Wall clock time and date at job start Tue Mar 31 2020 01:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31567 * 1 3 3 Si 1.86803 * 119.99719 * 2 1 4 4 H 1.48502 * 109.46974 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47407 * 299.99755 * 3 2 1 6 6 H 1.48503 * 109.47012 * 60.00206 * 3 2 1 7 7 C 1.38634 * 120.00339 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00239 * 179.97438 * 7 2 1 9 9 O 1.34820 * 119.99653 * 0.02562 * 7 2 1 10 10 C 1.35700 * 116.99781 * 185.05144 * 9 7 2 11 11 C 1.39008 * 119.94600 * 354.44904 * 10 9 7 12 12 C 1.37827 * 120.05199 * 179.97438 * 11 10 9 13 13 C 1.39468 * 119.94757 * 0.02562 * 12 11 10 14 14 C 1.48271 * 120.05376 * 179.97438 * 13 12 11 15 15 C 1.39825 * 120.30000 * 359.97438 * 14 13 12 16 16 N 1.31336 * 121.10185 * 180.02562 * 15 14 13 17 17 C 1.33104 * 121.58362 * 0.02562 * 16 15 14 18 18 C 1.46385 * 133.56086 * 179.97438 * 17 16 15 19 19 C 1.34409 * 107.11034 * 180.02562 * 18 17 16 20 20 N 1.36632 * 109.95664 * 0.02562 * 19 18 17 21 21 H 0.96999 * 125.10843 * 179.97438 * 20 19 18 22 22 C 1.37707 * 109.78794 * 0.22542 * 20 19 18 23 23 C 1.38955 * 133.58642 * 180.39630 * 22 20 19 24 24 C 1.39466 * 119.89043 * 0.25638 * 13 12 11 25 25 C 1.37830 * 119.94143 * 359.46043 * 24 13 12 26 26 H 0.96997 * 119.99912 * 0.02562 * 1 2 3 27 27 H 1.07999 * 119.96847 * 359.97438 * 11 10 9 28 28 H 1.08008 * 120.02344 * 180.02562 * 12 11 10 29 29 H 1.07995 * 119.45216 * 0.04851 * 15 14 13 30 30 H 1.08000 * 126.44600 * 0.02562 * 18 17 16 31 31 H 1.07997 * 125.02518 * 179.97438 * 19 18 17 32 32 H 1.08002 * 120.89627 * 359.38379 * 23 22 20 33 33 H 1.08001 * 120.03070 * 179.72367 * 24 13 12 34 34 H 1.08007 * 119.97422 * 180.27908 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.7096 1.3465 0.0006 5 1 1.8909 2.3965 -1.2125 6 1 1.8908 2.3965 1.2126 7 6 2.0089 -1.2006 0.0005 8 1 3.0888 -1.2005 0.0001 9 8 1.3348 -2.3681 0.0005 10 6 2.0698 -3.5038 0.1075 11 6 3.4582 -3.4357 0.0944 12 6 4.2068 -4.5877 0.2034 13 6 3.5704 -5.8226 0.3265 14 6 4.3735 -7.0635 0.4435 15 6 5.7704 -7.0036 0.4305 16 7 6.4972 -8.0928 0.5325 17 6 5.9385 -9.2950 0.6515 18 6 6.4778 -10.6498 0.7797 19 6 5.4293 -11.4864 0.8653 20 7 4.2620 -10.7791 0.8021 21 1 3.3730 -11.1650 0.8430 22 6 4.5371 -9.4367 0.6657 23 6 3.7424 -8.3014 0.5642 24 6 2.1773 -5.8889 0.3336 25 6 1.4331 -4.7334 0.2301 26 1 -0.4850 0.8400 -0.0004 27 1 3.9505 -2.4792 -0.0014 28 1 5.2855 -4.5342 0.1936 29 1 6.2600 -6.0457 0.3354 30 1 7.5218 -10.9254 0.8013 31 1 5.4991 -12.5592 0.9681 32 1 2.6650 -8.3758 0.5758 33 1 1.6822 -6.8444 0.4243 34 1 0.3543 -4.7837 0.2400 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243590245.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:19:56 Heat of formation + Delta-G solvation = 66.618600 kcal Electronic energy + Delta-G solvation = -19640.005093 eV Core-core repulsion = 16504.013987 eV Total energy + Delta-G solvation = -3135.991107 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.41280 -39.22396 -37.93465 -36.34681 -32.99817 -32.30224 -30.68484 -30.21787 -29.71383 -27.38365 -25.48461 -23.89708 -22.81825 -21.65142 -20.79928 -20.51615 -18.27884 -17.80174 -17.26324 -16.71203 -15.81716 -15.09325 -14.85536 -14.54391 -14.30171 -14.11599 -13.75308 -13.46419 -13.17407 -13.13422 -12.67987 -12.61205 -12.37875 -12.13047 -11.75105 -11.55904 -11.13706 -11.08716 -10.72633 -10.49279 -10.11414 -9.47766 -9.15895 -9.01319 -8.42541 -8.33070 -8.17423 -6.97521 -6.57982 -4.14051 0.87955 1.42855 2.13651 2.26691 2.75398 2.95928 3.07499 3.08747 3.14209 3.87426 4.07174 4.29797 4.58971 4.70853 4.95511 4.99063 5.04447 5.08967 5.19400 5.28693 5.49615 5.50876 5.65220 5.80571 5.95910 6.06423 6.10580 6.39760 6.43719 6.50899 6.56064 6.79313 6.90193 7.04189 7.15294 7.25477 7.31043 7.34823 7.67073 7.87226 8.22359 8.87340 9.54841 10.59219 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.047923 B = 0.003105 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.131405 B = 9014.857513 C = 9583.341729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.040 3.960 3 Si 0.943 3.057 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.391 4.391 8 H 0.096 0.904 9 O -0.169 6.169 10 C 0.161 3.839 11 C -0.234 4.234 12 C -0.049 4.049 13 C -0.157 4.157 14 C -0.027 4.027 15 C 0.089 3.911 16 N -0.447 5.447 17 C 0.065 3.935 18 C -0.190 4.190 19 C 0.056 3.944 20 N -0.595 5.595 21 H 0.416 0.584 22 C 0.058 3.942 23 C -0.109 4.109 24 C -0.056 4.056 25 C -0.193 4.193 26 H 0.272 0.728 27 H 0.132 0.868 28 H 0.115 0.885 29 H 0.158 0.842 30 H 0.149 0.851 31 H 0.174 0.826 32 H 0.131 0.869 33 H 0.113 0.887 34 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.417 -17.349 1.409 18.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.165 4.165 3 Si 0.768 3.232 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.467 4.467 8 H 0.114 0.886 9 O -0.071 6.071 10 C 0.105 3.895 11 C -0.253 4.253 12 C -0.067 4.067 13 C -0.159 4.159 14 C -0.031 4.031 15 C -0.079 4.079 16 N -0.154 5.154 17 C -0.067 4.067 18 C -0.216 4.216 19 C -0.072 4.072 20 N -0.199 5.199 21 H 0.252 0.748 22 C -0.051 4.051 23 C -0.138 4.138 24 C -0.074 4.074 25 C -0.212 4.212 26 H 0.082 0.918 27 H 0.149 0.851 28 H 0.132 0.868 29 H 0.176 0.824 30 H 0.167 0.833 31 H 0.191 0.809 32 H 0.149 0.851 33 H 0.131 0.869 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 7.812 -17.193 1.392 18.936 hybrid contribution -0.931 0.546 0.021 1.080 sum 6.881 -16.647 1.413 18.069 Atomic orbital electron populations 1.70049 1.06070 1.27928 1.44986 1.25355 0.95889 0.99058 0.96229 0.85604 0.79235 0.80011 0.78374 1.18890 1.20014 1.20008 1.21467 0.92046 0.80639 1.52575 0.88624 1.83954 1.34724 1.11668 1.76707 1.19502 0.90329 0.87952 0.91691 1.21111 0.93665 0.99005 1.11519 1.20825 0.98618 0.91281 0.95995 1.18016 0.92503 0.90989 1.14384 1.19473 0.93981 0.92341 0.97278 1.22736 0.89991 0.96255 0.98935 1.67012 1.40201 0.97250 1.10960 1.20012 0.89049 0.92495 1.05110 1.21488 0.98804 0.89003 1.12284 1.21822 0.84201 0.97600 1.03596 1.41607 1.08491 1.04694 1.65114 0.74763 1.19006 0.96244 0.84989 1.04852 1.20416 0.99325 0.89197 1.04819 1.20666 0.92542 0.96824 0.97355 1.20136 0.99668 0.90136 1.11286 0.91818 0.85088 0.86752 0.82448 0.83282 0.80904 0.85123 0.86870 0.86219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.34 13.67 55.48 0.76 -23.59 16 2 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 19.83 29.55 -169.99 -5.02 14.80 16 4 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 5 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 6 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 7 C -0.39 -10.53 9.48 30.88 0.29 -10.23 16 8 H 0.10 2.37 5.19 -52.49 -0.27 2.09 16 9 O -0.17 -4.63 9.75 0.23 0.00 -4.63 16 10 C 0.16 3.72 6.65 -39.01 -0.26 3.46 16 11 C -0.23 -4.85 9.15 -39.45 -0.36 -5.21 16 12 C -0.05 -0.87 9.43 -39.27 -0.37 -1.24 16 13 C -0.16 -2.71 5.88 -104.86 -0.62 -3.33 16 14 C -0.03 -0.43 5.89 -104.72 -0.62 -1.05 16 15 C 0.09 1.38 10.58 -17.17 -0.18 1.20 16 16 N -0.45 -7.30 10.40 -9.58 -0.10 -7.40 16 17 C 0.07 0.97 7.51 -83.05 -0.62 0.35 16 18 C -0.19 -2.16 11.07 -37.66 -0.42 -2.58 16 19 C 0.06 0.47 11.81 -16.76 -0.20 0.27 16 20 N -0.59 -5.62 6.07 -10.65 -0.06 -5.69 16 21 H 0.42 2.56 8.96 -40.82 -0.37 2.20 16 22 C 0.06 0.78 7.28 -83.97 -0.61 0.16 16 23 C -0.11 -1.53 9.54 -38.86 -0.37 -1.90 16 24 C -0.06 -0.96 9.42 -39.27 -0.37 -1.33 16 25 C -0.19 -3.90 9.98 -39.44 -0.39 -4.29 16 26 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 27 H 0.13 2.70 5.62 -52.49 -0.30 2.40 16 28 H 0.11 1.69 6.20 -52.48 -0.33 1.37 16 29 H 0.16 2.15 6.18 -52.49 -0.32 1.82 16 30 H 0.15 1.42 8.06 -52.49 -0.42 0.99 16 31 H 0.17 0.70 8.06 -52.49 -0.42 0.28 16 32 H 0.13 1.56 6.29 -52.49 -0.33 1.23 16 33 H 0.11 1.60 6.24 -52.49 -0.33 1.27 16 34 H 0.12 2.31 8.06 -52.48 -0.42 1.88 16 LS Contribution 297.11 15.07 4.48 4.48 Total: -1.00 -32.17 297.11 -7.79 -39.96 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -2.64 Total: 6.81 kcal Atomic # 6 Polarization: -19.55 SS G_CDS: -5.19 Total: -24.75 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: 0.59 Total: -36.67 kcal Atomic # 8 Polarization: -4.63 SS G_CDS: 0.00 Total: -4.63 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.17 -7.79 -39.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243590245.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.576 kcal (2) G-P(sol) polarization free energy of solvation -32.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds