Wall clock time and date at job start Tue Mar 31 2020 01:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 O 1.42899 * 109.47307 * 124.80347 * 3 2 1 5 5 C 1.35795 * 117.00597 * 179.86526 * 4 3 2 6 6 C 1.38619 * 120.11959 * 4.83254 * 5 4 3 7 7 C 1.38155 * 120.06113 * 180.02562 * 6 5 4 8 8 C 1.38432 * 120.32543 * 0.02562 * 7 6 5 9 9 C 1.37949 * 120.25563 * 359.97438 * 8 7 6 10 10 C 1.39398 * 119.92495 * 359.97438 * 9 8 7 11 11 C 1.48192 * 120.15916 * 179.97438 * 10 9 8 12 12 C 1.39971 * 119.60801 * 313.15233 * 11 10 9 13 13 C 1.38662 * 119.45603 * 179.75012 * 12 11 10 14 14 C 1.38314 * 118.69811 * 0.51703 * 13 12 11 15 15 C 1.40674 * 119.19700 * 359.72402 * 14 13 12 16 16 C 1.41368 * 119.76571 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99780 * 348.90955 * 16 15 14 18 18 C 1.40015 * 120.00016 * 168.91920 * 16 15 14 19 19 N 1.30750 * 119.99657 * 161.93534 * 18 16 15 20 20 Si 1.86796 * 119.99873 * 341.93167 * 18 16 15 21 21 H 1.48499 * 109.46917 * 85.18526 * 20 18 16 22 22 H 1.48503 * 109.46958 * 205.17758 * 20 18 16 23 23 H 1.48490 * 109.47469 * 325.18262 * 20 18 16 24 24 N 1.32254 * 119.61352 * 133.42679 * 11 10 9 25 25 H 1.08999 * 109.47226 * 4.80474 * 3 2 1 26 26 H 1.09001 * 109.47612 * 244.80239 * 3 2 1 27 27 H 1.07991 * 119.97189 * 0.27948 * 6 5 4 28 28 H 1.08005 * 119.83644 * 179.97438 * 7 6 5 29 29 H 1.08003 * 119.87313 * 180.02562 * 8 7 6 30 30 H 1.07999 * 120.04026 * 180.02562 * 9 8 7 31 31 H 1.08003 * 120.27614 * 0.02562 * 12 11 10 32 32 H 1.08000 * 120.64942 * 180.24006 * 13 12 11 33 33 H 1.08002 * 120.40465 * 179.70893 * 14 13 12 34 34 H 0.96998 * 119.99428 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 8 3.0840 0.7698 -1.1062 5 6 4.4301 0.8744 -1.2508 6 6 5.2769 0.1700 -0.4091 7 6 6.6463 0.2777 -0.5569 8 6 7.1813 1.0880 -1.5436 9 6 6.3509 1.7948 -2.3885 10 6 4.9676 1.6932 -2.2495 11 6 4.0707 2.4506 -3.1539 12 6 4.3214 3.8054 -3.4010 13 6 3.4832 4.5098 -4.2518 14 6 2.4118 3.8495 -4.8254 15 6 2.2090 2.4882 -4.5343 16 6 1.1180 1.8014 -5.1143 17 1 0.3454 2.3526 -5.6298 18 6 1.0389 0.4067 -5.0203 19 7 -0.1012 -0.1989 -5.2276 20 14 2.5622 -0.5889 -4.5989 21 1 2.7244 -0.6449 -3.1238 22 1 2.4167 -1.9667 -5.1335 23 1 3.7564 0.0534 -5.2041 24 7 3.0398 1.8401 -3.7138 25 1 2.9717 -1.0232 -0.0861 26 1 2.9712 0.4383 0.9299 27 1 4.8658 -0.4667 0.3602 28 1 7.3027 -0.2724 0.1011 29 1 8.2529 1.1664 -1.6529 30 1 6.7720 2.4257 -3.1574 31 1 5.1633 4.2969 -2.9362 32 1 3.6610 5.5547 -4.4591 33 1 1.7387 4.3727 -5.4886 34 1 -0.1559 -1.1652 -5.1629 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243585198.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:21:13 Heat of formation + Delta-G solvation = 44.230642 kcal Electronic energy + Delta-G solvation = -21009.898886 eV Core-core repulsion = 17872.936965 eV Total energy + Delta-G solvation = -3136.961921 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.16004 -38.42041 -37.37558 -36.09066 -33.74686 -32.15115 -31.10242 -30.15396 -29.33734 -28.07905 -25.66505 -23.38382 -22.31707 -21.26056 -20.54665 -18.14570 -18.00625 -17.59634 -16.22472 -16.10563 -15.33013 -15.07037 -14.74762 -14.53856 -14.12486 -13.60876 -13.47274 -13.24274 -12.73348 -12.70334 -12.55684 -12.35777 -12.07238 -12.03756 -11.60109 -11.51457 -11.05572 -10.84536 -10.78750 -10.60182 -10.23541 -10.07856 -9.27889 -8.91931 -8.49702 -8.17371 -7.76696 -7.50347 -6.90566 -4.64399 1.32845 1.58787 2.30588 2.57100 2.71028 2.80810 3.43963 3.55025 3.61601 3.64540 3.94842 4.15123 4.41815 4.55093 4.77394 4.93548 4.97953 5.05104 5.14498 5.41728 5.48124 5.62943 5.78920 5.91404 6.05867 6.27663 6.37305 6.41893 6.57454 6.59475 6.69574 6.88910 6.98787 7.15347 7.36460 7.48521 7.53565 7.60327 7.86897 8.15084 8.57033 8.62038 9.58733 10.01884 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.012489 B = 0.009207 C = 0.006855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.431541 B = 3040.447564 C = 4083.586042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C 0.209 3.791 3 C 0.155 3.845 4 O -0.273 6.273 5 C 0.154 3.846 6 C -0.217 4.217 7 C -0.084 4.084 8 C -0.160 4.160 9 C -0.065 4.065 10 C -0.049 4.049 11 C 0.205 3.795 12 C -0.299 4.299 13 C -0.049 4.049 14 C -0.259 4.259 15 C 0.247 3.753 16 C -0.413 4.413 17 H 0.094 0.906 18 C 0.090 3.910 19 N -0.794 5.794 20 Si 0.982 3.018 21 H -0.254 1.254 22 H -0.331 1.331 23 H -0.271 1.271 24 N -0.541 5.541 25 H 0.104 0.896 26 H 0.105 0.895 27 H 0.129 0.871 28 H 0.122 0.878 29 H 0.123 0.877 30 H 0.131 0.869 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.897 -0.948 9.944 16.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.071 5.071 2 C -0.110 4.110 3 C 0.077 3.923 4 O -0.184 6.184 5 C 0.108 3.892 6 C -0.236 4.236 7 C -0.103 4.103 8 C -0.178 4.178 9 C -0.084 4.084 10 C -0.050 4.050 11 C 0.063 3.937 12 C -0.322 4.322 13 C -0.072 4.072 14 C -0.281 4.281 15 C 0.123 3.877 16 C -0.443 4.443 17 H 0.112 0.888 18 C -0.134 4.134 19 N -0.416 5.416 20 Si 0.815 3.185 21 H -0.179 1.179 22 H -0.264 1.264 23 H -0.197 1.197 24 N -0.258 5.258 25 H 0.122 0.878 26 H 0.123 0.877 27 H 0.147 0.853 28 H 0.140 0.860 29 H 0.141 0.859 30 H 0.149 0.851 31 H 0.120 0.880 32 H 0.121 0.879 33 H 0.124 0.876 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 10.605 -1.865 9.902 14.628 hybrid contribution 1.056 0.389 -0.001 1.125 sum 11.660 -1.476 9.901 15.368 Atomic orbital electron populations 1.81213 1.12361 1.07225 1.06290 1.28264 0.94226 0.94093 0.94391 1.19715 0.82556 0.98611 0.91449 1.86438 1.19409 1.67628 1.44947 1.18920 0.81539 0.94214 0.94534 1.21135 0.94506 1.04814 1.03106 1.20872 0.94061 0.97766 0.97583 1.20924 0.99595 0.99891 0.97419 1.21068 0.91009 0.97998 0.98341 1.18203 0.92639 0.98367 0.95834 1.19117 0.91296 0.90311 0.92954 1.21021 1.05600 0.95019 1.10576 1.20856 0.94087 0.97691 0.94614 1.21661 1.01813 0.96577 1.08061 1.18500 0.90438 0.89908 0.88812 1.19475 1.04327 0.92014 1.28469 0.88759 1.26359 0.98499 0.99094 0.89447 1.69678 1.26727 1.12176 1.33022 0.84864 0.80012 0.72731 0.80891 1.17947 1.26384 1.19723 1.66932 1.06691 1.37676 1.14485 0.87794 0.87715 0.85312 0.85979 0.85940 0.85067 0.87969 0.87906 0.87623 0.90246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -7.56 18.54 42.15 0.78 -6.78 16 2 C 0.21 3.43 15.82 -20.76 -0.33 3.11 16 3 C 0.16 1.98 5.23 34.37 0.18 2.16 16 4 O -0.27 -5.05 8.01 -19.10 -0.15 -5.20 16 5 C 0.15 2.63 6.65 -38.83 -0.26 2.37 16 6 C -0.22 -2.72 9.04 -39.47 -0.36 -3.08 16 7 C -0.08 -0.95 10.03 -39.54 -0.40 -1.35 16 8 C -0.16 -1.94 10.03 -39.62 -0.40 -2.34 16 9 C -0.07 -0.99 9.41 -39.26 -0.37 -1.36 16 10 C -0.05 -0.92 5.63 -104.76 -0.59 -1.51 16 11 C 0.21 4.61 6.10 -82.95 -0.51 4.11 16 12 C -0.30 -6.19 9.47 -38.78 -0.37 -6.56 16 13 C -0.05 -1.02 10.15 -39.40 -0.40 -1.42 16 14 C -0.26 -6.14 9.83 -38.63 -0.38 -6.52 16 15 C 0.25 6.57 6.21 -85.01 -0.53 6.04 16 16 C -0.41 -11.62 9.64 -37.73 -0.36 -11.99 16 17 H 0.09 2.70 8.06 -52.49 -0.42 2.27 16 18 C 0.09 2.49 5.50 -17.35 -0.10 2.40 16 19 N -0.79 -22.14 13.92 55.55 0.77 -21.37 16 20 Si 0.98 24.68 25.36 -169.99 -4.31 20.37 16 21 H -0.25 -6.22 6.13 56.52 0.35 -5.87 16 22 H -0.33 -8.10 7.11 56.52 0.40 -7.70 16 23 H -0.27 -7.10 6.98 56.52 0.39 -6.70 16 24 N -0.54 -13.84 4.67 -7.69 -0.04 -13.87 16 25 H 0.10 1.01 7.45 -51.93 -0.39 0.63 16 26 H 0.11 0.89 7.87 -51.93 -0.41 0.48 16 27 H 0.13 1.15 6.30 -52.49 -0.33 0.82 16 28 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 29 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 30 H 0.13 1.82 7.97 -52.49 -0.42 1.40 16 31 H 0.10 1.82 7.97 -52.48 -0.42 1.40 16 32 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 33 H 0.11 2.35 8.06 -52.49 -0.42 1.92 16 34 H 0.29 7.36 8.29 -40.82 -0.34 7.03 16 LS Contribution 305.60 15.07 4.61 4.61 Total: -1.00 -33.09 305.60 -6.77 -39.86 By element: Atomic # 1 Polarization: 1.60 SS G_CDS: -3.27 Total: -1.67 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: -5.16 Total: -15.94 kcal Atomic # 7 Polarization: -43.54 SS G_CDS: 1.52 Total: -42.02 kcal Atomic # 8 Polarization: -5.05 SS G_CDS: -0.15 Total: -5.20 kcal Atomic # 14 Polarization: 24.68 SS G_CDS: -4.31 Total: 20.37 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -33.09 -6.77 -39.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243585198.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.094 kcal (2) G-P(sol) polarization free energy of solvation -33.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds