Wall clock time and date at job start Tue Mar 31 2020 01:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86802 * 120.00175 * 2 1 4 4 H 1.48501 * 109.46927 * 240.00429 * 3 2 1 5 5 H 1.48499 * 109.46983 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47629 * 120.00275 * 3 2 1 7 7 C 1.37879 * 120.00128 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00233 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99633 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.46874 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99891 * 179.97438 * 10 9 7 12 12 O 1.21596 * 120.00004 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99841 * 179.97438 * 11 10 9 14 14 C 1.40201 * 119.99701 * 175.39736 * 13 11 10 15 15 C 1.38851 * 119.99664 * 35.90691 * 14 13 11 16 16 C 1.38052 * 120.00803 * 180.02562 * 15 14 13 17 17 C 1.38902 * 119.98927 * 0.24996 * 16 15 14 18 18 N 1.39925 * 120.00204 * 179.72313 * 17 16 15 19 19 C 1.38861 * 119.99302 * 359.47490 * 17 16 15 20 20 N 1.48017 * 120.00246 * 180.24697 * 19 17 16 21 21 O 1.21800 * 120.00435 * 322.93292 * 20 19 17 22 22 O 1.21809 * 119.99942 * 142.92930 * 20 19 17 23 23 C 1.38088 * 119.99240 * 0.52998 * 19 17 16 24 24 H 0.97007 * 119.99882 * 359.97438 * 1 2 3 25 25 H 1.08993 * 109.47330 * 60.00729 * 9 7 2 26 26 H 1.08997 * 109.47203 * 300.00086 * 9 7 2 27 27 H 0.97002 * 120.00396 * 0.02562 * 10 9 7 28 28 H 0.96999 * 120.00184 * 355.39806 * 13 11 10 29 29 H 1.07999 * 120.00187 * 359.97438 * 15 14 13 30 30 H 1.07993 * 120.00798 * 179.97438 * 16 15 14 31 31 H 0.96997 * 119.99797 * 353.29919 * 18 17 16 32 32 H 0.97001 * 119.99911 * 173.29381 * 18 17 16 33 33 H 1.07997 * 120.00233 * 179.76907 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2841 2.7464 -0.0006 6 1 3.1030 1.6965 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 1.7537 -4.8833 0.0000 12 8 0.5582 -5.1055 0.0000 13 7 2.6295 -5.9078 -0.0005 14 6 2.1652 -7.2270 0.0974 15 6 0.9746 -7.5914 -0.5173 16 6 0.5169 -8.8902 -0.4205 17 6 1.2449 -9.8313 0.2963 18 7 0.7783 -11.1464 0.3994 19 6 2.4384 -9.4681 0.9061 20 7 3.2171 -10.4721 1.6654 21 8 2.6407 -11.3151 2.3293 22 8 4.4344 -10.4555 1.6262 23 6 2.8957 -8.1688 0.8091 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6246 -2.5570 0.8896 27 1 3.1566 -3.4355 -0.0002 28 1 3.5811 -5.7323 -0.0687 29 1 0.4061 -6.8584 -1.0705 30 1 -0.4092 -9.1735 -0.8982 31 1 -0.0982 -11.3784 0.0548 32 1 1.3314 -11.8261 0.8154 33 1 3.8220 -7.8853 1.2865 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673495455.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:18 Heat of formation + Delta-G solvation = -27.578049 kcal Electronic energy + Delta-G solvation = -20728.217346 eV Core-core repulsion = 17177.292303 eV Total energy + Delta-G solvation = -3550.925043 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.100 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.30740 -41.68406 -40.10918 -37.77224 -36.87937 -36.05606 -34.70012 -34.04495 -32.89619 -30.03357 -28.71152 -27.24339 -24.98081 -24.10757 -23.32850 -22.04458 -20.34004 -20.08577 -19.71590 -18.81970 -18.38733 -18.17625 -17.75130 -17.43112 -16.65336 -16.49381 -15.89029 -15.51892 -15.19490 -15.01219 -14.61684 -14.22856 -14.03105 -13.92237 -13.19322 -12.90889 -12.75579 -12.70012 -12.53186 -12.29536 -12.23234 -12.10915 -11.49603 -11.27576 -10.88253 -10.78767 -10.47580 -9.85973 -8.64634 -8.28011 -6.43849 -1.01739 0.05350 0.18929 0.35616 1.44827 1.48509 1.55838 1.65423 1.99600 2.39152 2.45060 2.49831 3.07655 3.32402 3.33526 3.82109 3.85543 3.97880 4.37020 4.41372 4.76556 4.99435 5.03958 5.14867 5.28026 5.29176 5.46080 5.60374 5.63927 5.83713 6.01546 6.12098 6.50608 6.57822 6.66818 7.13861 7.26070 7.56336 8.83665 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.039469 B = 0.003052 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.254172 B = 9171.585831 C = 9687.055650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.007 3.993 3 Si 0.982 3.018 4 H -0.262 1.262 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.557 4.557 8 H 0.084 0.916 9 C 0.285 3.715 10 N -0.714 5.714 11 C 0.694 3.306 12 O -0.623 6.623 13 N -0.670 5.670 14 C 0.116 3.884 15 C -0.032 4.032 16 C -0.165 4.165 17 C 0.270 3.730 18 N -0.844 5.844 19 C -0.120 4.120 20 N 0.046 4.954 21 O -0.185 6.185 22 O -0.180 6.180 23 C -0.048 4.048 24 H 0.269 0.731 25 H -0.006 1.006 26 H -0.010 1.010 27 H 0.408 0.592 28 H 0.425 0.575 29 H 0.142 0.858 30 H 0.178 0.822 31 H 0.423 0.577 32 H 0.408 0.592 33 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.554 -19.414 -1.710 20.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.193 4.193 3 Si 0.805 3.195 4 H -0.187 1.187 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.595 4.595 8 H 0.102 0.898 9 C 0.162 3.838 10 N -0.367 5.367 11 C 0.395 3.605 12 O -0.504 6.504 13 N -0.321 5.321 14 C 0.018 3.982 15 C -0.054 4.054 16 C -0.188 4.188 17 C 0.157 3.843 18 N -0.386 5.386 19 C -0.210 4.210 20 N 0.559 4.441 21 O -0.394 6.394 22 O -0.393 6.393 23 C -0.071 4.071 24 H 0.078 0.922 25 H 0.012 0.988 26 H 0.008 0.992 27 H 0.243 0.757 28 H 0.263 0.737 29 H 0.160 0.840 30 H 0.195 0.805 31 H 0.256 0.744 32 H 0.241 0.759 33 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 3.966 -18.955 -2.032 19.472 hybrid contribution 0.958 0.558 0.320 1.154 sum 4.923 -18.397 -1.712 19.121 Atomic orbital electron populations 1.70115 1.08149 1.28622 1.49855 1.25990 0.95736 1.03674 0.93930 0.85248 0.77935 0.76862 0.79427 1.18689 1.21240 1.18846 1.21576 0.94377 0.90511 1.53009 0.89801 1.18477 0.87977 0.82867 0.94500 1.45329 1.11355 1.03479 1.76570 1.16180 0.84994 0.81392 0.77978 1.90849 1.15917 1.84292 1.59378 1.42282 1.10439 1.02088 1.77275 1.17019 0.96889 0.83636 1.00673 1.21620 0.94015 0.96079 0.93663 1.20829 1.03054 0.91009 1.03891 1.17494 0.88489 0.87606 0.90708 1.42919 1.23251 1.05829 1.66628 1.20157 0.97992 0.90312 1.12533 1.43576 1.01113 1.00763 0.98692 1.94435 1.72321 1.33215 1.39432 1.94539 0.96322 1.79169 1.69294 1.20297 1.01446 0.89374 0.95957 0.92238 0.98841 0.99236 0.75662 0.73666 0.83985 0.80511 0.74377 0.75887 0.82145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.30 13.29 21.45 0.28 -54.02 16 2 C 0.01 0.36 5.46 84.66 0.46 0.82 16 3 Si 0.98 41.01 29.54 68.60 2.03 43.03 16 4 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 5 H -0.29 -11.97 7.11 99.48 0.71 -11.27 16 6 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 7 C -0.56 -28.97 9.28 25.60 0.24 -28.73 16 8 H 0.08 3.91 7.60 -2.91 -0.02 3.89 16 9 C 0.28 14.79 5.43 85.63 0.46 15.26 16 10 N -0.71 -27.96 5.55 -482.29 -2.68 -30.64 16 11 C 0.69 25.79 8.41 179.05 1.51 27.29 16 12 O -0.62 -28.17 13.83 -4.02 -0.06 -28.23 16 13 N -0.67 -17.41 5.35 -317.01 -1.70 -19.11 16 14 C 0.12 2.88 6.29 38.09 0.24 3.12 16 15 C -0.03 -0.80 8.69 22.37 0.19 -0.61 16 16 C -0.16 -3.03 9.89 22.38 0.22 -2.81 16 17 C 0.27 5.11 6.72 38.16 0.26 5.37 16 18 N -0.84 -11.24 8.86 -51.25 -0.45 -11.69 16 19 C -0.12 -2.73 6.51 36.49 0.24 -2.49 16 20 N 0.05 1.15 4.29 -46.19 -0.20 0.95 16 21 O -0.18 -4.65 16.72 18.89 0.32 -4.34 16 22 O -0.18 -4.83 18.94 18.87 0.36 -4.47 16 23 C -0.05 -1.07 9.58 22.37 0.21 -0.85 16 24 H 0.27 14.75 8.31 -92.70 -0.77 13.98 16 25 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 26 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 27 H 0.41 12.87 8.34 -92.71 -0.77 12.09 16 28 H 0.42 7.79 8.84 -92.71 -0.82 6.97 16 29 H 0.14 4.18 6.28 -2.91 -0.02 4.16 16 30 H 0.18 2.10 8.06 -2.91 -0.02 2.08 16 31 H 0.42 3.00 8.85 -92.71 -0.82 2.18 16 32 H 0.41 5.88 6.43 -92.71 -0.60 5.28 16 33 H 0.16 3.03 8.01 -2.91 -0.02 3.00 16 Total: -1.00 -70.38 300.93 0.15 -70.23 By element: Atomic # 1 Polarization: 23.70 SS G_CDS: -1.78 Total: 21.91 kcal Atomic # 6 Polarization: 12.33 SS G_CDS: 4.03 Total: 16.37 kcal Atomic # 7 Polarization: -109.77 SS G_CDS: -4.74 Total: -114.51 kcal Atomic # 8 Polarization: -37.65 SS G_CDS: 0.62 Total: -37.03 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.03 kcal Total: -70.38 0.15 -70.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673495455.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.652 kcal (2) G-P(sol) polarization free energy of solvation -70.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds