Wall clock time and date at job start Tue Mar 31 2020 02:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29729 * 126.30242 * 2 1 4 4 O 1.41332 * 109.78084 * 179.97438 * 3 2 1 5 5 C 1.34834 * 109.38706 * 359.77609 * 4 3 2 6 6 C 1.39190 * 133.21130 * 179.55072 * 5 4 3 7 7 C 1.36422 * 120.25924 * 180.36721 * 6 5 4 8 8 C 1.40118 * 120.60463 * 0.28682 * 7 6 5 9 9 C 1.47932 * 119.97873 * 179.97438 * 8 7 6 10 10 C 1.40286 * 120.34999 * 359.97438 * 9 8 7 11 11 C 1.36656 * 118.60999 * 179.97438 * 10 9 8 12 12 C 1.40893 * 119.25426 * 0.02562 * 11 10 9 13 13 C 1.40969 * 119.67772 * 180.02562 * 12 11 10 14 14 H 1.08003 * 119.99953 * 353.66520 * 13 12 11 15 15 C 1.40079 * 119.99959 * 173.66384 * 13 12 11 16 16 N 1.30721 * 119.99894 * 6.30649 * 15 13 12 17 17 Si 1.86795 * 120.00001 * 186.31023 * 15 13 12 18 18 H 1.48500 * 109.47107 * 94.98557 * 17 15 13 19 19 H 1.48501 * 109.47247 * 214.98242 * 17 15 13 20 20 H 1.48500 * 109.47043 * 334.98356 * 17 15 13 21 21 N 1.33783 * 120.64192 * 359.97438 * 12 11 10 22 22 C 1.31181 * 121.50567 * 359.72694 * 21 12 11 23 23 C 1.39131 * 120.04038 * 359.97068 * 8 7 6 24 24 C 1.39430 * 119.41522 * 359.97438 * 23 8 7 25 25 H 1.08995 * 109.46990 * 270.00352 * 1 2 3 26 26 H 1.09002 * 109.47040 * 30.00425 * 1 2 3 27 27 H 1.08998 * 109.46637 * 150.00288 * 1 2 3 28 28 H 1.08000 * 119.87429 * 0.65547 * 6 5 4 29 29 H 1.07999 * 119.69684 * 180.25331 * 7 6 5 30 30 H 1.08008 * 120.69653 * 359.95672 * 10 9 8 31 31 H 1.08001 * 120.37331 * 179.97438 * 11 10 9 32 32 H 0.97005 * 120.00425 * 180.02562 * 16 15 13 33 33 H 1.08002 * 119.66264 * 180.28902 * 22 21 12 34 34 H 1.08000 * 120.29105 * 179.97438 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2751 1.0455 0.0000 4 8 3.6300 0.6436 0.0006 5 6 3.6974 -0.7031 0.0059 6 6 4.7582 -1.6042 0.0008 7 6 4.5193 -2.9473 0.0012 8 6 3.2070 -3.4384 0.0008 9 6 2.9638 -4.8976 0.0007 10 6 4.0414 -5.7958 0.0005 11 6 3.7759 -7.1364 0.0009 12 6 2.4363 -7.5730 0.0010 13 6 2.1522 -8.9537 0.0020 14 1 2.9540 -9.6701 -0.1005 15 6 0.8301 -9.3967 0.1359 16 7 -0.1515 -8.5334 0.1361 17 14 0.4698 -11.2208 0.3145 18 1 0.3570 -11.5644 1.7548 19 1 -0.8067 -11.5429 -0.3726 20 1 1.5726 -12.0053 -0.2967 21 7 1.4314 -6.6899 0.0011 22 6 1.6546 -5.3972 0.0066 23 6 2.1325 -2.5545 0.0005 24 6 2.3753 -1.1815 0.0012 25 1 -0.3633 0.0001 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3632 -0.8900 -0.5138 28 1 5.7745 -1.2388 0.0012 29 1 5.3492 -3.6384 0.0014 30 1 5.0596 -5.4354 -0.0003 31 1 4.5838 -7.8531 0.0003 32 1 -1.0671 -8.8401 0.2292 33 1 0.8208 -4.7108 0.0113 34 1 1.1194 -2.9286 -0.0003 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245283213.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:15:24 Heat of formation + Delta-G solvation = 86.938403 kcal Electronic energy + Delta-G solvation = -19940.381340 eV Core-core repulsion = 16805.271366 eV Total energy + Delta-G solvation = -3135.109974 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.43806 -38.71034 -37.10556 -34.48497 -33.94003 -31.56623 -31.02252 -30.04759 -28.90990 -28.40369 -25.60909 -23.49995 -22.63994 -21.41824 -20.62573 -20.18687 -17.82553 -17.02530 -16.82349 -15.79746 -15.69167 -15.36743 -14.55564 -14.20292 -13.90620 -13.48702 -13.47214 -13.21356 -13.01150 -12.69269 -12.66818 -12.31286 -12.20549 -11.86334 -11.34263 -11.31685 -11.18163 -10.92992 -10.76311 -10.64628 -10.54226 -10.15401 -9.68775 -8.87523 -8.66261 -8.35832 -7.78924 -7.25410 -6.68975 -4.72515 0.87976 1.36055 2.23938 2.62181 2.74255 2.91925 2.94425 2.97764 3.03308 3.73855 4.02917 4.18326 4.42643 4.58321 4.82606 5.23829 5.31419 5.33677 5.41234 5.49789 5.59057 5.69793 5.71725 5.87803 5.92746 6.12522 6.18431 6.38565 6.45593 6.53324 6.59011 6.82054 6.84454 6.95053 7.16136 7.40039 7.47094 7.58427 7.78983 7.95906 8.36028 8.64997 9.85137 10.01585 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.032253 B = 0.003703 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.935877 B = 7559.720663 C = 8408.362836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.128 3.872 3 N -0.305 5.305 4 O -0.101 6.101 5 C 0.042 3.958 6 C -0.114 4.114 7 C -0.083 4.083 8 C 0.010 3.990 9 C -0.278 4.278 10 C -0.036 4.036 11 C -0.269 4.269 12 C 0.250 3.750 13 C -0.404 4.404 14 H 0.089 0.911 15 C 0.063 3.937 16 N -0.697 5.697 17 Si 0.913 3.087 18 H -0.267 1.267 19 H -0.273 1.273 20 H -0.259 1.259 21 N -0.488 5.488 22 C 0.158 3.842 23 C -0.079 4.079 24 C -0.178 4.178 25 H 0.092 0.908 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.129 0.871 29 H 0.135 0.865 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.278 0.722 33 H 0.122 0.878 34 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.082 7.096 0.102 7.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.052 4.052 3 N -0.050 5.050 4 O -0.113 6.113 5 C -0.011 4.011 6 C -0.134 4.134 7 C -0.102 4.102 8 C 0.008 3.992 9 C -0.284 4.284 10 C -0.059 4.059 11 C -0.292 4.292 12 C 0.128 3.872 13 C -0.433 4.433 14 H 0.107 0.893 15 C -0.165 4.165 16 N -0.317 5.317 17 Si 0.736 3.264 18 H -0.192 1.192 19 H -0.198 1.198 20 H -0.182 1.182 21 N -0.199 5.199 22 C -0.012 4.012 23 C -0.099 4.099 24 C -0.182 4.182 25 H 0.110 0.890 26 H 0.102 0.898 27 H 0.110 0.890 28 H 0.147 0.853 29 H 0.153 0.847 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.090 0.910 33 H 0.140 0.860 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.160 8.037 0.101 8.039 hybrid contribution 0.760 -1.150 0.114 1.383 sum 0.920 6.887 0.215 6.952 Atomic orbital electron populations 1.20431 0.84893 1.04655 1.04333 1.24563 0.97857 0.90075 0.92670 1.79687 0.85730 1.18768 1.20820 1.89032 1.21836 1.17988 1.82436 1.20177 0.95351 0.84268 1.01339 1.19568 0.96535 0.91072 1.06237 1.20943 0.97323 0.93693 0.98262 1.18717 0.91532 0.93191 0.95712 1.18902 0.95260 0.89780 1.24434 1.20633 0.96510 0.93235 0.95531 1.21439 0.97570 0.94908 1.15234 1.18677 0.87005 0.93543 0.88017 1.19835 0.93477 0.91399 1.38599 0.89262 1.26206 0.96179 1.00334 0.93800 1.70114 1.00308 1.35631 1.25618 0.86213 0.79124 0.81554 0.79507 1.19171 1.19795 1.18241 1.68798 1.33361 1.00043 1.17727 1.22750 0.93094 0.93406 0.91926 1.20676 0.99730 0.89235 1.00260 1.20555 0.90791 0.94850 1.11989 0.88966 0.89833 0.88998 0.85259 0.84719 0.88220 0.87996 0.91040 0.86020 0.85019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.83 10.48 36.01 0.38 -0.45 16 2 C 0.13 1.86 7.46 -80.10 -0.60 1.26 16 3 N -0.31 -5.01 12.81 34.92 0.45 -4.57 16 4 O -0.10 -1.77 12.06 7.66 0.09 -1.68 16 5 C 0.04 0.70 7.48 -38.34 -0.29 0.41 16 6 C -0.11 -1.71 10.00 -39.88 -0.40 -2.11 16 7 C -0.08 -1.30 9.36 -39.53 -0.37 -1.67 16 8 C 0.01 0.18 5.88 -104.89 -0.62 -0.44 16 9 C -0.28 -5.73 5.92 -104.45 -0.62 -6.34 16 10 C -0.04 -0.74 9.46 -39.38 -0.37 -1.11 16 11 C -0.27 -6.06 9.76 -39.15 -0.38 -6.45 16 12 C 0.25 6.34 6.54 -84.98 -0.56 5.78 16 13 C -0.40 -9.94 9.11 -37.86 -0.34 -10.29 16 14 H 0.09 2.03 7.86 -52.48 -0.41 1.62 16 15 C 0.06 1.46 5.49 -17.33 -0.10 1.37 16 16 N -0.70 -17.12 11.47 55.55 0.64 -16.49 16 17 Si 0.91 17.01 29.56 -169.99 -5.03 11.98 16 18 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 19 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 20 H -0.26 -4.73 7.11 56.52 0.40 -4.32 16 21 N -0.49 -12.48 7.86 -10.84 -0.09 -12.57 16 22 C 0.16 3.53 10.60 -17.12 -0.18 3.35 16 23 C -0.08 -1.30 9.50 -38.81 -0.37 -1.67 16 24 C -0.18 -2.90 6.32 -105.18 -0.66 -3.56 16 25 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 29 H 0.14 1.86 6.21 -52.49 -0.33 1.53 16 30 H 0.10 1.71 6.27 -52.48 -0.33 1.38 16 31 H 0.10 2.10 8.06 -52.49 -0.42 1.67 16 32 H 0.28 6.12 8.29 -40.82 -0.34 5.79 16 33 H 0.12 2.39 6.20 -52.49 -0.33 2.07 16 34 H 0.13 1.98 6.21 -52.49 -0.33 1.65 16 LS Contribution 300.03 15.07 4.52 4.52 Total: -1.00 -28.49 300.03 -7.86 -36.34 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -2.97 Total: 4.38 kcal Atomic # 6 Polarization: -16.45 SS G_CDS: -5.48 Total: -21.92 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: 1.00 Total: -33.62 kcal Atomic # 8 Polarization: -1.77 SS G_CDS: 0.09 Total: -1.68 kcal Atomic # 14 Polarization: 17.01 SS G_CDS: -5.03 Total: 11.98 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.49 -7.86 -36.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245283213.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.283 kcal (2) G-P(sol) polarization free energy of solvation -28.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds