Wall clock time and date at job start Tue Mar 31 2020 02:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53006 * 109.46909 * 2 1 4 4 N 1.46495 * 109.47513 * 120.00112 * 2 1 3 5 5 C 1.34775 * 120.00312 * 155.00051 * 4 2 1 6 6 S 1.71199 * 119.99907 * 0.02562 * 5 4 2 7 7 N 1.34779 * 120.00081 * 179.97438 * 5 4 2 8 8 C 1.39963 * 119.99947 * 175.79392 * 7 5 4 9 9 C 1.38931 * 120.00256 * 44.61458 * 8 7 5 10 10 C 1.38000 * 119.99709 * 180.02562 * 9 8 7 11 11 C 1.38905 * 120.00239 * 0.02562 * 10 9 8 12 12 O 1.35784 * 119.99603 * 179.97438 * 11 10 9 13 13 C 1.34816 * 117.00076 * 6.55309 * 12 11 10 14 14 H 1.08007 * 119.99858 * 5.47766 * 13 12 11 15 15 C 1.38628 * 119.99997 * 185.48708 * 13 12 11 16 16 N 1.31576 * 120.00117 * 179.97438 * 15 13 12 17 17 Si 1.86795 * 119.99886 * 359.97438 * 15 13 12 18 18 H 1.48506 * 109.47391 * 90.00461 * 17 15 13 19 19 H 1.48496 * 109.47004 * 210.00059 * 17 15 13 20 20 H 1.48494 * 109.47374 * 330.00280 * 17 15 13 21 21 C 1.38902 * 120.00754 * 0.23641 * 11 10 9 22 22 C 1.38012 * 120.00100 * 359.48343 * 21 11 10 23 23 H 1.09000 * 109.47792 * 299.99946 * 1 2 3 24 24 H 1.08997 * 109.47411 * 60.00272 * 1 2 3 25 25 H 1.09010 * 109.46936 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47159 * 240.00437 * 2 1 3 27 27 H 1.09000 * 109.47346 * 300.00196 * 3 2 1 28 28 H 1.09003 * 109.46853 * 60.00250 * 3 2 1 29 29 H 1.09003 * 109.46985 * 179.97438 * 3 2 1 30 30 H 0.97006 * 119.99793 * 335.00284 * 4 2 1 31 31 H 0.96998 * 120.00181 * 355.79787 * 7 5 4 32 32 H 1.08004 * 119.99992 * 359.97438 * 9 8 7 33 33 H 1.08003 * 119.99751 * 179.97438 * 10 9 8 34 34 H 0.96994 * 120.00137 * 180.02562 * 16 15 13 35 35 H 1.07998 * 120.00232 * 179.74704 * 21 11 10 36 36 H 1.07992 * 120.00132 * 180.26245 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 3.2403 -1.2591 1.1943 6 16 4.2221 -1.1737 -0.2056 7 7 3.6898 -1.8940 2.2949 8 6 4.9206 -2.5598 2.2652 9 6 6.0253 -1.9519 1.6817 10 6 7.2386 -2.6087 1.6519 11 6 7.3554 -3.8776 2.2048 12 8 8.5492 -4.5239 2.1750 13 6 9.6103 -3.8286 1.7188 14 1 9.5073 -2.7800 1.4814 15 6 10.8336 -4.4597 1.5542 16 7 11.8691 -3.7813 1.1084 17 14 11.0118 -6.2731 1.9652 18 1 10.7108 -7.0860 0.7593 19 1 12.4018 -6.5453 2.4112 20 1 10.0645 -6.6299 3.0517 21 6 6.2497 -4.4876 2.7834 22 6 5.0376 -3.8287 2.8184 23 1 -0.3635 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.6765 1.9564 -0.8899 28 1 1.6765 1.9563 0.8900 29 1 3.1299 1.4426 0.0005 30 1 1.4622 -0.7387 1.9894 31 1 3.1603 -1.8896 3.1076 32 1 5.9342 -0.9658 1.2507 33 1 8.0973 -2.1363 1.1980 34 1 12.7249 -4.2230 0.9929 35 1 6.3396 -5.4759 3.2096 36 1 4.1790 -4.3013 3.2720 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000023104221.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:17 Heat of formation + Delta-G solvation = 21.491085 kcal Electronic energy + Delta-G solvation = -18869.132791 eV Core-core repulsion = 15866.628759 eV Total energy + Delta-G solvation = -3002.504031 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.85365 -38.82255 -37.34403 -35.16053 -32.40358 -31.77970 -30.31436 -28.03900 -27.57733 -25.18269 -24.21061 -22.17452 -21.98445 -20.93365 -18.73824 -17.83820 -17.74547 -16.94512 -15.98011 -15.32214 -15.05406 -14.75416 -14.24303 -13.87419 -13.82910 -13.73276 -13.11506 -12.84697 -12.66084 -12.56331 -12.27890 -12.19642 -11.80455 -11.65338 -11.35403 -11.22273 -10.94596 -10.77968 -10.74680 -10.17894 -9.58775 -9.36727 -8.80787 -8.37229 -7.68575 -7.25570 -6.68395 -6.39900 -4.05179 1.29933 2.00583 2.16957 2.32120 2.67536 3.23934 3.28464 3.41700 3.51360 4.25332 4.47625 4.51199 4.70031 4.85474 4.91476 5.11177 5.25297 5.32936 5.47554 5.52500 5.58036 5.64264 5.74777 5.88525 6.08906 6.10192 6.22301 6.34167 6.54624 6.70040 6.83696 6.99615 7.16693 7.35741 7.44512 7.62822 7.83983 8.05021 8.94833 9.56002 10.67462 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.038914 B = 0.003590 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.353880 B = 7798.043265 C = 8253.947227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.137 3.863 3 C -0.164 4.164 4 N -0.688 5.688 5 C 0.553 3.447 6 S -0.626 6.626 7 N -0.611 5.611 8 C 0.013 3.987 9 C -0.015 4.015 10 C -0.216 4.216 11 C 0.168 3.832 12 O -0.212 6.212 13 C -0.387 4.387 14 H 0.109 0.891 15 C 0.063 3.937 16 N -0.876 5.876 17 Si 0.905 3.095 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.259 1.259 21 C -0.192 4.192 22 C -0.073 4.073 23 H 0.058 0.942 24 H 0.079 0.921 25 H 0.061 0.939 26 H 0.116 0.884 27 H 0.069 0.931 28 H 0.050 0.950 29 H 0.075 0.925 30 H 0.393 0.607 31 H 0.397 0.603 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.280 0.720 35 H 0.121 0.879 36 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.329 6.329 3.477 23.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.033 3.967 3 C -0.223 4.223 4 N -0.319 5.319 5 C 0.194 3.806 6 S -0.496 6.496 7 N -0.233 5.233 8 C -0.079 4.079 9 C -0.037 4.037 10 C -0.237 4.237 11 C 0.115 3.885 12 O -0.117 6.117 13 C -0.462 4.462 14 H 0.126 0.874 15 C -0.140 4.140 16 N -0.513 5.513 17 Si 0.731 3.269 18 H -0.198 1.198 19 H -0.208 1.208 20 H -0.183 1.183 21 C -0.212 4.212 22 C -0.094 4.094 23 H 0.077 0.923 24 H 0.098 0.902 25 H 0.081 0.919 26 H 0.133 0.867 27 H 0.088 0.912 28 H 0.069 0.931 29 H 0.094 0.906 30 H 0.229 0.771 31 H 0.234 0.766 32 H 0.155 0.845 33 H 0.155 0.845 34 H 0.090 0.910 35 H 0.139 0.861 36 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -21.352 6.182 2.404 22.359 hybrid contribution -0.863 -0.696 1.513 1.876 sum -22.215 5.485 3.918 23.216 Atomic orbital electron populations 1.22106 0.93947 1.02699 1.03120 1.21390 0.93468 0.93682 0.88153 1.22178 1.03719 0.94603 1.01779 1.45095 1.14149 1.54985 1.17638 1.22461 0.85943 0.81135 0.91037 1.93497 1.56455 1.78340 1.21329 1.42080 1.20585 1.49992 1.10634 1.17001 0.83214 0.94103 1.13630 1.21110 0.89734 1.00466 0.92400 1.21140 0.98511 0.96681 1.07389 1.19212 0.85809 0.91173 0.92355 1.83577 1.14035 1.40449 1.73608 1.20812 0.85572 0.95793 1.44053 0.87391 1.24485 0.93975 1.00025 0.95538 1.69657 1.01295 1.37315 1.43076 0.86181 0.77556 0.83309 0.79865 1.19841 1.20792 1.18321 1.19880 0.91240 1.01376 1.08715 1.20301 0.96877 0.91865 1.00353 0.92311 0.90245 0.91949 0.86662 0.91192 0.93103 0.90573 0.77149 0.76611 0.84461 0.84473 0.91004 0.86088 0.86922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.86 9.38 37.15 0.35 -0.51 16 2 C 0.14 1.16 2.95 -67.93 -0.20 0.96 16 3 C -0.16 -1.39 9.43 37.16 0.35 -1.04 16 4 N -0.69 -6.05 5.08 -55.52 -0.28 -6.33 16 5 C 0.55 7.29 7.81 -86.92 -0.68 6.61 16 6 S -0.63 -11.50 23.57 -107.50 -2.53 -14.03 16 7 N -0.61 -7.58 5.32 -11.36 -0.06 -7.64 16 8 C 0.01 0.21 5.96 -83.63 -0.50 -0.29 16 9 C -0.02 -0.29 7.86 -39.41 -0.31 -0.60 16 10 C -0.22 -4.84 9.12 -39.42 -0.36 -5.20 16 11 C 0.17 3.87 6.65 -39.09 -0.26 3.61 16 12 O -0.21 -5.59 8.58 -0.02 0.00 -5.59 16 13 C -0.39 -10.95 9.89 30.88 0.31 -10.65 16 14 H 0.11 3.14 5.54 -52.48 -0.29 2.85 16 15 C 0.06 1.79 5.49 -17.52 -0.10 1.69 16 16 N -0.88 -25.48 13.96 55.48 0.77 -24.71 16 17 Si 0.91 21.69 28.62 -169.99 -4.86 16.83 16 18 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.26 -6.17 7.11 56.52 0.40 -5.77 16 21 C -0.19 -3.70 9.98 -39.42 -0.39 -4.09 16 22 C -0.07 -1.19 9.96 -39.41 -0.39 -1.58 16 23 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 24 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 26 H 0.12 1.29 6.82 -51.93 -0.35 0.93 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 0.88 7.48 -51.93 -0.39 0.49 16 30 H 0.39 2.16 8.62 -40.82 -0.35 1.81 16 31 H 0.40 3.32 8.84 -40.82 -0.36 2.96 16 32 H 0.14 2.72 6.01 -42.02 -0.25 2.47 16 33 H 0.14 3.27 5.72 -52.48 -0.30 2.97 16 34 H 0.28 7.51 8.31 -40.82 -0.34 7.17 16 35 H 0.12 2.14 8.06 -52.49 -0.42 1.72 16 36 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 LS Contribution 315.12 15.07 4.75 4.75 Total: -1.00 -32.88 315.12 -8.80 -41.67 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -4.39 Total: 6.15 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: -2.18 Total: -11.09 kcal Atomic # 7 Polarization: -39.11 SS G_CDS: 0.43 Total: -38.68 kcal Atomic # 8 Polarization: -5.59 SS G_CDS: 0.00 Total: -5.59 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.86 Total: 16.83 kcal Atomic # 16 Polarization: -11.50 SS G_CDS: -2.53 Total: -14.03 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.88 -8.80 -41.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023104221.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.162 kcal (2) G-P(sol) polarization free energy of solvation -32.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds