Wall clock time and date at job start Tue Mar 31 2020 01:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86807 * 119.99861 * 2 1 4 4 H 1.48497 * 109.47122 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46869 * 299.99658 * 3 2 1 6 6 H 1.48492 * 109.47473 * 59.99801 * 3 2 1 7 7 C 1.38653 * 120.00432 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00317 * 179.97438 * 7 2 1 9 9 O 1.34821 * 119.99576 * 0.02562 * 7 2 1 10 10 C 1.35668 * 116.99748 * 185.05671 * 9 7 2 11 11 C 1.39030 * 119.94332 * 354.45304 * 10 9 7 12 12 C 1.37801 * 120.05691 * 180.02562 * 11 10 9 13 13 C 1.39508 * 119.94154 * 359.97438 * 12 11 10 14 14 C 1.48181 * 120.05576 * 179.97438 * 13 12 11 15 15 C 1.39806 * 119.33135 * 180.02562 * 14 13 12 16 16 C 1.36900 * 119.46224 * 180.02562 * 15 14 13 17 17 C 1.39863 * 118.27733 * 359.97438 * 16 15 14 18 18 C 1.46343 * 134.17451 * 180.02562 * 17 16 15 19 19 C 1.34283 * 106.89042 * 179.76127 * 18 17 16 20 20 N 1.36934 * 109.91978 * 0.24556 * 19 18 17 21 21 H 0.96997 * 124.99957 * 179.97438 * 20 19 18 22 22 C 1.37448 * 110.00002 * 359.97438 * 20 19 18 23 23 N 1.32469 * 119.32896 * 0.40063 * 14 13 12 24 24 C 1.39510 * 119.88854 * 0.25526 * 13 12 11 25 25 C 1.37806 * 119.93654 * 359.46937 * 24 13 12 26 26 H 0.97002 * 120.00053 * 0.02562 * 1 2 3 27 27 H 1.07998 * 119.97407 * 359.97438 * 11 10 9 28 28 H 1.08004 * 120.02868 * 180.02562 * 12 11 10 29 29 H 1.08001 * 120.26652 * 0.03378 * 15 14 13 30 30 H 1.08007 * 120.86467 * 180.02562 * 16 15 14 31 31 H 1.08000 * 126.55255 * 0.02869 * 18 17 16 32 32 H 1.08005 * 125.04046 * 180.24273 * 19 18 17 33 33 H 1.07995 * 120.03089 * 179.74336 * 24 13 12 34 34 H 1.07997 * 119.96788 * 180.24831 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.7095 1.3465 -0.0006 5 1 1.8908 2.3964 -1.2126 6 1 1.8908 2.3966 1.2124 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0001 9 8 1.3348 -2.3683 0.0005 10 6 2.0696 -3.5037 0.1076 11 6 3.4582 -3.4354 0.0946 12 6 4.2069 -4.5873 0.2027 13 6 3.5703 -5.8225 0.3258 14 6 4.3729 -7.0628 0.4416 15 6 3.7193 -8.2926 0.5637 16 6 4.4581 -9.4400 0.6714 17 6 5.8527 -9.3342 0.6542 18 6 6.9497 -10.2988 0.7419 19 6 8.0925 -9.5981 0.6631 20 7 7.8137 -8.2633 0.5376 21 1 8.4783 -7.5607 0.4638 22 6 6.4535 -8.0658 0.5317 23 7 5.6952 -6.9830 0.4349 24 6 2.1768 -5.8888 0.3337 25 6 1.4328 -4.7333 0.2311 26 1 -0.4850 0.8401 -0.0004 27 1 3.9505 -2.4790 -0.0011 28 1 5.2855 -4.5337 0.1930 29 1 2.6402 -8.3370 0.5728 30 1 3.9767 -10.4022 0.7664 31 1 6.8577 -11.3699 0.8454 32 1 9.0845 -10.0241 0.6941 33 1 1.6816 -6.8442 0.4247 34 1 0.3540 -4.7837 0.2412 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243589346.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:21 Heat of formation + Delta-G solvation = 51.545974 kcal Electronic energy + Delta-G solvation = -19678.317804 eV Core-core repulsion = 16541.673100 eV Total energy + Delta-G solvation = -3136.644705 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.34494 -40.82638 -39.23236 -37.64985 -34.36872 -33.92414 -32.11207 -31.82601 -30.63845 -28.74015 -27.34768 -24.85764 -24.17445 -22.93951 -22.06188 -21.52986 -19.91974 -19.29298 -18.77452 -17.61729 -17.06003 -16.44606 -16.09723 -15.98788 -15.59132 -15.54932 -15.50677 -14.62211 -14.29327 -14.14533 -14.05529 -13.97556 -13.75627 -13.56017 -12.90950 -12.88919 -12.62287 -12.41350 -12.29474 -12.11136 -11.37467 -11.24111 -10.85257 -10.28360 -9.85690 -9.70953 -9.10038 -8.51616 -8.47418 -6.17396 -0.26002 0.41456 0.58911 0.94914 1.34923 1.43152 1.53032 1.88015 1.92041 2.15786 2.71142 3.00640 3.29655 3.41760 3.47082 3.77595 3.96138 4.01011 4.13321 4.20186 4.30185 4.47473 4.60807 4.72849 4.78082 4.82633 4.97009 5.04156 5.12462 5.23166 5.34650 5.50288 5.59187 5.63937 5.66656 5.74408 5.99074 6.07159 6.13145 6.50047 6.93789 7.15150 7.71102 8.71804 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.036909 B = 0.003268 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.449567 B = 8566.489946 C = 9310.628166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.019 4.019 3 Si 1.018 2.982 4 H -0.254 1.254 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.416 4.416 8 H 0.101 0.899 9 O -0.221 6.221 10 C 0.130 3.870 11 C -0.248 4.248 12 C -0.034 4.034 13 C -0.141 4.141 14 C 0.209 3.791 15 C -0.200 4.200 16 C -0.028 4.028 17 C -0.183 4.183 18 C -0.211 4.211 19 C 0.071 3.929 20 N -0.583 5.583 21 H 0.426 0.574 22 C 0.255 3.745 23 N -0.532 5.532 24 C -0.036 4.036 25 C -0.200 4.200 26 H 0.275 0.725 27 H 0.121 0.879 28 H 0.127 0.873 29 H 0.160 0.840 30 H 0.167 0.833 31 H 0.175 0.825 32 H 0.222 0.778 33 H 0.165 0.835 34 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.635 -20.169 1.680 24.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.217 4.217 3 Si 0.837 3.163 4 H -0.177 1.177 5 H -0.191 1.191 6 H -0.192 1.192 7 C -0.492 4.492 8 H 0.119 0.881 9 O -0.126 6.126 10 C 0.078 3.922 11 C -0.268 4.268 12 C -0.053 4.053 13 C -0.143 4.143 14 C 0.065 3.935 15 C -0.220 4.220 16 C -0.054 4.054 17 C -0.191 4.191 18 C -0.235 4.235 19 C -0.055 4.055 20 N -0.191 5.191 21 H 0.265 0.735 22 C 0.021 3.979 23 N -0.246 5.246 24 C -0.055 4.055 25 C -0.219 4.219 26 H 0.084 0.916 27 H 0.139 0.861 28 H 0.145 0.855 29 H 0.178 0.822 30 H 0.185 0.815 31 H 0.193 0.807 32 H 0.239 0.761 33 H 0.182 0.818 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 14.825 -19.147 1.580 24.267 hybrid contribution 0.049 0.895 -0.044 0.897 sum 14.874 -18.252 1.535 23.595 Atomic orbital electron populations 1.70173 1.07948 1.28951 1.48158 1.26576 0.96856 1.02656 0.95598 0.84537 0.78178 0.74845 0.78707 1.17712 1.19147 1.19169 1.21888 0.92591 0.81381 1.53323 0.88124 1.83919 1.35937 1.12592 1.80147 1.20061 0.91224 0.88185 0.92765 1.21173 0.93299 0.99623 1.12678 1.20999 0.99558 0.90897 0.93828 1.18345 0.92723 0.91207 1.12039 1.19389 0.87010 0.92779 0.94295 1.21799 1.02520 0.91669 1.06060 1.20992 0.91157 0.99654 0.93564 1.20413 0.95301 0.94574 1.08769 1.22008 0.89391 0.99740 1.12381 1.22659 1.01670 0.80328 1.00823 1.41781 1.03419 1.09523 1.64359 0.73515 1.18715 0.86541 0.90573 1.02049 1.66294 1.06460 1.32142 1.19724 1.21098 0.91717 0.97926 0.94711 1.20416 1.00482 0.89790 1.11229 0.91620 0.86133 0.85486 0.82210 0.81509 0.80730 0.76137 0.81788 0.85257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.71 13.67 21.61 0.30 -55.42 16 2 C -0.02 -1.05 5.49 84.83 0.47 -0.58 16 3 Si 1.02 42.97 29.55 68.60 2.03 44.99 16 4 H -0.25 -10.01 7.11 99.48 0.71 -9.31 16 5 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 6 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 7 C -0.42 -24.33 9.48 67.92 0.64 -23.69 16 8 H 0.10 5.48 5.19 -2.91 -0.02 5.46 16 9 O -0.22 -13.24 9.75 -21.74 -0.21 -13.45 16 10 C 0.13 6.52 6.65 22.65 0.15 6.67 16 11 C -0.25 -11.50 9.15 22.36 0.20 -11.29 16 12 C -0.03 -1.37 9.56 22.47 0.21 -1.15 16 13 C -0.14 -5.18 5.88 -20.02 -0.12 -5.30 16 14 C 0.21 6.85 6.73 42.07 0.28 7.13 16 15 C -0.20 -5.07 9.39 22.34 0.21 -4.86 16 16 C -0.03 -0.61 10.16 22.35 0.23 -0.38 16 17 C -0.18 -4.37 6.39 -20.13 -0.13 -4.50 16 18 C -0.21 -3.35 11.08 23.48 0.26 -3.09 16 19 C 0.07 0.89 11.82 82.99 0.98 1.87 16 20 N -0.58 -11.09 6.06 -192.25 -1.16 -12.26 16 21 H 0.43 6.27 8.96 -92.71 -0.83 5.44 16 22 C 0.26 7.11 8.42 133.98 1.13 8.24 16 23 N -0.53 -17.83 9.42 -181.79 -1.71 -19.55 16 24 C -0.04 -1.22 9.40 22.47 0.21 -1.01 16 25 C -0.20 -8.40 9.98 22.36 0.22 -8.18 16 26 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 27 H 0.12 5.65 5.62 -2.91 -0.02 5.63 16 28 H 0.13 4.85 7.51 -2.91 -0.02 4.83 16 29 H 0.16 3.15 6.13 -2.91 -0.02 3.14 16 30 H 0.17 2.31 8.06 -2.91 -0.02 2.29 16 31 H 0.18 1.69 8.06 -2.91 -0.02 1.67 16 32 H 0.22 0.53 8.06 -2.91 -0.02 0.51 16 33 H 0.16 4.07 6.13 -2.91 -0.02 4.05 16 34 H 0.13 5.14 8.06 -2.91 -0.02 5.12 16 Total: -1.00 -77.12 299.43 4.53 -72.60 By element: Atomic # 1 Polarization: 22.85 SS G_CDS: 0.34 Total: 23.19 kcal Atomic # 6 Polarization: -45.07 SS G_CDS: 4.96 Total: -40.11 kcal Atomic # 7 Polarization: -84.64 SS G_CDS: -2.58 Total: -87.22 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: -0.21 Total: -13.45 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 44.99 kcal Total: -77.12 4.53 -72.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243589346.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.141 kcal (2) G-P(sol) polarization free energy of solvation -77.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds