Wall clock time and date at job start Tue Mar 31 2020 02:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29718 * 126.30842 * 2 1 4 4 O 1.41320 * 109.79114 * 180.02562 * 3 2 1 5 5 C 1.34823 * 109.38910 * 0.02562 * 4 3 2 6 6 C 1.39197 * 133.20498 * 179.97438 * 5 4 3 7 7 C 1.36399 * 120.26900 * 180.02562 * 6 5 4 8 8 C 1.40180 * 120.59547 * 0.02766 * 7 6 5 9 9 C 1.47764 * 119.98038 * 179.97438 * 8 7 6 10 10 N 1.32605 * 119.99183 * 136.29416 * 9 8 7 11 11 C 1.31742 * 121.71515 * 179.72103 * 10 9 8 12 12 C 1.38861 * 121.51068 * 0.55066 * 11 10 9 13 13 C 1.36893 * 119.80321 * 359.43731 * 12 11 10 14 14 C 1.41119 * 118.39498 * 0.27627 * 13 12 11 15 15 C 1.40873 * 120.71626 * 180.02562 * 14 13 12 16 16 H 1.07997 * 119.99936 * 152.77364 * 15 14 13 17 17 C 1.40059 * 119.99999 * 332.77146 * 15 14 13 18 18 N 1.30779 * 120.00153 * 345.67343 * 17 15 14 19 19 Si 1.86794 * 119.99784 * 165.67439 * 17 15 14 20 20 H 1.48497 * 109.47573 * 59.99862 * 19 17 15 21 21 H 1.48496 * 109.47271 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.47267 * 299.99759 * 19 17 15 23 23 C 1.39193 * 120.03001 * 0.22750 * 8 7 6 24 24 C 1.39401 * 119.40751 * 359.49836 * 23 8 7 25 25 H 1.08997 * 109.46970 * 269.97338 * 1 2 3 26 26 H 1.09002 * 109.46724 * 29.97866 * 1 2 3 27 27 H 1.08997 * 109.47065 * 149.97376 * 1 2 3 28 28 H 1.08002 * 119.86502 * 0.02562 * 6 5 4 29 29 H 1.07994 * 119.69947 * 179.97438 * 7 6 5 30 30 H 1.08001 * 119.24782 * 180.28613 * 11 10 9 31 31 H 1.08003 * 120.09992 * 179.71480 * 12 11 10 32 32 H 1.08002 * 120.80028 * 180.30060 * 13 12 11 33 33 H 0.96994 * 120.00360 * 180.02562 * 18 17 15 34 34 H 1.07996 * 120.28888 * 179.74872 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2751 1.0453 0.0000 4 8 3.6300 0.6435 -0.0006 5 6 3.6976 -0.7030 -0.0015 6 6 4.7586 -1.6039 -0.0029 7 6 4.5203 -2.9469 -0.0041 8 6 3.2075 -3.4386 -0.0047 9 6 2.9649 -4.8961 -0.0066 10 7 2.0372 -5.4148 0.7863 11 6 1.7890 -6.7084 0.8080 12 6 2.4959 -7.5966 0.0081 13 6 3.4675 -7.1280 -0.8348 14 6 3.7243 -5.7405 -0.8573 15 6 4.7128 -5.2054 -1.7064 16 1 4.6291 -4.1879 -2.0585 17 6 5.8043 -5.9930 -2.0939 18 7 6.0621 -7.1091 -1.4629 19 14 6.8917 -5.4491 -3.5120 20 1 7.4957 -4.1301 -3.1951 21 1 7.9694 -6.4490 -3.7211 22 1 6.0747 -5.3356 -4.7470 23 6 2.1325 -2.5543 -0.0088 24 6 2.3753 -1.1817 -0.0016 25 1 -0.3633 -0.0005 1.0276 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3633 -0.8897 -0.5142 28 1 5.7748 -1.2380 -0.0029 29 1 5.3504 -3.6377 -0.0056 30 1 1.0211 -7.0875 1.4661 31 1 2.2767 -8.6534 0.0475 32 1 4.0237 -7.8038 -1.4675 33 1 6.8181 -7.6544 -1.7310 34 1 1.1195 -2.9285 -0.0133 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245279458.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:15:18 Heat of formation + Delta-G solvation = 65.707592 kcal Electronic energy + Delta-G solvation = -20593.366946 eV Core-core repulsion = 17457.336335 eV Total energy + Delta-G solvation = -3136.030611 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.69663 -40.44789 -38.37946 -36.01542 -35.62982 -33.09300 -32.49576 -31.49059 -30.05797 -29.46185 -27.49497 -24.74370 -24.05964 -23.18200 -22.13866 -21.35592 -19.27436 -18.56559 -18.01520 -17.31914 -17.02625 -16.87327 -16.23928 -15.75607 -15.33418 -15.05590 -14.54138 -14.30658 -14.25623 -14.21559 -13.95810 -13.54433 -13.35292 -13.23487 -13.17855 -12.96369 -12.73775 -12.38527 -12.20068 -12.02931 -11.75594 -11.63649 -11.20376 -10.31798 -9.95393 -9.88662 -9.82228 -9.04570 -8.68650 -6.42156 -0.31340 0.05343 0.86269 1.05908 1.14941 1.40326 1.48858 1.49293 1.53499 2.16432 2.64283 2.74566 3.10690 3.23530 3.60940 3.65387 3.84990 4.23273 4.33260 4.35186 4.52005 4.54734 4.63186 4.65874 4.68155 4.84090 4.95671 4.99230 5.05699 5.16306 5.21079 5.22526 5.41109 5.62048 5.65437 5.85680 5.96283 6.03093 6.22680 6.49060 6.72783 6.78751 7.69134 8.20740 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.016337 B = 0.006208 C = 0.004782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.449758 B = 4509.403575 C = 5854.378182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.147 3.853 3 N -0.325 5.325 4 O -0.121 6.121 5 C 0.057 3.943 6 C -0.130 4.130 7 C -0.036 4.036 8 C -0.026 4.026 9 C 0.000 4.000 10 N -0.466 5.466 11 C -0.036 4.036 12 C -0.147 4.147 13 C -0.151 4.151 14 C 0.060 3.940 15 C -0.460 4.460 16 H 0.087 0.913 17 C 0.044 3.956 18 N -0.810 5.810 19 Si 0.971 3.029 20 H -0.255 1.255 21 H -0.267 1.267 22 H -0.263 1.263 23 C -0.029 4.029 24 C -0.209 4.209 25 H 0.113 0.887 26 H 0.103 0.897 27 H 0.104 0.896 28 H 0.157 0.843 29 H 0.142 0.858 30 H 0.153 0.847 31 H 0.129 0.871 32 H 0.116 0.884 33 H 0.294 0.706 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.669 5.480 -0.264 7.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.033 4.033 3 N -0.073 5.073 4 O -0.128 6.128 5 C 0.004 3.996 6 C -0.149 4.149 7 C -0.055 4.055 8 C -0.027 4.027 9 C -0.138 4.138 10 N -0.173 5.173 11 C -0.197 4.197 12 C -0.167 4.167 13 C -0.177 4.177 14 C 0.056 3.944 15 C -0.488 4.488 16 H 0.105 0.895 17 C -0.174 4.174 18 N -0.435 5.435 19 Si 0.792 3.208 20 H -0.179 1.179 21 H -0.192 1.192 22 H -0.187 1.187 23 C -0.050 4.050 24 C -0.213 4.213 25 H 0.132 0.868 26 H 0.121 0.879 27 H 0.122 0.878 28 H 0.174 0.826 29 H 0.159 0.841 30 H 0.171 0.829 31 H 0.147 0.853 32 H 0.134 0.866 33 H 0.105 0.895 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.777 7.161 0.296 8.613 hybrid contribution 1.222 -1.638 -1.031 2.289 sum -3.554 5.523 -0.735 6.609 Atomic orbital electron populations 1.20712 0.81268 1.06184 1.06090 1.25241 0.99737 0.88375 0.89913 1.79687 0.85073 1.19351 1.23193 1.89014 1.23262 1.17954 1.82615 1.20549 0.96053 0.84398 0.98601 1.19809 0.97832 0.90197 1.07065 1.21166 0.97305 0.94139 0.92939 1.18358 0.92840 0.91020 1.00521 1.19629 1.01579 0.92384 1.00197 1.67093 1.15535 1.15385 1.19332 1.22233 1.04284 0.88496 1.04707 1.21746 0.96831 1.00515 0.97590 1.21468 0.98709 0.96108 1.01458 1.18639 0.92123 0.92558 0.91105 1.19697 1.04388 1.00285 1.24463 0.89520 1.26675 0.98878 0.93828 0.97972 1.69773 1.26073 1.12202 1.35440 0.85383 0.77618 0.79643 0.78197 1.17913 1.19150 1.18746 1.20794 0.99637 0.89099 0.95466 1.20791 0.91407 0.95095 1.14004 0.86833 0.87883 0.87773 0.82553 0.84056 0.82937 0.85290 0.86598 0.89517 0.84258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.51 10.48 71.24 0.75 -0.76 16 2 C 0.15 4.29 7.47 45.07 0.34 4.63 16 3 N -0.32 -10.86 12.81 -43.43 -0.56 -11.42 16 4 O -0.12 -4.44 12.06 29.92 0.36 -4.08 16 5 C 0.06 2.08 7.48 23.08 0.17 2.25 16 6 C -0.13 -4.50 9.99 22.07 0.22 -4.28 16 7 C -0.04 -1.39 7.74 22.31 0.17 -1.22 16 8 C -0.03 -1.10 5.25 -20.06 -0.11 -1.20 16 9 C 0.00 -0.02 6.42 42.45 0.27 0.26 16 10 N -0.47 -21.24 10.15 -182.95 -1.86 -23.10 16 11 C -0.04 -1.52 11.16 84.86 0.95 -0.58 16 12 C -0.15 -6.21 10.03 22.10 0.22 -5.99 16 13 C -0.15 -7.26 8.73 22.66 0.20 -7.06 16 14 C 0.06 2.97 5.54 -21.02 -0.12 2.85 16 15 C -0.46 -21.84 6.74 23.36 0.16 -21.68 16 16 H 0.09 4.03 6.41 -2.91 -0.02 4.01 16 17 C 0.04 1.98 5.21 85.29 0.44 2.42 16 18 N -0.81 -37.74 10.97 21.85 0.24 -37.50 16 19 Si 0.97 34.48 29.58 68.60 2.03 36.51 16 20 H -0.26 -8.81 7.11 99.48 0.71 -8.10 16 21 H -0.27 -9.04 7.11 99.48 0.71 -8.33 16 22 H -0.26 -9.36 7.11 99.48 0.71 -8.66 16 23 C -0.03 -1.08 9.72 22.78 0.22 -0.86 16 24 C -0.21 -7.25 6.32 -20.22 -0.13 -7.38 16 25 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.16 4.50 8.06 -2.91 -0.02 4.47 16 29 H 0.14 5.77 6.72 -2.91 -0.02 5.75 16 30 H 0.15 5.29 8.06 -2.91 -0.02 5.27 16 31 H 0.13 4.56 8.06 -2.91 -0.02 4.53 16 32 H 0.12 5.69 6.34 -2.91 -0.02 5.68 16 33 H 0.29 12.40 8.29 -92.71 -0.77 11.64 16 34 H 0.14 4.75 8.06 -2.91 -0.02 4.73 16 Total: -1.00 -57.71 299.60 5.12 -52.59 By element: Atomic # 1 Polarization: 24.44 SS G_CDS: 1.14 Total: 25.58 kcal Atomic # 6 Polarization: -42.35 SS G_CDS: 3.76 Total: -38.59 kcal Atomic # 7 Polarization: -69.84 SS G_CDS: -2.17 Total: -72.01 kcal Atomic # 8 Polarization: -4.44 SS G_CDS: 0.36 Total: -4.08 kcal Atomic # 14 Polarization: 34.48 SS G_CDS: 2.03 Total: 36.51 kcal Total: -57.71 5.12 -52.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245279458.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.300 kcal (2) G-P(sol) polarization free energy of solvation -57.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds