Wall clock time and date at job start Tue Mar 31 2020 01:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 O 1.42899 * 109.47307 * 124.80347 * 3 2 1 5 5 C 1.35795 * 117.00597 * 179.86526 * 4 3 2 6 6 C 1.38619 * 120.11959 * 4.83254 * 5 4 3 7 7 C 1.38155 * 120.06113 * 180.02562 * 6 5 4 8 8 C 1.38432 * 120.32543 * 0.02562 * 7 6 5 9 9 C 1.37949 * 120.25563 * 359.97438 * 8 7 6 10 10 C 1.39398 * 119.92495 * 359.97438 * 9 8 7 11 11 C 1.48192 * 120.15916 * 179.97438 * 10 9 8 12 12 C 1.39971 * 119.60801 * 313.15233 * 11 10 9 13 13 C 1.38662 * 119.45603 * 179.75012 * 12 11 10 14 14 C 1.38314 * 118.69811 * 0.51703 * 13 12 11 15 15 C 1.40674 * 119.19700 * 359.72402 * 14 13 12 16 16 C 1.41368 * 119.76571 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99780 * 348.90955 * 16 15 14 18 18 C 1.40015 * 120.00016 * 168.91920 * 16 15 14 19 19 N 1.30750 * 119.99657 * 161.93534 * 18 16 15 20 20 Si 1.86796 * 119.99873 * 341.93167 * 18 16 15 21 21 H 1.48499 * 109.46917 * 85.18526 * 20 18 16 22 22 H 1.48503 * 109.46958 * 205.17758 * 20 18 16 23 23 H 1.48490 * 109.47469 * 325.18262 * 20 18 16 24 24 N 1.32254 * 119.61352 * 133.42679 * 11 10 9 25 25 H 1.08999 * 109.47226 * 4.80474 * 3 2 1 26 26 H 1.09001 * 109.47612 * 244.80239 * 3 2 1 27 27 H 1.07991 * 119.97189 * 0.27948 * 6 5 4 28 28 H 1.08005 * 119.83644 * 179.97438 * 7 6 5 29 29 H 1.08003 * 119.87313 * 180.02562 * 8 7 6 30 30 H 1.07999 * 120.04026 * 180.02562 * 9 8 7 31 31 H 1.08003 * 120.27614 * 0.02562 * 12 11 10 32 32 H 1.08000 * 120.64942 * 180.24006 * 13 12 11 33 33 H 1.08002 * 120.40465 * 179.70893 * 14 13 12 34 34 H 0.96998 * 119.99428 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 8 3.0840 0.7698 -1.1062 5 6 4.4301 0.8744 -1.2508 6 6 5.2769 0.1700 -0.4091 7 6 6.6463 0.2777 -0.5569 8 6 7.1813 1.0880 -1.5436 9 6 6.3509 1.7948 -2.3885 10 6 4.9676 1.6932 -2.2495 11 6 4.0707 2.4506 -3.1539 12 6 4.3214 3.8054 -3.4010 13 6 3.4832 4.5098 -4.2518 14 6 2.4118 3.8495 -4.8254 15 6 2.2090 2.4882 -4.5343 16 6 1.1180 1.8014 -5.1143 17 1 0.3454 2.3526 -5.6298 18 6 1.0389 0.4067 -5.0203 19 7 -0.1012 -0.1989 -5.2276 20 14 2.5622 -0.5889 -4.5989 21 1 2.7244 -0.6449 -3.1238 22 1 2.4167 -1.9667 -5.1335 23 1 3.7564 0.0534 -5.2041 24 7 3.0398 1.8401 -3.7138 25 1 2.9717 -1.0232 -0.0861 26 1 2.9712 0.4383 0.9299 27 1 4.8658 -0.4667 0.3602 28 1 7.3027 -0.2724 0.1011 29 1 8.2529 1.1664 -1.6529 30 1 6.7720 2.4257 -3.1574 31 1 5.1633 4.2969 -2.9362 32 1 3.6610 5.5547 -4.4591 33 1 1.7387 4.3727 -5.4886 34 1 -0.1559 -1.1652 -5.1629 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243585198.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:21:13 Heat of formation + Delta-G solvation = 23.542687 kcal Electronic energy + Delta-G solvation = -21010.795983 eV Core-core repulsion = 17872.936965 eV Total energy + Delta-G solvation = -3137.859018 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.33305 -40.10667 -38.52661 -37.40344 -35.69132 -33.60748 -32.92961 -31.19609 -30.76739 -29.22317 -27.52791 -24.74865 -23.66937 -22.74853 -22.03131 -19.61232 -19.22977 -19.16107 -17.64957 -17.23259 -16.66585 -16.50304 -16.48145 -16.08021 -15.41207 -14.99633 -14.72017 -14.61150 -14.50471 -14.32291 -14.00702 -13.91364 -13.50347 -13.25024 -13.14406 -12.86026 -12.64020 -12.53219 -12.15821 -12.05787 -11.86934 -11.68141 -11.24628 -10.42737 -10.11310 -9.63237 -9.46744 -8.95422 -8.89069 -6.69931 0.14116 0.57749 0.77889 1.01640 1.10236 1.41032 1.57140 1.58006 1.60155 2.41747 2.52636 2.56225 2.92440 3.05899 3.59946 3.66950 3.97632 4.08695 4.19577 4.22669 4.32013 4.46879 4.58479 4.61201 4.72679 4.78197 4.82245 4.97639 5.14505 5.28794 5.43240 5.52053 5.58530 5.67852 5.74500 5.94479 5.99084 6.11843 6.30776 6.51968 6.58328 6.65908 7.72625 8.03192 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.012489 B = 0.009207 C = 0.006855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.431541 B = 3040.447564 C = 4083.586042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C 0.229 3.771 3 C 0.147 3.853 4 O -0.322 6.322 5 C 0.135 3.865 6 C -0.208 4.208 7 C -0.068 4.068 8 C -0.154 4.154 9 C -0.071 4.071 10 C -0.101 4.101 11 C 0.191 3.809 12 C -0.282 4.282 13 C -0.041 4.041 14 C -0.284 4.284 15 C 0.232 3.768 16 C -0.460 4.460 17 H 0.066 0.934 18 C 0.058 3.942 19 N -0.835 5.835 20 Si 1.034 2.966 21 H -0.244 1.244 22 H -0.324 1.324 23 H -0.291 1.291 24 N -0.557 5.557 25 H 0.142 0.858 26 H 0.156 0.844 27 H 0.170 0.830 28 H 0.167 0.833 29 H 0.157 0.843 30 H 0.135 0.865 31 H 0.140 0.860 32 H 0.146 0.854 33 H 0.108 0.892 34 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.756 -1.166 12.960 22.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.139 5.139 2 C -0.089 4.089 3 C 0.070 3.930 4 O -0.234 6.234 5 C 0.089 3.911 6 C -0.227 4.227 7 C -0.086 4.086 8 C -0.172 4.172 9 C -0.090 4.090 10 C -0.103 4.103 11 C 0.050 3.950 12 C -0.304 4.304 13 C -0.065 4.065 14 C -0.306 4.306 15 C 0.107 3.893 16 C -0.492 4.492 17 H 0.084 0.916 18 C -0.161 4.161 19 N -0.460 5.460 20 Si 0.866 3.134 21 H -0.169 1.169 22 H -0.257 1.257 23 H -0.218 1.218 24 N -0.275 5.275 25 H 0.159 0.841 26 H 0.173 0.827 27 H 0.187 0.813 28 H 0.184 0.816 29 H 0.174 0.826 30 H 0.153 0.847 31 H 0.158 0.842 32 H 0.163 0.837 33 H 0.127 0.873 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 15.480 -2.072 12.937 20.280 hybrid contribution -0.118 0.661 -0.770 1.021 sum 15.361 -1.411 12.167 19.647 Atomic orbital electron populations 1.81222 1.14623 1.09590 1.08498 1.29151 0.95232 0.92076 0.92411 1.20390 0.79788 1.00645 0.92148 1.86325 1.20829 1.68989 1.47299 1.19162 0.81414 0.95046 0.95467 1.21592 0.94683 1.03777 1.02603 1.21466 0.94087 0.96215 0.96868 1.21348 1.00967 0.98537 0.96356 1.21223 0.89849 0.98725 0.99216 1.18326 0.93484 1.01225 0.97258 1.19934 0.90755 0.91645 0.92623 1.21614 1.05563 0.94599 1.08586 1.21340 0.92394 0.99621 0.93179 1.21833 1.03486 0.95981 1.09317 1.18673 0.90507 0.91192 0.88954 1.19432 1.05577 0.92653 1.31546 0.91571 1.26925 1.00211 0.99560 0.89369 1.69703 1.27721 1.12620 1.35997 0.84106 0.76713 0.71700 0.80914 1.16910 1.25691 1.21824 1.66859 1.07675 1.38466 1.14464 0.84107 0.82700 0.81293 0.81574 0.82579 0.84719 0.84204 0.83670 0.87338 0.89702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -18.21 18.54 20.00 0.37 -17.84 16 2 C 0.23 7.38 15.82 89.44 1.41 8.80 16 3 C 0.15 3.27 5.23 70.18 0.37 3.64 16 4 O -0.32 -11.27 8.01 -91.25 -0.73 -12.00 16 5 C 0.14 4.15 6.65 22.76 0.15 4.30 16 6 C -0.21 -4.00 9.04 22.34 0.20 -3.80 16 7 C -0.07 -1.07 10.03 22.30 0.22 -0.84 16 8 C -0.15 -2.83 10.03 22.25 0.22 -2.61 16 9 C -0.07 -1.89 9.41 22.48 0.21 -1.67 16 10 C -0.10 -3.55 5.63 -19.96 -0.11 -3.66 16 11 C 0.19 8.39 6.10 42.15 0.26 8.65 16 12 C -0.28 -10.99 9.47 22.79 0.22 -10.78 16 13 C -0.04 -1.66 10.15 22.39 0.23 -1.44 16 14 C -0.28 -13.80 9.83 22.88 0.22 -13.58 16 15 C 0.23 12.87 6.21 40.25 0.25 13.12 16 16 C -0.46 -27.91 9.64 23.47 0.23 -27.68 16 17 H 0.07 4.18 8.06 -2.91 -0.02 4.16 16 18 C 0.06 3.41 5.50 85.28 0.47 3.88 16 19 N -0.84 -49.63 13.92 21.83 0.30 -49.33 16 20 Si 1.03 52.81 25.36 68.60 1.74 54.55 16 21 H -0.24 -11.89 6.13 99.48 0.61 -11.28 16 22 H -0.32 -15.78 7.11 99.48 0.71 -15.07 16 23 H -0.29 -15.53 6.98 99.48 0.69 -14.83 16 24 N -0.56 -28.94 4.67 -178.24 -0.83 -29.77 16 25 H 0.14 2.07 7.45 -2.39 -0.02 2.05 16 26 H 0.16 1.84 7.87 -2.39 -0.02 1.82 16 27 H 0.17 1.76 6.30 -2.92 -0.02 1.74 16 28 H 0.17 1.22 8.06 -2.91 -0.02 1.19 16 29 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 30 H 0.13 3.29 7.97 -2.91 -0.02 3.26 16 31 H 0.14 4.38 7.97 -2.91 -0.02 4.36 16 32 H 0.15 4.55 8.06 -2.91 -0.02 4.52 16 33 H 0.11 5.04 8.06 -2.91 -0.02 5.02 16 34 H 0.29 15.88 8.29 -92.71 -0.77 15.11 16 Total: -1.00 -80.63 305.60 6.43 -74.21 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: 1.02 Total: 3.86 kcal Atomic # 6 Polarization: -28.23 SS G_CDS: 4.55 Total: -23.68 kcal Atomic # 7 Polarization: -96.78 SS G_CDS: -0.16 Total: -96.93 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: -0.73 Total: -12.00 kcal Atomic # 14 Polarization: 52.81 SS G_CDS: 1.74 Total: 54.55 kcal Total: -80.63 6.43 -74.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243585198.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.750 kcal (2) G-P(sol) polarization free energy of solvation -80.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds