0.77881 0.76498 0.79597 1.18770 1.21356 1.18285 1.21595 0.94512 0.90299 1.53026 0.89300 1.18570 0.88628 0.84138 0.94171 1.46029 1.11705 1.04821 1.71908 1.21287 0.89706 0.85390 0.76401 1.90694 1.19207 1.85409 1.52533 1.22114 0.92860 0.76792 1.10987 1.46305 1.44736 1.20148 1.02872 1.70869 1.07700 1.09114 1.12420 1.21907 1.04144 0.93234 0.97048 1.17081 0.78273 0.83220 0.83111 1.43538 1.58718 1.27818 1.07917 1.90857 1.42419 1.23444 1.86891 1.22422 0.92446 1.00328 0.89384 1.22857 1.02421 0.94458 1.02073 1.18671 0.82177 0.88298 0.83600 1.90967 1.56296 1.65993 1.30536 0.92267 0.99900 0.98954 0.74836 0.80240 0.82877 0.74577 0.74968 0.79349 0.79000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.67 13.29 21.45 0.28 -55.39 16 2 C 0.00 0.21 5.46 84.65 0.46 0.67 16 3 Si 0.99 41.29 29.54 68.60 2.03 43.31 16 4 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 5 H -0.29 -12.11 7.11 99.48 0.71 -11.40 16 6 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 7 C -0.56 -29.29 9.28 25.60 0.24 -29.05 16 8 H 0.09 4.13 7.60 -2.91 -0.02 4.11 16 9 C 0.27 14.30 5.43 85.63 0.46 14.76 16 10 N -0.69 -27.38 5.55 -466.81 -2.59 -29.97 16 11 C 0.49 18.48 7.89 87.66 0.69 19.17 16 12 O -0.60 -29.22 16.43 -3.03 -0.05 -29.27 16 13 C 0.10 2.34 6.04 85.64 0.52 2.86 16 14 N -0.32 -8.65 2.71 -476.23 -1.29 -9.94 16 15 N -0.17 -3.96 10.11 -48.20 -0.49 -4.45 16 16 C 0.01 0.18 6.84 42.59 0.29 0.47 16 17 C 0.60 11.90 8.08 86.80 0.70 12.60 16 18 N -0.82 -10.60 8.86 -175.57 -1.56 -12.15 16 19 O -0.56 -13.87 17.22 -3.87 -0.07 -13.93 16 20 C -0.02 -0.44 9.67 22.65 0.22 -0.22 16 21 C -0.19 -4.18 10.11 22.57 0.23 -3.95 16 22 C 0.47 14.17 7.46 85.01 0.63 14.80 16 23 O -0.56 -20.56 16.62 -5.24 -0.09 -20.65 16 24 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 25 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 26 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 27 H 0.41 12.64 8.32 -92.71 -0.77 11.87 16 28 H 0.18 2.55 8.14 -2.39 -0.02 2.53 16 29 H 0.15 3.29 7.35 -2.39 -0.02 3.27 16 30 H 0.42 3.72 8.93 -92.71 -0.83 2.89 16 31 H 0.42 4.57 8.16 -92.70 -0.76 3.82 16 32 H 0.19 2.59 7.72 -2.91 -0.02 2.56 16 33 H 0.19 3.20 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -83.41 306.77 -0.52 -83.93 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -1.15 Total: 16.39 kcal Atomic # 6 Polarization: 27.67 SS G_CDS: 4.45 Total: 32.12 kcal Atomic # 7 Polarization: -106.26 SS G_CDS: -5.64 Total: -111.90 kcal Atomic # 8 Polarization: -63.65 SS G_CDS: -0.20 Total: -63.85 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.31 kcal Total: -83.41 -0.52 -83.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165621521.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.397 kcal (2) G-P(sol) polarization free energy of solvation -83.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds