Wall clock time and date at job start Tue Mar 31 2020 02:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53006 * 109.46909 * 2 1 4 4 N 1.46495 * 109.47513 * 120.00112 * 2 1 3 5 5 C 1.34775 * 120.00312 * 155.00051 * 4 2 1 6 6 S 1.71199 * 119.99907 * 0.02562 * 5 4 2 7 7 N 1.34779 * 120.00081 * 179.97438 * 5 4 2 8 8 C 1.39963 * 119.99947 * 175.79392 * 7 5 4 9 9 C 1.38931 * 120.00256 * 44.61458 * 8 7 5 10 10 C 1.38000 * 119.99709 * 180.02562 * 9 8 7 11 11 C 1.38905 * 120.00239 * 0.02562 * 10 9 8 12 12 O 1.35784 * 119.99603 * 179.97438 * 11 10 9 13 13 C 1.34816 * 117.00076 * 6.55309 * 12 11 10 14 14 H 1.08007 * 119.99858 * 5.47766 * 13 12 11 15 15 C 1.38628 * 119.99997 * 185.48708 * 13 12 11 16 16 N 1.31576 * 120.00117 * 179.97438 * 15 13 12 17 17 Si 1.86795 * 119.99886 * 359.97438 * 15 13 12 18 18 H 1.48506 * 109.47391 * 90.00461 * 17 15 13 19 19 H 1.48496 * 109.47004 * 210.00059 * 17 15 13 20 20 H 1.48494 * 109.47374 * 330.00280 * 17 15 13 21 21 C 1.38902 * 120.00754 * 0.23641 * 11 10 9 22 22 C 1.38012 * 120.00100 * 359.48343 * 21 11 10 23 23 H 1.09000 * 109.47792 * 299.99946 * 1 2 3 24 24 H 1.08997 * 109.47411 * 60.00272 * 1 2 3 25 25 H 1.09010 * 109.46936 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47159 * 240.00437 * 2 1 3 27 27 H 1.09000 * 109.47346 * 300.00196 * 3 2 1 28 28 H 1.09003 * 109.46853 * 60.00250 * 3 2 1 29 29 H 1.09003 * 109.46985 * 179.97438 * 3 2 1 30 30 H 0.97006 * 119.99793 * 335.00284 * 4 2 1 31 31 H 0.96998 * 120.00181 * 355.79787 * 7 5 4 32 32 H 1.08004 * 119.99992 * 359.97438 * 9 8 7 33 33 H 1.08003 * 119.99751 * 179.97438 * 10 9 8 34 34 H 0.96994 * 120.00137 * 180.02562 * 16 15 13 35 35 H 1.07998 * 120.00232 * 179.74704 * 21 11 10 36 36 H 1.07992 * 120.00132 * 180.26245 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 3.2403 -1.2591 1.1943 6 16 4.2221 -1.1737 -0.2056 7 7 3.6898 -1.8940 2.2949 8 6 4.9206 -2.5598 2.2652 9 6 6.0253 -1.9519 1.6817 10 6 7.2386 -2.6087 1.6519 11 6 7.3554 -3.8776 2.2048 12 8 8.5492 -4.5239 2.1750 13 6 9.6103 -3.8286 1.7188 14 1 9.5073 -2.7800 1.4814 15 6 10.8336 -4.4597 1.5542 16 7 11.8691 -3.7813 1.1084 17 14 11.0118 -6.2731 1.9652 18 1 10.7108 -7.0860 0.7593 19 1 12.4018 -6.5453 2.4112 20 1 10.0645 -6.6299 3.0517 21 6 6.2497 -4.4876 2.7834 22 6 5.0376 -3.8287 2.8184 23 1 -0.3635 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.6765 1.9564 -0.8899 28 1 1.6765 1.9563 0.8900 29 1 3.1299 1.4426 0.0005 30 1 1.4622 -0.7387 1.9894 31 1 3.1603 -1.8896 3.1076 32 1 5.9342 -0.9658 1.2507 33 1 8.0973 -2.1363 1.1980 34 1 12.7249 -4.2230 0.9929 35 1 6.3396 -5.4759 3.2096 36 1 4.1790 -4.3013 3.2720 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000023104221.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:17 Heat of formation + Delta-G solvation = -0.720339 kcal Electronic energy + Delta-G solvation = -18870.095950 eV Core-core repulsion = 15866.628759 eV Total energy + Delta-G solvation = -3003.467191 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.26715 -40.24149 -38.69241 -36.47307 -34.41778 -32.79618 -31.90845 -29.56452 -28.16517 -27.13157 -25.45482 -23.58897 -23.22328 -22.20286 -20.18220 -19.47653 -19.16987 -18.56781 -17.13218 -16.68112 -16.38148 -15.90378 -15.73297 -15.62010 -15.40471 -14.93458 -14.44042 -14.21907 -14.16692 -13.81050 -13.36327 -13.16598 -13.06879 -12.99298 -12.64981 -12.50777 -12.25842 -12.19251 -11.99799 -11.88339 -11.36948 -10.96681 -10.51357 -9.92491 -9.11596 -8.84591 -8.48279 -8.16949 -6.20713 0.04520 0.59744 0.72086 0.91949 1.33700 1.38832 1.50162 1.55266 2.30348 2.56581 2.76498 3.10443 3.12441 3.87406 4.08543 4.10178 4.15442 4.29875 4.48987 4.50187 4.67435 4.72444 4.73632 4.90831 4.92300 5.02880 5.19864 5.24659 5.33899 5.36758 5.39050 5.59683 5.60718 5.79248 5.86575 6.01392 6.25129 6.44632 6.85405 7.57351 8.63674 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.038914 B = 0.003590 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.353880 B = 7798.043265 C = 8253.947227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.133 3.867 3 C -0.160 4.160 4 N -0.652 5.652 5 C 0.580 3.420 6 S -0.731 6.731 7 N -0.596 5.596 8 C 0.043 3.957 9 C -0.023 4.023 10 C -0.235 4.235 11 C 0.132 3.868 12 O -0.237 6.237 13 C -0.398 4.398 14 H 0.076 0.924 15 C 0.008 3.992 16 N -0.925 5.925 17 Si 0.975 3.025 18 H -0.268 1.268 19 H -0.267 1.267 20 H -0.255 1.255 21 C -0.185 4.185 22 C -0.054 4.054 23 H 0.080 0.920 24 H 0.089 0.911 25 H 0.065 0.935 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.040 0.960 30 H 0.419 0.581 31 H 0.428 0.572 32 H 0.131 0.869 33 H 0.102 0.898 34 H 0.285 0.715 35 H 0.144 0.856 36 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.273 5.382 5.785 28.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.029 3.971 3 C -0.218 4.218 4 N -0.282 5.282 5 C 0.217 3.783 6 S -0.603 6.603 7 N -0.221 5.221 8 C -0.051 4.051 9 C -0.045 4.045 10 C -0.256 4.256 11 C 0.082 3.918 12 O -0.144 6.144 13 C -0.475 4.475 14 H 0.094 0.906 15 C -0.190 4.190 16 N -0.565 5.565 17 Si 0.796 3.204 18 H -0.194 1.194 19 H -0.192 1.192 20 H -0.179 1.179 21 C -0.205 4.205 22 C -0.074 4.074 23 H 0.099 0.901 24 H 0.108 0.892 25 H 0.084 0.916 26 H 0.104 0.896 27 H 0.101 0.899 28 H 0.089 0.911 29 H 0.059 0.941 30 H 0.259 0.741 31 H 0.269 0.731 32 H 0.148 0.852 33 H 0.120 0.880 34 H 0.094 0.906 35 H 0.161 0.839 36 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -26.428 5.284 4.758 27.367 hybrid contribution 0.180 -0.139 0.821 0.852 sum -26.247 5.145 5.579 27.322 Atomic orbital electron populations 1.22056 0.90538 1.03500 1.04761 1.21521 0.95866 0.93086 0.86602 1.22127 1.01383 0.94885 1.03445 1.45087 1.12238 1.52004 1.18862 1.21753 0.86445 0.80695 0.89414 1.93880 1.59098 1.81727 1.25576 1.41707 1.19430 1.49379 1.11620 1.17025 0.83671 0.94081 1.10283 1.21095 0.89939 1.00436 0.93062 1.21008 0.98767 0.97328 1.08497 1.19756 0.86237 0.91731 0.94070 1.83515 1.14470 1.40516 1.75923 1.20680 0.87130 0.95000 1.44647 0.90635 1.25356 0.93394 1.04771 0.95528 1.69754 1.02011 1.39311 1.45455 0.85161 0.78135 0.77395 0.79680 1.19354 1.19177 1.17905 1.20289 0.90709 1.02295 1.07195 1.20792 0.97342 0.90800 0.98504 0.90113 0.89225 0.91557 0.89561 0.89928 0.91119 0.94122 0.74081 0.73059 0.85159 0.87976 0.90553 0.83851 0.81199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.38 71.98 0.68 -0.27 16 2 C 0.13 1.88 2.95 44.99 0.13 2.01 16 3 C -0.16 -2.39 9.43 71.98 0.68 -1.71 16 4 N -0.65 -8.83 5.08 -329.58 -1.67 -10.51 16 5 C 0.58 13.69 7.81 179.05 1.40 15.09 16 6 S -0.73 -27.35 23.57 -56.49 -1.33 -28.69 16 7 N -0.60 -12.17 5.32 -189.86 -1.01 -13.18 16 8 C 0.04 1.30 5.96 38.17 0.23 1.53 16 9 C -0.02 -0.92 7.86 22.38 0.18 -0.74 16 10 C -0.24 -11.21 9.12 22.37 0.20 -11.01 16 11 C 0.13 6.26 6.65 22.59 0.15 6.41 16 12 O -0.24 -13.03 8.58 -22.98 -0.20 -13.22 16 13 C -0.40 -24.19 9.89 67.91 0.67 -23.52 16 14 H 0.08 4.90 5.54 -2.91 -0.02 4.89 16 15 C 0.01 0.46 5.49 84.82 0.47 0.92 16 16 N -0.92 -56.90 13.96 21.61 0.30 -56.60 16 17 Si 0.97 46.00 28.62 68.60 1.96 47.96 16 18 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 19 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 20 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 21 C -0.18 -6.69 9.98 22.38 0.22 -6.46 16 22 C -0.05 -1.51 9.96 22.38 0.22 -1.29 16 23 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16 24 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 25 H 0.07 0.42 8.14 -2.38 -0.02 0.40 16 26 H 0.09 1.85 6.82 -2.39 -0.02 1.83 16 27 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.07 0.77 8.14 -2.39 -0.02 0.76 16 29 H 0.04 0.92 7.48 -2.39 -0.02 0.90 16 30 H 0.42 2.08 8.62 -92.70 -0.80 1.28 16 31 H 0.43 4.35 8.84 -92.71 -0.82 3.54 16 32 H 0.13 5.41 6.01 -9.56 -0.06 5.35 16 33 H 0.10 5.51 5.72 -2.91 -0.02 5.49 16 34 H 0.28 16.02 8.31 -92.71 -0.77 15.25 16 35 H 0.14 4.57 8.06 -2.91 -0.02 4.54 16 36 H 0.17 2.95 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -80.86 315.12 2.74 -78.12 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -0.54 Total: 15.15 kcal Atomic # 6 Polarization: -24.27 SS G_CDS: 5.23 Total: -19.04 kcal Atomic # 7 Polarization: -77.90 SS G_CDS: -2.38 Total: -80.29 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: -0.20 Total: -13.22 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 1.96 Total: 47.96 kcal Atomic # 16 Polarization: -27.35 SS G_CDS: -1.33 Total: -28.69 kcal Total: -80.86 2.74 -78.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023104221.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.403 kcal (2) G-P(sol) polarization free energy of solvation -80.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds