Wall clock time and date at job start Tue Mar 31 2020 01:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86807 * 119.99861 * 2 1 4 4 H 1.48497 * 109.47122 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46869 * 299.99658 * 3 2 1 6 6 H 1.48492 * 109.47473 * 59.99801 * 3 2 1 7 7 C 1.38653 * 120.00432 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00317 * 179.97438 * 7 2 1 9 9 O 1.34821 * 119.99576 * 0.02562 * 7 2 1 10 10 C 1.35668 * 116.99748 * 185.05671 * 9 7 2 11 11 C 1.39030 * 119.94332 * 354.45304 * 10 9 7 12 12 C 1.37801 * 120.05691 * 180.02562 * 11 10 9 13 13 C 1.39508 * 119.94154 * 359.97438 * 12 11 10 14 14 C 1.48181 * 120.05576 * 179.97438 * 13 12 11 15 15 C 1.39806 * 119.33135 * 180.02562 * 14 13 12 16 16 C 1.36900 * 119.46224 * 180.02562 * 15 14 13 17 17 C 1.39863 * 118.27733 * 359.97438 * 16 15 14 18 18 C 1.46343 * 134.17451 * 180.02562 * 17 16 15 19 19 C 1.34283 * 106.89042 * 179.76127 * 18 17 16 20 20 N 1.36934 * 109.91978 * 0.24556 * 19 18 17 21 21 H 0.96997 * 124.99957 * 179.97438 * 20 19 18 22 22 C 1.37448 * 110.00002 * 359.97438 * 20 19 18 23 23 N 1.32469 * 119.32896 * 0.40063 * 14 13 12 24 24 C 1.39510 * 119.88854 * 0.25526 * 13 12 11 25 25 C 1.37806 * 119.93654 * 359.46937 * 24 13 12 26 26 H 0.97002 * 120.00053 * 0.02562 * 1 2 3 27 27 H 1.07998 * 119.97407 * 359.97438 * 11 10 9 28 28 H 1.08004 * 120.02868 * 180.02562 * 12 11 10 29 29 H 1.08001 * 120.26652 * 0.03378 * 15 14 13 30 30 H 1.08007 * 120.86467 * 180.02562 * 16 15 14 31 31 H 1.08000 * 126.55255 * 0.02869 * 18 17 16 32 32 H 1.08005 * 125.04046 * 180.24273 * 19 18 17 33 33 H 1.07995 * 120.03089 * 179.74336 * 24 13 12 34 34 H 1.07997 * 119.96788 * 180.24831 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.7095 1.3465 -0.0006 5 1 1.8908 2.3964 -1.2126 6 1 1.8908 2.3966 1.2124 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0001 9 8 1.3348 -2.3683 0.0005 10 6 2.0696 -3.5037 0.1076 11 6 3.4582 -3.4354 0.0946 12 6 4.2069 -4.5873 0.2027 13 6 3.5703 -5.8225 0.3258 14 6 4.3729 -7.0628 0.4416 15 6 3.7193 -8.2926 0.5637 16 6 4.4581 -9.4400 0.6714 17 6 5.8527 -9.3342 0.6542 18 6 6.9497 -10.2988 0.7419 19 6 8.0925 -9.5981 0.6631 20 7 7.8137 -8.2633 0.5376 21 1 8.4783 -7.5607 0.4638 22 6 6.4535 -8.0658 0.5317 23 7 5.6952 -6.9830 0.4349 24 6 2.1768 -5.8888 0.3337 25 6 1.4328 -4.7333 0.2311 26 1 -0.4850 0.8401 -0.0004 27 1 3.9505 -2.4790 -0.0011 28 1 5.2855 -4.5337 0.1930 29 1 2.6402 -8.3370 0.5728 30 1 3.9767 -10.4022 0.7664 31 1 6.8577 -11.3699 0.8454 32 1 9.0845 -10.0241 0.6941 33 1 1.6816 -6.8442 0.4247 34 1 0.3540 -4.7837 0.2412 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243589346.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:21 Heat of formation + Delta-G solvation = 71.095074 kcal Electronic energy + Delta-G solvation = -19677.470092 eV Core-core repulsion = 16541.673100 eV Total energy + Delta-G solvation = -3135.796992 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.36399 -39.16210 -37.92398 -36.11575 -32.89671 -32.41991 -30.70625 -30.28340 -29.63204 -27.42523 -25.46479 -23.65043 -22.81105 -21.47762 -20.78571 -20.51056 -18.36939 -17.98361 -17.09955 -16.41890 -15.83961 -14.94816 -14.90261 -14.46841 -14.20926 -14.06311 -13.70933 -13.33065 -13.20315 -13.03087 -12.77442 -12.53487 -12.47124 -11.87330 -11.74594 -11.29951 -11.06241 -10.89101 -10.65160 -10.47212 -10.34049 -9.44631 -9.08988 -8.99740 -8.41503 -8.24175 -8.14626 -6.99295 -6.55339 -4.11129 0.93433 1.47546 2.23632 2.35084 2.77487 2.80787 3.08989 3.10251 3.15879 3.89823 4.07757 4.55037 4.67266 4.70111 4.81918 5.01292 5.05744 5.18079 5.29737 5.40590 5.60304 5.72379 5.77592 5.83543 5.90631 6.17391 6.35319 6.36598 6.50287 6.52785 6.62834 6.88297 6.95338 7.06365 7.16881 7.31941 7.36537 7.42242 7.74067 7.90708 8.28184 8.90163 9.58210 10.61901 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.036909 B = 0.003268 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.449567 B = 8566.489946 C = 9310.628166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.040 3.960 3 Si 0.943 3.057 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.391 4.391 8 H 0.096 0.904 9 O -0.168 6.168 10 C 0.166 3.834 11 C -0.244 4.244 12 C -0.022 4.022 13 C -0.164 4.164 14 C 0.250 3.750 15 C -0.201 4.201 16 C -0.027 4.027 17 C -0.181 4.181 18 C -0.193 4.193 19 C 0.046 3.954 20 N -0.586 5.586 21 H 0.417 0.583 22 C 0.296 3.704 23 N -0.511 5.511 24 C -0.046 4.046 25 C -0.197 4.197 26 H 0.272 0.728 27 H 0.130 0.870 28 H 0.119 0.881 29 H 0.138 0.862 30 H 0.130 0.870 31 H 0.146 0.854 32 H 0.173 0.827 33 H 0.119 0.881 34 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.901 -16.345 1.268 20.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.467 4.467 8 H 0.114 0.886 9 O -0.070 6.070 10 C 0.110 3.890 11 C -0.263 4.263 12 C -0.042 4.042 13 C -0.167 4.167 14 C 0.106 3.894 15 C -0.222 4.222 16 C -0.053 4.053 17 C -0.188 4.188 18 C -0.219 4.219 19 C -0.079 4.079 20 N -0.193 5.193 21 H 0.254 0.746 22 C 0.062 3.938 23 N -0.225 5.225 24 C -0.065 4.065 25 C -0.216 4.216 26 H 0.082 0.918 27 H 0.147 0.853 28 H 0.137 0.863 29 H 0.155 0.845 30 H 0.148 0.852 31 H 0.163 0.837 32 H 0.190 0.810 33 H 0.137 0.863 34 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 12.040 -15.273 1.167 19.483 hybrid contribution 0.524 0.325 0.039 0.617 sum 12.564 -14.948 1.206 19.564 Atomic orbital electron populations 1.70045 1.06049 1.27892 1.45031 1.25349 0.95879 0.99022 0.96255 0.85609 0.79235 0.80057 0.78352 1.18937 1.20027 1.20008 1.21479 0.92065 0.80651 1.52487 0.88640 1.83941 1.34771 1.11690 1.76558 1.19545 0.90334 0.87934 0.91146 1.21145 0.93631 0.99077 1.12492 1.20884 0.99184 0.90892 0.93193 1.17936 0.91915 0.90687 1.16117 1.19492 0.86674 0.92613 0.90630 1.21590 1.01292 0.92432 1.06862 1.20556 0.91286 0.98590 0.94884 1.19833 0.94049 0.94145 1.10728 1.21588 0.90329 0.98525 1.11438 1.21759 0.99749 0.81751 1.04674 1.41548 1.04516 1.08072 1.65136 0.74610 1.18345 0.84899 0.90398 1.00153 1.66490 1.05900 1.30232 1.19893 1.20695 0.92098 0.97108 0.96604 1.20107 0.99683 0.90000 1.11851 0.91835 0.85261 0.86293 0.84466 0.85201 0.83659 0.80987 0.86335 0.86014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.57 13.67 55.48 0.76 -23.81 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 20.13 29.55 -169.99 -5.02 15.11 16 4 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 5 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 6 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 7 C -0.39 -10.71 9.48 30.89 0.29 -10.42 16 8 H 0.10 2.43 5.19 -52.49 -0.27 2.16 16 9 O -0.17 -4.69 9.75 0.33 0.00 -4.69 16 10 C 0.17 3.96 6.65 -39.00 -0.26 3.70 16 11 C -0.24 -5.37 9.15 -39.45 -0.36 -5.73 16 12 C -0.02 -0.44 9.56 -39.27 -0.38 -0.82 16 13 C -0.16 -3.07 5.88 -104.87 -0.62 -3.69 16 14 C 0.25 4.30 6.73 -82.92 -0.56 3.74 16 15 C -0.20 -2.87 9.39 -39.48 -0.37 -3.24 16 16 C -0.03 -0.35 10.16 -39.46 -0.40 -0.75 16 17 C -0.18 -2.48 6.39 -105.03 -0.67 -3.15 16 18 C -0.19 -2.01 11.08 -37.72 -0.42 -2.43 16 19 C 0.05 0.41 11.82 -16.67 -0.20 0.21 16 20 N -0.59 -6.52 6.06 -12.12 -0.07 -6.59 16 21 H 0.42 3.63 8.96 -40.82 -0.37 3.26 16 22 C 0.30 4.46 8.42 -155.72 -1.31 3.15 16 23 N -0.51 -8.87 9.42 -8.81 -0.08 -8.95 16 24 C -0.05 -0.81 9.40 -39.27 -0.37 -1.18 16 25 C -0.20 -4.06 9.98 -39.45 -0.39 -4.45 16 26 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 27 H 0.13 2.82 5.62 -52.49 -0.30 2.53 16 28 H 0.12 2.22 7.51 -52.48 -0.39 1.83 16 29 H 0.14 1.65 6.13 -52.49 -0.32 1.33 16 30 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 31 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 32 H 0.17 0.78 8.06 -52.48 -0.42 0.36 16 33 H 0.12 1.68 6.13 -52.49 -0.32 1.36 16 34 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 LS Contribution 299.43 15.07 4.51 4.51 Total: -1.00 -32.35 299.43 -8.81 -41.16 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -2.80 Total: 7.33 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: -6.11 Total: -24.07 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: 0.60 Total: -39.35 kcal Atomic # 8 Polarization: -4.69 SS G_CDS: 0.00 Total: -4.69 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -32.35 -8.81 -41.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243589346.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.253 kcal (2) G-P(sol) polarization free energy of solvation -32.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds