Wall clock time and date at job start Tue Mar 31 2020 01:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.39732 * 120.20850 * 183.15336 * 3 2 1 5 5 C 1.37796 * 119.92348 * 179.70187 * 4 3 2 6 6 C 1.38580 * 120.35070 * 0.27462 * 5 4 3 7 7 C 1.38010 * 120.42237 * 0.02562 * 6 5 4 8 8 C 1.38897 * 120.07205 * 359.97438 * 7 6 5 9 9 N 1.39041 * 120.18002 * 180.02562 * 8 7 6 10 10 C 1.39792 * 119.99212 * 15.92304 * 9 8 7 11 11 C 1.38779 * 120.10868 * 30.63024 * 10 9 8 12 12 C 1.38179 * 119.99008 * 180.02562 * 11 10 9 13 13 C 1.38355 * 120.21039 * 0.02562 * 12 11 10 14 14 C 1.38176 * 120.21285 * 359.97438 * 13 12 11 15 15 C 1.38730 * 120.00332 * 359.68224 * 14 13 12 16 16 O 1.35782 * 120.10076 * 180.29246 * 15 14 13 17 17 C 1.34800 * 117.00334 * 5.78738 * 16 15 14 18 18 H 1.07996 * 119.99974 * 354.86897 * 17 16 15 19 19 C 1.38628 * 120.00353 * 174.86384 * 17 16 15 20 20 N 1.31583 * 119.99441 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00266 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47057 * 90.00440 * 21 19 17 23 23 H 1.48501 * 109.46941 * 210.00507 * 21 19 17 24 24 H 1.48503 * 109.47117 * 330.00228 * 21 19 17 25 25 H 1.07998 * 120.03423 * 359.97438 * 4 3 2 26 26 H 1.07995 * 119.82613 * 180.25945 * 5 4 3 27 27 H 1.07997 * 119.78957 * 179.97438 * 6 5 4 28 28 H 1.08009 * 119.95791 * 179.97438 * 7 6 5 29 29 H 0.96994 * 120.00561 * 195.92674 * 9 8 7 30 30 H 1.07992 * 120.00651 * 0.02562 * 11 10 9 31 31 H 1.08003 * 119.89458 * 180.02562 * 12 11 10 32 32 H 1.08001 * 119.89752 * 179.97438 * 13 12 11 33 33 H 1.07995 * 119.99841 * 179.97438 * 14 13 12 34 34 H 0.97004 * 119.99277 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2704 1.2067 0.0664 5 6 4.6484 1.2001 0.0723 6 6 5.3432 0.0029 0.0068 7 6 4.6639 -1.1963 -0.0655 8 6 3.2750 -1.2101 -0.0725 9 7 2.5884 -2.4170 -0.1447 10 6 3.2542 -3.6168 0.1223 11 6 4.3102 -3.6417 1.0224 12 6 4.9670 -4.8289 1.2840 13 6 4.5757 -5.9952 0.6508 14 6 3.5254 -5.9802 -0.2469 15 6 2.8552 -4.7946 -0.5109 16 8 1.8190 -4.7788 -1.3882 17 6 1.4135 -5.9674 -1.8779 18 1 1.9601 -6.8665 -1.6345 19 6 0.2950 -6.0358 -2.6939 20 7 -0.3707 -4.9403 -2.9908 21 14 -0.2673 -7.6831 -3.3720 22 1 -1.2266 -8.3066 -2.4253 23 1 -0.9301 -7.4777 -4.6849 24 1 0.9078 -8.5744 -3.5448 25 1 2.7340 2.1426 0.1176 26 1 5.1897 2.1329 0.1279 27 1 6.4231 0.0083 0.0116 28 1 5.2130 -2.1250 -0.1166 29 1 1.6476 -2.4264 -0.3804 30 1 4.6187 -2.7332 1.5182 31 1 5.7883 -4.8465 1.9851 32 1 5.0928 -6.9202 0.8588 33 1 3.2231 -6.8925 -0.7396 34 1 -1.1532 -4.9881 -3.5621 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212600344.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:39 Heat of formation + Delta-G solvation = 64.212710 kcal Electronic energy + Delta-G solvation = -20371.526777 eV Core-core repulsion = 17235.431343 eV Total energy + Delta-G solvation = -3136.095434 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.18432 -38.86008 -36.71002 -36.07205 -35.07151 -32.39405 -31.31945 -30.05162 -29.34452 -27.67670 -25.50135 -23.78028 -22.66544 -21.66779 -20.88493 -18.74823 -18.03853 -17.55777 -16.97343 -16.10345 -15.03280 -14.80425 -14.61748 -14.46788 -14.18584 -13.88484 -13.82516 -13.53557 -13.17523 -12.87266 -12.81771 -12.56287 -12.22636 -11.78042 -11.63376 -11.55293 -11.30616 -11.06917 -10.89694 -10.87716 -10.58701 -10.41977 -9.56310 -8.94233 -8.85115 -8.52643 -7.67095 -6.75875 -6.54043 -4.12568 0.98764 1.45192 2.11098 2.25011 2.94923 3.07517 3.08496 3.13451 3.21010 3.59588 3.88487 4.07389 4.18758 4.43520 4.92886 4.94808 5.04234 5.06142 5.37338 5.47434 5.52802 5.61298 5.68664 5.90371 5.91767 6.07342 6.27443 6.32946 6.42748 6.53276 6.58544 6.74382 6.89007 6.98230 7.14370 7.25142 7.46733 7.74626 7.80213 7.88495 7.96626 8.90659 9.54882 10.62879 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.016359 B = 0.005580 C = 0.004401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.233465 B = 5016.722088 C = 6361.382423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C 0.255 3.745 3 C -0.113 4.113 4 C -0.027 4.027 5 C -0.186 4.186 6 C -0.048 4.048 7 C -0.195 4.195 8 C 0.263 3.737 9 N -0.651 5.651 10 C 0.080 3.920 11 C -0.114 4.114 12 C -0.187 4.187 13 C -0.089 4.089 14 C -0.213 4.213 15 C 0.128 3.872 16 O -0.176 6.176 17 C -0.392 4.392 18 H 0.094 0.906 19 C 0.040 3.960 20 N -0.859 5.859 21 Si 0.942 3.058 22 H -0.273 1.273 23 H -0.277 1.277 24 H -0.267 1.267 25 H 0.127 0.873 26 H 0.125 0.875 27 H 0.126 0.874 28 H 0.144 0.856 29 H 0.417 0.583 30 H 0.126 0.874 31 H 0.112 0.888 32 H 0.110 0.890 33 H 0.132 0.868 34 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.821 6.372 6.029 14.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.102 5.102 2 C -0.060 4.060 3 C -0.122 4.122 4 C -0.048 4.048 5 C -0.206 4.206 6 C -0.068 4.068 7 C -0.216 4.216 8 C 0.153 3.847 9 N -0.268 5.268 10 C -0.015 4.015 11 C -0.135 4.135 12 C -0.207 4.207 13 C -0.108 4.108 14 C -0.233 4.233 15 C 0.073 3.927 16 O -0.079 6.079 17 C -0.468 4.468 18 H 0.111 0.889 19 C -0.165 4.165 20 N -0.493 5.493 21 Si 0.767 3.233 22 H -0.198 1.198 23 H -0.202 1.202 24 H -0.191 1.191 25 H 0.145 0.855 26 H 0.143 0.857 27 H 0.144 0.856 28 H 0.162 0.838 29 H 0.254 0.746 30 H 0.144 0.856 31 H 0.130 0.870 32 H 0.128 0.872 33 H 0.149 0.851 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.746 6.477 5.796 13.059 hybrid contribution -0.283 -0.965 -0.526 1.135 sum 9.463 5.513 5.270 12.154 Atomic orbital electron populations 1.81256 1.12001 1.06654 1.10241 1.25605 0.92607 0.94281 0.93459 1.15559 0.84184 0.93612 1.18806 1.20847 0.94191 0.95425 0.94381 1.20766 0.93402 0.98201 1.08236 1.21102 0.99835 0.91645 0.94204 1.21123 0.91688 0.99971 1.08867 1.17793 0.91658 0.84372 0.90872 1.42014 1.12896 1.01634 1.70218 1.16900 0.99772 0.83817 1.01061 1.20672 0.96923 0.98726 0.97162 1.20457 1.03185 0.92409 1.04643 1.20777 0.96346 0.97413 0.96297 1.21030 0.99934 0.98180 1.04163 1.19146 0.90865 0.92539 0.90195 1.83920 1.41338 1.33173 1.49471 1.21306 1.11699 0.84083 1.29744 0.88908 1.25307 0.95149 0.99346 0.96663 1.70039 1.17718 1.27382 1.34161 0.85689 0.79199 0.79943 0.78487 1.19830 1.20213 1.19110 0.85466 0.85707 0.85580 0.83807 0.74578 0.85620 0.87011 0.87194 0.85080 0.91858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -8.34 18.54 41.84 0.78 -7.57 16 2 C 0.25 4.42 14.17 -22.48 -0.32 4.10 16 3 C -0.11 -1.68 5.76 -106.60 -0.61 -2.29 16 4 C -0.03 -0.31 9.75 -39.19 -0.38 -0.70 16 5 C -0.19 -1.84 10.02 -39.62 -0.40 -2.23 16 6 C -0.05 -0.50 10.03 -39.54 -0.40 -0.90 16 7 C -0.19 -2.62 7.68 -39.42 -0.30 -2.93 16 8 C 0.26 4.20 6.33 -83.53 -0.53 3.67 16 9 N -0.65 -12.51 5.23 -8.09 -0.04 -12.56 16 10 C 0.08 1.59 6.11 -83.54 -0.51 1.08 16 11 C -0.11 -1.88 7.40 -39.40 -0.29 -2.18 16 12 C -0.19 -2.92 10.04 -39.56 -0.40 -3.32 16 13 C -0.09 -1.50 10.04 -39.56 -0.40 -1.90 16 14 C -0.21 -4.34 9.16 -39.42 -0.36 -4.70 16 15 C 0.13 2.92 6.67 -38.91 -0.26 2.66 16 16 O -0.18 -4.76 9.25 0.04 0.00 -4.76 16 17 C -0.39 -10.59 9.49 30.88 0.29 -10.30 16 18 H 0.09 2.30 5.21 -52.49 -0.27 2.03 16 19 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 20 N -0.86 -24.88 13.67 55.48 0.76 -24.12 16 21 Si 0.94 20.23 29.55 -169.99 -5.02 15.21 16 22 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 23 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 24 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 25 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 26 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 27 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 28 H 0.14 1.97 5.42 -52.48 -0.28 1.69 16 29 H 0.42 8.93 7.47 -40.82 -0.30 8.63 16 30 H 0.13 1.79 6.00 -52.49 -0.32 1.48 16 31 H 0.11 1.41 8.06 -52.48 -0.42 0.98 16 32 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 33 H 0.13 2.67 5.64 -52.49 -0.30 2.38 16 34 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 304.03 15.07 4.58 4.58 Total: -1.00 -30.39 304.03 -6.63 -37.02 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -2.72 Total: 11.14 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: -4.96 Total: -18.94 kcal Atomic # 7 Polarization: -45.74 SS G_CDS: 1.49 Total: -44.24 kcal Atomic # 8 Polarization: -4.76 SS G_CDS: 0.00 Total: -4.76 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.39 -6.63 -37.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212600344.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.231 kcal (2) G-P(sol) polarization free energy of solvation -30.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds