Wall clock time and date at job start Tue Mar 31 2020 02:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29729 * 126.30242 * 2 1 4 4 O 1.41332 * 109.78084 * 179.97438 * 3 2 1 5 5 C 1.34834 * 109.38706 * 359.77609 * 4 3 2 6 6 C 1.39190 * 133.21130 * 179.55072 * 5 4 3 7 7 C 1.36422 * 120.25924 * 180.36721 * 6 5 4 8 8 C 1.40118 * 120.60463 * 0.28682 * 7 6 5 9 9 C 1.47932 * 119.97873 * 179.97438 * 8 7 6 10 10 C 1.40286 * 120.34999 * 359.97438 * 9 8 7 11 11 C 1.36656 * 118.60999 * 179.97438 * 10 9 8 12 12 C 1.40893 * 119.25426 * 0.02562 * 11 10 9 13 13 C 1.40969 * 119.67772 * 180.02562 * 12 11 10 14 14 H 1.08003 * 119.99953 * 353.66520 * 13 12 11 15 15 C 1.40079 * 119.99959 * 173.66384 * 13 12 11 16 16 N 1.30721 * 119.99894 * 6.30649 * 15 13 12 17 17 Si 1.86795 * 120.00001 * 186.31023 * 15 13 12 18 18 H 1.48500 * 109.47107 * 94.98557 * 17 15 13 19 19 H 1.48501 * 109.47247 * 214.98242 * 17 15 13 20 20 H 1.48500 * 109.47043 * 334.98356 * 17 15 13 21 21 N 1.33783 * 120.64192 * 359.97438 * 12 11 10 22 22 C 1.31181 * 121.50567 * 359.72694 * 21 12 11 23 23 C 1.39131 * 120.04038 * 359.97068 * 8 7 6 24 24 C 1.39430 * 119.41522 * 359.97438 * 23 8 7 25 25 H 1.08995 * 109.46990 * 270.00352 * 1 2 3 26 26 H 1.09002 * 109.47040 * 30.00425 * 1 2 3 27 27 H 1.08998 * 109.46637 * 150.00288 * 1 2 3 28 28 H 1.08000 * 119.87429 * 0.65547 * 6 5 4 29 29 H 1.07999 * 119.69684 * 180.25331 * 7 6 5 30 30 H 1.08008 * 120.69653 * 359.95672 * 10 9 8 31 31 H 1.08001 * 120.37331 * 179.97438 * 11 10 9 32 32 H 0.97005 * 120.00425 * 180.02562 * 16 15 13 33 33 H 1.08002 * 119.66264 * 180.28902 * 22 21 12 34 34 H 1.08000 * 120.29105 * 179.97438 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2751 1.0455 0.0000 4 8 3.6300 0.6436 0.0006 5 6 3.6974 -0.7031 0.0059 6 6 4.7582 -1.6042 0.0008 7 6 4.5193 -2.9473 0.0012 8 6 3.2070 -3.4384 0.0008 9 6 2.9638 -4.8976 0.0007 10 6 4.0414 -5.7958 0.0005 11 6 3.7759 -7.1364 0.0009 12 6 2.4363 -7.5730 0.0010 13 6 2.1522 -8.9537 0.0020 14 1 2.9540 -9.6701 -0.1005 15 6 0.8301 -9.3967 0.1359 16 7 -0.1515 -8.5334 0.1361 17 14 0.4698 -11.2208 0.3145 18 1 0.3570 -11.5644 1.7548 19 1 -0.8067 -11.5429 -0.3726 20 1 1.5726 -12.0053 -0.2967 21 7 1.4314 -6.6899 0.0011 22 6 1.6546 -5.3972 0.0066 23 6 2.1325 -2.5545 0.0005 24 6 2.3753 -1.1815 0.0012 25 1 -0.3633 0.0001 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3632 -0.8900 -0.5138 28 1 5.7745 -1.2388 0.0012 29 1 5.3492 -3.6384 0.0014 30 1 5.0596 -5.4354 -0.0003 31 1 4.5838 -7.8531 0.0003 32 1 -1.0671 -8.8401 0.2292 33 1 0.8208 -4.7108 0.0113 34 1 1.1194 -2.9286 -0.0003 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245283213.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:15:24 Heat of formation + Delta-G solvation = 72.254028 kcal Electronic energy + Delta-G solvation = -19941.018102 eV Core-core repulsion = 16805.271366 eV Total energy + Delta-G solvation = -3135.746736 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.095 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.68996 -40.32727 -38.51721 -35.64459 -35.60324 -33.13234 -32.61853 -31.41283 -30.22465 -29.56501 -27.23021 -24.90286 -24.13535 -22.95122 -22.15122 -21.36454 -19.50323 -18.32652 -18.17716 -17.30840 -17.04355 -16.79743 -16.08830 -15.67649 -15.33474 -14.78198 -14.50425 -14.36543 -14.32133 -14.30275 -13.82737 -13.72711 -13.52624 -13.30898 -12.83404 -12.75336 -12.68001 -12.41190 -12.13195 -11.95503 -11.76834 -11.74367 -11.30218 -10.44682 -10.04086 -9.91714 -9.52226 -8.82136 -8.37733 -6.49538 -0.34494 -0.04580 0.99853 1.07742 1.25367 1.42016 1.51330 1.55648 1.56388 2.20341 2.60272 2.96034 3.10005 3.24885 3.61042 3.93971 3.95301 4.07831 4.17670 4.27802 4.36529 4.47065 4.57795 4.63604 4.70171 4.84704 4.90717 4.96710 5.05802 5.12882 5.18890 5.24570 5.36043 5.49246 5.60487 5.80664 5.94913 6.09136 6.22689 6.24416 6.65009 6.89763 8.13169 8.35643 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.032253 B = 0.003703 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.935877 B = 7559.720663 C = 8408.362836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.140 3.860 3 N -0.326 5.326 4 O -0.121 6.121 5 C 0.035 3.965 6 C -0.111 4.111 7 C -0.073 4.073 8 C -0.018 4.018 9 C -0.263 4.263 10 C -0.038 4.038 11 C -0.286 4.286 12 C 0.219 3.781 13 C -0.448 4.448 14 H 0.095 0.905 15 C 0.022 3.978 16 N -0.742 5.742 17 Si 0.989 3.011 18 H -0.264 1.264 19 H -0.267 1.267 20 H -0.253 1.253 21 N -0.522 5.522 22 C 0.133 3.867 23 C -0.069 4.069 24 C -0.195 4.195 25 H 0.112 0.888 26 H 0.100 0.900 27 H 0.105 0.895 28 H 0.161 0.839 29 H 0.157 0.843 30 H 0.137 0.863 31 H 0.114 0.886 32 H 0.283 0.717 33 H 0.139 0.861 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.657 8.027 0.191 8.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.040 4.040 3 N -0.073 5.073 4 O -0.130 6.130 5 C -0.018 4.018 6 C -0.131 4.131 7 C -0.092 4.092 8 C -0.019 4.019 9 C -0.268 4.268 10 C -0.061 4.061 11 C -0.308 4.308 12 C 0.095 3.905 13 C -0.478 4.478 14 H 0.113 0.887 15 C -0.201 4.201 16 N -0.363 5.363 17 Si 0.808 3.192 18 H -0.189 1.189 19 H -0.192 1.192 20 H -0.176 1.176 21 N -0.235 5.235 22 C -0.035 4.035 23 C -0.089 4.089 24 C -0.199 4.199 25 H 0.130 0.870 26 H 0.119 0.881 27 H 0.123 0.877 28 H 0.178 0.822 29 H 0.175 0.825 30 H 0.155 0.845 31 H 0.132 0.868 32 H 0.094 0.906 33 H 0.157 0.843 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.765 9.009 0.186 9.043 hybrid contribution 0.663 -1.069 0.080 1.261 sum 1.429 7.939 0.265 8.071 Atomic orbital electron populations 1.20705 0.81586 1.06175 1.05985 1.25247 0.99676 0.88734 0.90323 1.79702 0.85331 1.19510 1.22776 1.89011 1.22940 1.18276 1.82796 1.20632 0.96245 0.84410 1.00523 1.19898 0.97721 0.90436 1.05000 1.21163 0.96956 0.94401 0.96713 1.18701 0.93110 0.91766 0.98313 1.19160 0.94607 0.91480 1.21535 1.21030 0.98358 0.92415 0.94274 1.21634 0.96965 0.96349 1.15867 1.19117 0.88255 0.94208 0.88879 1.20142 0.94621 0.91707 1.41291 0.88737 1.27066 0.95472 1.04845 0.92728 1.70197 1.00801 1.37821 1.27497 0.85091 0.79004 0.75677 0.79389 1.18859 1.19174 1.17629 1.68733 1.34427 1.01330 1.18997 1.23136 0.94778 0.92983 0.92557 1.20801 1.00111 0.89303 0.98650 1.20791 0.91389 0.95142 1.12572 0.87021 0.88127 0.87673 0.82152 0.82511 0.84490 0.86751 0.90603 0.84340 0.83988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.44 10.48 71.24 0.75 -0.69 16 2 C 0.14 3.75 7.46 45.06 0.34 4.09 16 3 N -0.33 -10.15 12.81 -43.44 -0.56 -10.70 16 4 O -0.12 -4.05 12.06 29.79 0.36 -3.70 16 5 C 0.03 1.09 7.48 23.08 0.17 1.26 16 6 C -0.11 -2.97 10.00 22.07 0.22 -2.75 16 7 C -0.07 -2.06 9.36 22.30 0.21 -1.85 16 8 C -0.02 -0.59 5.88 -20.04 -0.12 -0.71 16 9 C -0.26 -10.53 5.92 -19.75 -0.12 -10.65 16 10 C -0.04 -1.49 9.46 22.40 0.21 -1.28 16 11 C -0.29 -12.96 9.76 22.55 0.22 -12.74 16 12 C 0.22 11.44 6.54 40.17 0.26 11.70 16 13 C -0.45 -22.86 9.11 23.39 0.21 -22.65 16 14 H 0.09 4.46 7.86 -2.91 -0.02 4.43 16 15 C 0.02 1.07 5.49 85.31 0.47 1.54 16 16 N -0.74 -37.85 11.47 21.85 0.25 -37.60 16 17 Si 0.99 35.56 29.56 68.60 2.03 37.59 16 18 H -0.26 -9.24 7.11 99.48 0.71 -8.54 16 19 H -0.27 -9.21 7.11 99.48 0.71 -8.50 16 20 H -0.25 -8.71 7.11 99.48 0.71 -8.00 16 21 N -0.52 -27.59 7.86 -188.20 -1.48 -29.07 16 22 C 0.13 5.98 10.60 85.25 0.90 6.88 16 23 C -0.07 -2.14 9.50 22.77 0.22 -1.92 16 24 C -0.20 -5.95 6.32 -20.22 -0.13 -6.08 16 25 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.16 3.26 8.06 -2.91 -0.02 3.23 16 29 H 0.16 3.67 6.21 -2.91 -0.02 3.65 16 30 H 0.14 4.26 6.27 -2.91 -0.02 4.25 16 31 H 0.11 4.72 8.06 -2.91 -0.02 4.69 16 32 H 0.28 12.93 8.29 -92.70 -0.77 12.16 16 33 H 0.14 5.48 6.20 -2.91 -0.02 5.46 16 34 H 0.14 4.02 6.21 -2.91 -0.02 4.01 16 Total: -1.00 -63.79 300.03 5.57 -58.21 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: 1.15 Total: 21.12 kcal Atomic # 6 Polarization: -39.67 SS G_CDS: 3.82 Total: -35.85 kcal Atomic # 7 Polarization: -75.59 SS G_CDS: -1.79 Total: -77.38 kcal Atomic # 8 Polarization: -4.05 SS G_CDS: 0.36 Total: -3.70 kcal Atomic # 14 Polarization: 35.56 SS G_CDS: 2.03 Total: 37.59 kcal Total: -63.79 5.57 -58.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245283213.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.468 kcal (2) G-P(sol) polarization free energy of solvation -63.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds