Wall clock time and date at job start Tue Mar 31 2020 01:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34818 * 117.00228 * 2 1 4 4 O 1.21572 * 120.00077 * 0.02562 * 3 2 1 5 5 C 1.46919 * 119.99981 * 179.97438 * 3 2 1 6 6 C 1.39421 * 120.59181 * 179.97438 * 5 3 2 7 7 C 1.39441 * 118.94962 * 180.02562 * 6 5 3 8 8 C 1.35785 * 120.13878 * 359.73637 * 7 6 5 9 9 N 1.35423 * 121.24138 * 0.54557 * 8 7 6 10 10 C 1.46507 * 119.46106 * 179.71640 * 9 8 7 11 11 C 1.50697 * 109.47005 * 269.73053 * 10 9 8 12 12 O 1.21291 * 120.00763 * 359.73081 * 11 10 9 13 13 N 1.34784 * 119.99774 * 180.02562 * 11 10 9 14 14 C 1.37092 * 119.99968 * 179.72830 * 13 11 10 15 15 H 1.08005 * 120.00127 * 359.97438 * 14 13 11 16 16 C 1.38955 * 120.00107 * 179.97438 * 14 13 11 17 17 N 1.31413 * 119.99828 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00407 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46940 * 60.00199 * 18 16 14 20 20 H 1.48496 * 109.47341 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47121 * 300.00728 * 18 16 14 22 22 C 1.34655 * 121.06765 * 359.45039 * 9 8 7 23 23 O 1.21878 * 120.10386 * 180.24742 * 22 9 8 24 24 H 1.08999 * 109.47392 * 59.98994 * 1 2 3 25 25 H 1.09000 * 109.47423 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47059 * 299.99401 * 1 2 3 27 27 H 1.08001 * 120.52682 * 0.05356 * 6 5 3 28 28 H 1.07997 * 119.92930 * 179.97438 * 7 6 5 29 29 H 1.07996 * 119.38169 * 180.26980 * 8 7 6 30 30 H 1.09001 * 109.46566 * 149.73849 * 10 9 8 31 31 H 1.08993 * 109.47390 * 29.73638 * 10 9 8 32 32 H 0.97005 * 119.99846 * 359.72750 * 13 11 10 33 33 H 0.96990 * 120.00373 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0641 1.2012 0.0000 4 8 1.4020 2.2208 0.0005 5 6 3.5313 1.2780 0.0006 6 6 4.1771 2.5137 0.0000 7 6 5.5711 2.5466 0.0001 8 6 6.2805 1.3888 0.0060 9 7 5.6601 0.1850 0.0010 10 6 6.4640 -1.0398 0.0014 11 6 6.7395 -1.4603 -1.4193 12 8 6.3029 -0.8045 -2.3415 13 7 7.4661 -2.5686 -1.6652 14 6 7.7120 -2.9542 -2.9576 15 1 7.3232 -2.3702 -3.7787 16 6 8.4616 -4.0964 -3.2111 17 7 8.9343 -4.8073 -2.2120 18 14 8.7961 -4.6224 -4.9720 19 1 9.5342 -3.5449 -5.6786 20 1 9.6115 -5.8634 -4.9715 21 1 7.5081 -4.8771 -5.6657 22 6 4.3166 0.0957 0.0009 23 8 3.7766 -0.9970 0.0009 24 1 -0.3634 0.5140 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 3.6067 3.4308 0.0001 28 1 6.0877 3.4951 -0.0008 29 1 7.3597 1.4286 0.0104 30 1 5.9192 -1.8317 0.5154 31 1 7.4073 -0.8552 0.5151 32 1 7.8150 -3.0933 -0.9277 33 1 9.4578 -5.6044 -2.3889 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001626566750.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:04 Heat of formation + Delta-G solvation = -139.414968 kcal Electronic energy + Delta-G solvation = -21453.785714 eV Core-core repulsion = 17865.718308 eV Total energy + Delta-G solvation = -3588.067407 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.094 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.62259 -41.12431 -39.90584 -38.15823 -37.40200 -36.16099 -35.36414 -33.38216 -31.41967 -29.76099 -28.73544 -26.75995 -25.84952 -23.94349 -22.50658 -21.36958 -20.10724 -19.47527 -18.57919 -18.26785 -17.76266 -17.59495 -17.37293 -16.86806 -16.59126 -16.03213 -15.80392 -15.64927 -15.38270 -14.72175 -14.49163 -14.19533 -13.59723 -13.49506 -13.46188 -13.18613 -13.02355 -12.99475 -12.85141 -12.49223 -12.14913 -11.77435 -11.76481 -11.57926 -11.48628 -11.07497 -10.46836 -10.10129 -9.11755 -8.52252 -6.01826 -0.66986 0.86351 1.29561 1.36117 1.41047 1.43970 1.52220 1.89640 1.90820 2.26938 2.61704 3.10765 3.15307 3.51037 3.70422 3.89493 3.95448 4.08074 4.20135 4.24571 4.25784 4.29074 4.33804 4.61225 4.76934 4.91519 5.12511 5.35269 5.36254 5.49170 5.89926 5.92899 6.48370 6.72681 6.89582 7.04306 7.42644 7.96677 8.63951 Molecular weight = 280.09amu Principal moments of inertia in cm(-1) A = 0.024368 B = 0.004223 C = 0.003886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.769075 B = 6628.114906 C = 7202.874655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.355 6.355 3 C 0.527 3.473 4 O -0.543 6.543 5 C -0.326 4.326 6 C 0.098 3.902 7 C -0.245 4.245 8 C 0.199 3.801 9 N -0.473 5.473 10 C 0.085 3.915 11 C 0.422 3.578 12 O -0.629 6.629 13 N -0.557 5.557 14 C -0.338 4.338 15 H 0.078 0.922 16 C -0.005 4.005 17 N -0.912 5.912 18 Si 0.991 3.009 19 H -0.267 1.267 20 H -0.268 1.268 21 H -0.278 1.278 22 C 0.521 3.479 23 O -0.568 6.568 24 H 0.063 0.937 25 H 0.120 0.880 26 H 0.071 0.929 27 H 0.170 0.830 28 H 0.208 0.792 29 H 0.215 0.785 30 H 0.117 0.883 31 H 0.171 0.829 32 H 0.401 0.599 33 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.738 12.884 9.238 16.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.271 6.271 3 C 0.376 3.624 4 O -0.437 6.437 5 C -0.332 4.332 6 C 0.075 3.925 7 C -0.266 4.266 8 C 0.068 3.932 9 N -0.178 5.178 10 C -0.040 4.040 11 C 0.209 3.791 12 O -0.517 6.517 13 N -0.193 5.193 14 C -0.467 4.467 15 H 0.096 0.904 16 C -0.206 4.206 17 N -0.552 5.552 18 Si 0.815 3.185 19 H -0.192 1.192 20 H -0.192 1.192 21 H -0.204 1.204 22 C 0.323 3.677 23 O -0.450 6.450 24 H 0.081 0.919 25 H 0.138 0.862 26 H 0.089 0.911 27 H 0.187 0.813 28 H 0.225 0.775 29 H 0.232 0.768 30 H 0.135 0.865 31 H 0.189 0.811 32 H 0.236 0.764 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.471 12.586 8.649 15.661 hybrid contribution -0.174 -0.953 -0.657 1.170 sum -3.645 11.633 7.992 14.577 Atomic orbital electron populations 1.23527 0.75173 1.05177 1.02704 1.86853 1.24584 1.32116 1.83503 1.20561 0.88731 0.81333 0.71758 1.90764 1.66946 1.36099 1.49908 1.20004 0.90274 0.94846 1.28058 1.22397 0.95764 0.96169 0.78156 1.21188 0.92244 0.99724 1.13463 1.23336 1.02186 0.83010 0.84661 1.45216 1.07562 1.08571 1.56444 1.21875 0.99069 0.87928 0.95147 1.20800 0.83196 0.83505 0.91604 1.90549 1.56618 1.57028 1.47467 1.41793 1.46269 1.22720 1.08547 1.19593 1.32657 1.09671 0.84780 0.90435 1.26007 0.95672 0.95363 1.03568 1.69638 1.35353 1.17359 1.32883 0.85018 0.78301 0.78066 0.77159 1.19200 1.19231 1.20361 1.17212 0.81636 0.90452 0.78370 1.90919 1.70826 1.30084 1.53217 0.91873 0.86203 0.91073 0.81252 0.77527 0.76813 0.86538 0.81134 0.76439 0.90994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 10.57 113.37 1.20 1.92 16 2 O -0.36 -13.30 8.76 -50.41 -0.44 -13.75 16 3 C 0.53 19.17 7.88 70.10 0.55 19.72 16 4 O -0.54 -19.45 16.18 19.60 0.32 -19.13 16 5 C -0.33 -10.88 5.92 -19.80 -0.12 -10.99 16 6 C 0.10 2.17 9.70 22.85 0.22 2.39 16 7 C -0.24 -3.73 9.99 21.99 0.22 -3.51 16 8 C 0.20 3.75 10.25 83.57 0.86 4.61 16 9 N -0.47 -14.24 2.06 -653.72 -1.35 -15.58 16 10 C 0.08 2.60 5.80 85.63 0.50 3.10 16 11 C 0.42 18.99 7.85 87.65 0.69 19.68 16 12 O -0.63 -33.91 16.01 -3.06 -0.05 -33.96 16 13 N -0.56 -27.14 5.29 -306.97 -1.62 -28.76 16 14 C -0.34 -18.60 9.68 84.04 0.81 -17.79 16 15 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 16 C 0.00 -0.26 5.50 84.93 0.47 0.21 16 17 N -0.91 -47.31 13.05 21.66 0.28 -47.03 16 18 Si 0.99 41.83 29.55 68.60 2.03 43.86 16 19 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 20 H -0.27 -10.59 7.11 99.48 0.71 -9.89 16 21 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 22 C 0.52 19.87 7.44 85.18 0.63 20.50 16 23 O -0.57 -26.67 14.76 15.60 0.23 -26.44 16 24 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.12 2.52 8.14 -2.39 -0.02 2.51 16 26 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.17 2.94 7.69 -2.91 -0.02 2.92 16 28 H 0.21 1.06 8.06 -2.91 -0.02 1.04 16 29 H 0.22 1.96 8.01 -2.91 -0.02 1.94 16 30 H 0.12 3.75 7.38 -2.39 -0.02 3.73 16 31 H 0.17 3.15 7.99 -2.39 -0.02 3.13 16 32 H 0.40 18.14 7.90 -92.70 -0.73 17.41 16 33 H 0.28 13.65 8.31 -92.72 -0.77 12.87 16 Total: -1.00 -84.88 304.46 5.86 -79.02 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: 0.43 Total: 21.93 kcal Atomic # 6 Polarization: 33.81 SS G_CDS: 6.03 Total: 39.84 kcal Atomic # 7 Polarization: -88.68 SS G_CDS: -2.69 Total: -91.37 kcal Atomic # 8 Polarization: -93.33 SS G_CDS: 0.06 Total: -93.27 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -84.88 5.86 -79.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626566750.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.393 kcal (2) G-P(sol) polarization free energy of solvation -84.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds