Wall clock time and date at job start Tue Mar 31 2020 01:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31567 * 1 3 3 Si 1.86803 * 119.99719 * 2 1 4 4 H 1.48502 * 109.46974 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47407 * 299.99755 * 3 2 1 6 6 H 1.48503 * 109.47012 * 60.00206 * 3 2 1 7 7 C 1.38634 * 120.00339 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00239 * 179.97438 * 7 2 1 9 9 O 1.34820 * 119.99653 * 0.02562 * 7 2 1 10 10 C 1.35700 * 116.99781 * 185.05144 * 9 7 2 11 11 C 1.39008 * 119.94600 * 354.44904 * 10 9 7 12 12 C 1.37827 * 120.05199 * 179.97438 * 11 10 9 13 13 C 1.39468 * 119.94757 * 0.02562 * 12 11 10 14 14 C 1.48271 * 120.05376 * 179.97438 * 13 12 11 15 15 C 1.39825 * 120.30000 * 359.97438 * 14 13 12 16 16 N 1.31336 * 121.10185 * 180.02562 * 15 14 13 17 17 C 1.33104 * 121.58362 * 0.02562 * 16 15 14 18 18 C 1.46385 * 133.56086 * 179.97438 * 17 16 15 19 19 C 1.34409 * 107.11034 * 180.02562 * 18 17 16 20 20 N 1.36632 * 109.95664 * 0.02562 * 19 18 17 21 21 H 0.96999 * 125.10843 * 179.97438 * 20 19 18 22 22 C 1.37707 * 109.78794 * 0.22542 * 20 19 18 23 23 C 1.38955 * 133.58642 * 180.39630 * 22 20 19 24 24 C 1.39466 * 119.89043 * 0.25638 * 13 12 11 25 25 C 1.37830 * 119.94143 * 359.46043 * 24 13 12 26 26 H 0.96997 * 119.99912 * 0.02562 * 1 2 3 27 27 H 1.07999 * 119.96847 * 359.97438 * 11 10 9 28 28 H 1.08008 * 120.02344 * 180.02562 * 12 11 10 29 29 H 1.07995 * 119.45216 * 0.04851 * 15 14 13 30 30 H 1.08000 * 126.44600 * 0.02562 * 18 17 16 31 31 H 1.07997 * 125.02518 * 179.97438 * 19 18 17 32 32 H 1.08002 * 120.89627 * 359.38379 * 23 22 20 33 33 H 1.08001 * 120.03070 * 179.72367 * 24 13 12 34 34 H 1.08007 * 119.97422 * 180.27908 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.7096 1.3465 0.0006 5 1 1.8909 2.3965 -1.2125 6 1 1.8908 2.3965 1.2126 7 6 2.0089 -1.2006 0.0005 8 1 3.0888 -1.2005 0.0001 9 8 1.3348 -2.3681 0.0005 10 6 2.0698 -3.5038 0.1075 11 6 3.4582 -3.4357 0.0944 12 6 4.2068 -4.5877 0.2034 13 6 3.5704 -5.8226 0.3265 14 6 4.3735 -7.0635 0.4435 15 6 5.7704 -7.0036 0.4305 16 7 6.4972 -8.0928 0.5325 17 6 5.9385 -9.2950 0.6515 18 6 6.4778 -10.6498 0.7797 19 6 5.4293 -11.4864 0.8653 20 7 4.2620 -10.7791 0.8021 21 1 3.3730 -11.1650 0.8430 22 6 4.5371 -9.4367 0.6657 23 6 3.7424 -8.3014 0.5642 24 6 2.1773 -5.8889 0.3336 25 6 1.4331 -4.7334 0.2301 26 1 -0.4850 0.8400 -0.0004 27 1 3.9505 -2.4792 -0.0014 28 1 5.2855 -4.5342 0.1936 29 1 6.2600 -6.0457 0.3354 30 1 7.5218 -10.9254 0.8013 31 1 5.4991 -12.5592 0.9681 32 1 2.6650 -8.3758 0.5758 33 1 1.6822 -6.8444 0.4243 34 1 0.3543 -4.7837 0.2400 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243590245.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:19:55 Heat of formation + Delta-G solvation = 45.931103 kcal Electronic energy + Delta-G solvation = -19640.902170 eV Core-core repulsion = 16504.013987 eV Total energy + Delta-G solvation = -3136.888184 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.38445 -40.81815 -39.20322 -37.81366 -34.49835 -33.87269 -32.13342 -31.37215 -30.80684 -28.74655 -27.28934 -25.08273 -24.12301 -23.09369 -21.97440 -21.58290 -19.90498 -18.99207 -18.84963 -17.77407 -17.15506 -16.39656 -16.16259 -15.90975 -15.84818 -15.55282 -15.41606 -14.67975 -14.41024 -14.26121 -13.99014 -13.74419 -13.69314 -13.54088 -13.15930 -13.04752 -12.65210 -12.61583 -12.31821 -12.09131 -11.32999 -11.20376 -10.77361 -10.30737 -9.85799 -9.65134 -9.14545 -8.49679 -8.41962 -6.15548 -0.28312 0.31462 0.57809 0.96663 1.36756 1.44600 1.54747 1.79045 2.15403 2.17205 2.74884 3.01337 3.26934 3.35407 3.45458 3.72188 3.85339 3.97258 4.01278 4.16002 4.30961 4.35993 4.50028 4.55495 4.70360 4.80401 4.94266 5.06166 5.07326 5.19191 5.27634 5.44662 5.52656 5.63601 5.66829 5.75343 6.00504 6.01896 6.12302 6.66237 6.95741 7.11577 7.74059 8.73680 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.047923 B = 0.003105 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.131405 B = 9014.857513 C = 9583.341729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.021 4.021 3 Si 1.018 2.982 4 H -0.250 1.250 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.413 4.413 8 H 0.105 0.895 9 O -0.225 6.225 10 C 0.121 3.879 11 C -0.239 4.239 12 C -0.054 4.054 13 C -0.128 4.128 14 C -0.060 4.060 15 C 0.083 3.917 16 N -0.476 5.476 17 C 0.045 3.955 18 C -0.229 4.229 19 C 0.097 3.903 20 N -0.580 5.580 21 H 0.435 0.565 22 C 0.040 3.960 23 C -0.092 4.092 24 C -0.052 4.052 25 C -0.200 4.200 26 H 0.273 0.727 27 H 0.125 0.875 28 H 0.145 0.855 29 H 0.167 0.833 30 H 0.161 0.839 31 H 0.228 0.772 32 H 0.154 0.846 33 H 0.153 0.847 34 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.178 -21.407 1.844 23.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.219 4.219 3 Si 0.837 3.163 4 H -0.173 1.173 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.489 4.489 8 H 0.122 0.878 9 O -0.131 6.131 10 C 0.070 3.930 11 C -0.258 4.258 12 C -0.071 4.071 13 C -0.129 4.129 14 C -0.064 4.064 15 C -0.084 4.084 16 N -0.184 5.184 17 C -0.087 4.087 18 C -0.254 4.254 19 C -0.032 4.032 20 N -0.185 5.185 21 H 0.275 0.725 22 C -0.069 4.069 23 C -0.120 4.120 24 C -0.069 4.069 25 C -0.219 4.219 26 H 0.083 0.917 27 H 0.143 0.857 28 H 0.163 0.837 29 H 0.184 0.816 30 H 0.179 0.821 31 H 0.244 0.756 32 H 0.172 0.828 33 H 0.170 0.830 34 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 9.592 -21.325 1.830 23.454 hybrid contribution -1.240 1.075 -0.058 1.642 sum 8.351 -20.250 1.773 21.976 Atomic orbital electron populations 1.70185 1.08031 1.28861 1.48509 1.26586 0.96835 1.02753 0.95730 0.84531 0.78363 0.74824 0.78535 1.17341 1.19365 1.19404 1.21907 0.92684 0.81299 1.53012 0.87769 1.83930 1.36067 1.12653 1.80446 1.20047 0.91557 0.87992 0.93404 1.21202 0.93034 0.99986 1.11583 1.21137 1.00130 0.90532 0.95350 1.18330 0.92750 0.91607 1.10218 1.19327 0.93964 0.92196 1.00864 1.22910 0.90141 0.96775 0.98566 1.67043 1.40866 0.98064 1.12448 1.20754 0.90525 0.93305 1.04119 1.21835 1.00595 0.87882 1.15077 1.22655 0.82577 0.99445 0.98482 1.41723 1.10067 1.03228 1.63496 0.72479 1.19019 0.95665 0.86634 1.05620 1.20675 1.00537 0.88808 1.01995 1.21035 0.92602 0.97337 0.95976 1.20390 1.00205 0.90182 1.11117 0.91745 0.85693 0.83726 0.81573 0.82113 0.75593 0.82820 0.82957 0.86099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.58 13.67 21.61 0.30 -55.29 16 2 C -0.02 -1.18 5.49 84.83 0.47 -0.72 16 3 Si 1.02 42.26 29.55 68.60 2.03 44.29 16 4 H -0.25 -9.58 7.11 99.48 0.71 -8.87 16 5 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 6 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 7 C -0.41 -23.61 9.48 67.91 0.64 -22.97 16 8 H 0.11 5.45 5.19 -2.91 -0.02 5.44 16 9 O -0.23 -13.26 9.75 -22.09 -0.22 -13.48 16 10 C 0.12 5.89 6.65 22.64 0.15 6.04 16 11 C -0.24 -10.20 9.15 22.36 0.20 -10.00 16 12 C -0.05 -1.87 9.43 22.47 0.21 -1.65 16 13 C -0.13 -4.16 5.88 -20.02 -0.12 -4.28 16 14 C -0.06 -1.74 5.89 -19.93 -0.12 -1.86 16 15 C 0.08 2.46 10.58 85.15 0.90 3.36 16 16 N -0.48 -14.82 10.40 -184.21 -1.92 -16.74 16 17 C 0.05 1.23 7.51 41.71 0.31 1.55 16 18 C -0.23 -4.35 11.07 23.52 0.26 -4.09 16 19 C 0.10 1.08 11.81 83.07 0.98 2.06 16 20 N -0.58 -7.88 6.07 -187.60 -1.14 -9.02 16 21 H 0.43 2.82 8.96 -92.71 -0.83 1.99 16 22 C 0.04 0.93 7.28 39.03 0.28 1.21 16 23 C -0.09 -2.25 9.54 22.74 0.22 -2.03 16 24 C -0.05 -1.69 9.42 22.47 0.21 -1.48 16 25 C -0.20 -8.20 9.98 22.36 0.22 -7.98 16 26 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 27 H 0.13 5.38 5.62 -2.91 -0.02 5.36 16 28 H 0.15 4.07 6.20 -2.91 -0.02 4.06 16 29 H 0.17 4.31 6.18 -2.91 -0.02 4.29 16 30 H 0.16 2.56 8.06 -2.91 -0.02 2.53 16 31 H 0.23 0.09 8.06 -2.91 -0.02 0.07 16 32 H 0.15 2.93 6.29 -2.91 -0.02 2.91 16 33 H 0.15 3.73 6.24 -2.91 -0.02 3.71 16 34 H 0.12 4.82 8.06 -2.91 -0.02 4.80 16 Total: -1.00 -76.74 297.11 4.23 -72.51 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: 0.34 Total: 20.57 kcal Atomic # 6 Polarization: -47.67 SS G_CDS: 4.83 Total: -42.84 kcal Atomic # 7 Polarization: -78.29 SS G_CDS: -2.76 Total: -81.05 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: -0.22 Total: -13.48 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -76.74 4.23 -72.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243590245.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.440 kcal (2) G-P(sol) polarization free energy of solvation -76.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds