Wall clock time and date at job start Tue Mar 31 2020 01:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86810 * 119.99683 * 2 1 4 4 H 1.48502 * 109.46811 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.46980 * 300.00142 * 3 2 1 6 6 H 1.48492 * 109.46883 * 60.00138 * 3 2 1 7 7 C 1.38811 * 120.00518 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00173 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99930 * 359.97438 * 7 2 1 10 10 C 1.47584 * 134.49072 * 0.02562 * 9 7 2 11 11 C 1.53948 * 86.11476 * 204.63248 * 10 9 7 12 12 C 1.47582 * 134.49436 * 179.97438 * 9 7 2 13 13 H 1.09002 * 113.87072 * 269.68023 * 12 9 7 14 14 C 1.52997 * 113.76765 * 41.06574 * 12 9 7 15 15 N 1.46497 * 109.46983 * 281.49507 * 14 12 9 16 16 C 1.34780 * 119.99566 * 180.02562 * 15 14 12 17 17 O 1.21280 * 120.00423 * 359.97438 * 16 15 14 18 18 C 1.50701 * 119.99795 * 180.02562 * 16 15 14 19 19 C 1.50703 * 109.47064 * 179.97438 * 18 16 15 20 20 C 1.33384 * 125.20461 * 89.71985 * 19 18 16 21 21 C 1.38429 * 114.92399 * 179.86134 * 20 19 18 22 22 C 1.33387 * 114.91542 * 0.42576 * 21 20 19 23 23 S 1.75882 * 125.20183 * 270.02481 * 19 18 16 24 24 H 0.97001 * 120.00604 * 359.97438 * 1 2 3 25 25 H 1.09001 * 113.77381 * 90.32643 * 10 9 7 26 26 H 1.09005 * 113.76636 * 318.92844 * 10 9 7 27 27 H 1.09001 * 113.73641 * 222.04852 * 11 10 9 28 28 H 1.09001 * 113.84041 * 90.75248 * 11 10 9 29 29 H 1.09001 * 109.46832 * 161.49324 * 14 12 9 30 30 H 1.09002 * 109.47153 * 41.49515 * 14 12 9 31 31 H 0.96995 * 120.00423 * 359.97438 * 15 14 12 32 32 H 1.09002 * 109.47060 * 299.99722 * 18 16 15 33 33 H 1.09001 * 109.47380 * 59.99809 * 18 16 15 34 34 H 1.07996 * 122.53922 * 0.02562 * 20 19 18 35 35 H 1.07991 * 122.54231 * 180.19819 * 21 20 19 36 36 H 1.08002 * 125.20018 * 179.75340 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1032 -2.7574 -0.0005 11 6 0.3473 -4.0831 0.6396 12 6 1.7204 -3.8101 -0.0015 13 1 1.8322 -4.2362 -0.9985 14 6 2.9032 -4.1224 0.9173 15 7 4.1500 -3.7188 0.2625 16 6 5.3294 -3.9000 0.8890 17 8 5.3586 -4.3967 1.9950 18 6 6.6120 -3.4843 0.2157 19 6 7.7771 -3.7920 1.1207 20 6 8.4543 -4.9410 1.1387 21 6 9.4905 -4.9932 2.0551 22 6 9.6490 -3.8896 2.7874 23 16 8.4471 -2.6937 2.3199 24 1 -0.4851 0.8400 0.0004 25 1 -0.5272 -2.8729 -0.9980 26 1 -0.7167 -2.1392 0.6549 27 1 -0.1589 -4.9598 0.2355 28 1 0.3598 -4.0642 1.7294 29 1 2.9307 -5.1924 1.1231 30 1 2.7907 -3.5751 1.8532 31 1 4.1267 -3.3218 -0.6222 32 1 6.7245 -4.0308 -0.7206 33 1 6.5844 -2.4141 0.0106 34 1 8.2141 -5.7671 0.4858 35 1 10.1202 -5.8627 2.1710 36 1 10.4003 -3.7518 3.5510 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323177213.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:42 Heat of formation + Delta-G solvation = 28.550509 kcal Electronic energy + Delta-G solvation = -19150.962826 eV Core-core repulsion = 16148.764915 eV Total energy + Delta-G solvation = -3002.197912 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.85291 -39.61554 -38.48591 -35.46820 -34.19578 -33.19462 -29.94705 -29.51690 -27.63282 -25.28212 -24.46610 -23.47709 -21.62754 -20.82297 -20.12689 -18.83261 -18.19233 -17.80736 -17.11024 -16.88390 -16.44556 -16.07443 -15.74421 -15.42440 -14.91325 -14.55868 -14.08214 -13.74477 -13.55560 -13.46534 -13.26265 -13.22885 -12.96773 -12.68187 -12.57640 -12.43131 -12.26756 -11.83369 -11.63573 -11.50397 -11.36692 -10.88121 -10.81314 -9.99097 -9.56696 -9.38287 -8.86889 -7.85582 -5.16978 0.08027 0.74327 1.13221 1.44074 1.45688 1.53866 1.66498 1.83894 2.36038 2.49643 3.34917 3.40611 3.64836 3.93226 4.05956 4.19146 4.21047 4.26947 4.37325 4.50253 4.65261 4.71418 4.73421 4.76812 4.89822 5.06923 5.12297 5.21772 5.35517 5.38537 5.48788 5.61999 5.63090 5.76599 5.99638 6.60266 6.97004 7.28114 7.67232 8.61885 9.31588 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.019357 B = 0.004511 C = 0.003805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.184473 B = 6205.431445 C = 7356.680061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.072 4.072 3 Si 0.964 3.036 4 H -0.264 1.264 5 H -0.294 1.294 6 H -0.301 1.301 7 C -0.210 4.210 8 H 0.087 0.913 9 N -0.630 5.630 10 C 0.149 3.851 11 C -0.132 4.132 12 C 0.134 3.866 13 H 0.074 0.926 14 C 0.134 3.866 15 N -0.712 5.712 16 C 0.509 3.491 17 O -0.580 6.580 18 C -0.067 4.067 19 C -0.171 4.171 20 C -0.135 4.135 21 C -0.141 4.141 22 C -0.214 4.214 23 S 0.063 5.937 24 H 0.244 0.756 25 H 0.023 0.977 26 H 0.037 0.963 27 H 0.094 0.906 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.037 0.963 31 H 0.410 0.590 32 H 0.145 0.855 33 H 0.113 0.887 34 H 0.154 0.846 35 H 0.165 0.835 36 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.263 -11.239 -0.723 19.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.264 4.264 3 Si 0.794 3.206 4 H -0.188 1.188 5 H -0.221 1.221 6 H -0.229 1.229 7 C -0.339 4.339 8 H 0.105 0.895 9 N -0.356 5.356 10 C 0.024 3.976 11 C -0.171 4.171 12 C 0.028 3.972 13 H 0.092 0.908 14 C 0.009 3.991 15 N -0.363 5.363 16 C 0.295 3.705 17 O -0.460 6.460 18 C -0.109 4.109 19 C -0.288 4.288 20 C -0.165 4.165 21 C -0.171 4.171 22 C -0.349 4.349 23 S 0.326 5.674 24 H 0.053 0.947 25 H 0.041 0.959 26 H 0.055 0.945 27 H 0.112 0.888 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.056 0.944 31 H 0.246 0.754 32 H 0.163 0.837 33 H 0.131 0.869 34 H 0.171 0.829 35 H 0.182 0.818 36 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 16.001 -9.791 0.542 18.767 hybrid contribution 0.186 0.206 -0.728 0.779 sum 16.188 -9.585 -0.186 18.814 Atomic orbital electron populations 1.70003 1.06308 1.25031 1.59168 1.25499 0.96381 1.00472 1.04054 0.85205 0.78489 0.80512 0.76393 1.18796 1.22088 1.22853 1.19358 0.90767 0.83012 1.40761 0.89511 1.46431 1.03237 1.00032 1.85911 1.22168 0.87192 0.91791 0.96447 1.23574 0.95336 0.97830 1.00337 1.22680 0.93154 0.84525 0.96871 0.90823 1.21496 0.82819 0.99202 0.95614 1.45928 1.05638 1.63047 1.21653 1.20993 0.85824 0.77905 0.85729 1.90677 1.87917 1.45924 1.21442 1.20226 0.86853 1.05106 0.98682 1.23982 1.02635 0.98961 1.03241 1.20390 0.96876 0.97529 1.01707 1.20450 0.99801 0.99878 0.96942 1.25906 1.04537 0.97408 1.07066 1.84486 1.28388 1.19793 1.34732 0.94675 0.95901 0.94477 0.88771 0.90620 0.90337 0.94450 0.75409 0.83703 0.86930 0.82854 0.81777 0.79714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.26 11.38 21.65 0.25 -57.02 16 2 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 3 Si 0.96 45.45 29.55 68.60 2.03 47.48 16 4 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 6 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 7 C -0.21 -11.10 10.51 84.03 0.88 -10.21 16 8 H 0.09 4.31 7.80 -2.91 -0.02 4.29 16 9 N -0.63 -29.93 3.57 -694.06 -2.48 -32.42 16 10 C 0.15 6.80 7.51 86.48 0.65 7.45 16 11 C -0.13 -4.51 7.86 31.26 0.25 -4.26 16 12 C 0.13 4.75 4.33 45.10 0.20 4.94 16 13 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 14 C 0.13 4.55 5.54 86.38 0.48 5.03 16 15 N -0.71 -21.77 5.53 -463.06 -2.56 -24.33 16 16 C 0.51 15.79 7.82 87.66 0.69 16.47 16 17 O -0.58 -22.67 16.03 -3.03 -0.05 -22.72 16 18 C -0.07 -1.53 6.19 29.10 0.18 -1.35 16 19 C -0.17 -4.24 5.00 24.59 0.12 -4.11 16 20 C -0.13 -2.94 10.05 21.22 0.21 -2.72 16 21 C -0.14 -2.73 10.18 21.22 0.22 -2.51 16 22 C -0.21 -4.32 11.23 66.72 0.75 -3.57 16 23 S 0.06 1.58 23.33 -56.49 -1.32 0.26 16 24 H 0.24 14.38 8.31 -92.71 -0.77 13.61 16 25 H 0.02 1.05 8.14 -2.39 -0.02 1.04 16 26 H 0.04 1.94 7.15 -2.38 -0.02 1.93 16 27 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 28 H 0.08 2.61 8.10 -2.39 -0.02 2.59 16 29 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.41 11.29 8.47 -92.71 -0.79 10.50 16 32 H 0.15 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 35 H 0.16 2.21 8.06 -2.91 -0.02 2.18 16 36 H 0.19 2.66 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -71.42 323.46 1.25 -70.17 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: 0.30 Total: 16.97 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: 5.09 Total: 1.61 kcal Atomic # 7 Polarization: -108.97 SS G_CDS: -4.79 Total: -113.76 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: -0.05 Total: -22.72 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -1.32 Total: 0.26 kcal Total: -71.42 1.25 -70.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323177213.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.721 kcal (2) G-P(sol) polarization free energy of solvation -71.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds