Wall clock time and date at job start Tue Mar 31 2020 01:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33809 * 124.52503 * 2 1 4 4 C 1.37480 * 115.10275 * 179.82628 * 3 2 1 5 5 C 1.36651 * 113.29423 * 0.45404 * 4 3 2 6 6 C 1.46576 * 125.45650 * 179.72301 * 5 4 3 7 7 O 1.21697 * 120.00296 * 28.32934 * 6 5 4 8 8 N 1.34780 * 120.00003 * 208.33300 * 6 5 4 9 9 C 1.46971 * 120.59280 * 7.68559 * 8 6 5 10 10 C 1.53813 * 108.39450 * 124.75792 * 9 8 6 11 11 N 1.46966 * 108.58134 * 49.64142 * 10 9 8 12 12 C 1.36937 * 120.59455 * 124.61812 * 11 10 9 13 13 H 1.08002 * 120.00023 * 220.46683 * 12 11 10 14 14 C 1.38814 * 119.99681 * 40.47319 * 12 11 10 15 15 N 1.31614 * 119.99992 * 325.26568 * 14 12 11 16 16 Si 1.86801 * 119.99738 * 145.26331 * 14 12 11 17 17 H 1.48497 * 109.47197 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.46958 * 119.99680 * 16 14 12 19 19 H 1.48493 * 109.47227 * 239.99864 * 16 14 12 20 20 C 1.46971 * 118.80787 * 304.64612 * 11 10 9 21 21 C 1.46961 * 120.59874 * 187.97061 * 8 6 5 22 22 S 1.70620 * 124.51942 * 180.30508 * 2 1 3 23 23 H 1.08997 * 109.47088 * 179.72149 * 1 2 3 24 24 H 1.08999 * 109.46656 * 59.71813 * 1 2 3 25 25 H 1.08995 * 109.46841 * 299.72111 * 1 2 3 26 26 H 1.07998 * 122.45122 * 0.02562 * 3 2 1 27 27 H 1.07992 * 123.35306 * 180.19141 * 4 3 2 28 28 H 1.08989 * 109.61302 * 244.54385 * 9 8 6 29 29 H 1.09007 * 109.60596 * 5.05672 * 9 8 6 30 30 H 1.09002 * 109.74456 * 289.85223 * 10 9 8 31 31 H 1.08998 * 109.53235 * 169.30491 * 10 9 8 32 32 H 0.97001 * 119.99959 * 179.97438 * 15 14 12 33 33 H 1.09001 * 109.60779 * 295.47790 * 20 11 10 34 34 H 1.09003 * 109.74548 * 175.05248 * 20 11 10 35 35 H 1.09004 * 109.60752 * 354.94329 * 21 8 6 36 36 H 1.08996 * 109.61512 * 115.45661 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1024 0.0000 4 6 3.6217 0.8774 0.0038 5 6 3.9493 -0.4493 -0.0031 6 6 5.3123 -0.9884 -0.0070 7 8 6.2199 -0.3521 0.4955 8 7 5.5605 -2.1890 -0.5671 9 6 4.5148 -2.8920 -1.3235 10 6 5.0592 -3.2059 -2.7274 11 7 6.3785 -3.8382 -2.5875 12 6 6.6303 -5.0584 -3.1558 13 1 7.2086 -5.7954 -2.6184 14 6 6.1424 -5.3479 -4.4227 15 7 4.9772 -4.8695 -4.8044 16 14 7.1396 -6.4166 -5.5859 17 1 8.4033 -6.8255 -4.9217 18 1 6.3548 -7.6258 -5.9427 19 1 7.4531 -5.6487 -6.8175 20 6 7.4224 -3.1377 -1.8263 21 6 6.8797 -2.8213 -0.4272 22 16 2.4739 -1.4058 -0.0075 23 1 -0.3633 -1.0276 -0.0050 24 1 -0.3632 0.5182 -0.8875 25 1 -0.3633 0.5095 0.8924 26 1 1.8430 2.0964 0.0004 27 1 4.3551 1.6700 0.0073 28 1 4.2549 -3.8193 -0.8132 29 1 3.6327 -2.2568 -1.4051 30 1 5.1546 -2.2834 -3.3001 31 1 4.3791 -3.8877 -3.2379 32 1 4.6364 -5.0715 -5.6898 33 1 7.6860 -2.2104 -2.3349 34 1 8.3048 -3.7721 -1.7416 35 1 7.5599 -2.1395 0.0833 36 1 6.7844 -3.7438 0.1455 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049333288.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:19 Heat of formation + Delta-G solvation = 32.574853 kcal Electronic energy + Delta-G solvation = -19796.054440 eV Core-core repulsion = 16794.031037 eV Total energy + Delta-G solvation = -3002.023403 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.64725 -37.80031 -36.60193 -33.89754 -32.24462 -31.36089 -30.21239 -27.77723 -26.45065 -23.92852 -23.36089 -22.81530 -21.20126 -19.69047 -18.23225 -17.90992 -16.47936 -15.82985 -15.62282 -14.97636 -14.69342 -14.63325 -14.00765 -13.64210 -13.40096 -13.37273 -13.29249 -12.99052 -12.60015 -12.37974 -12.07293 -11.84379 -11.58832 -11.38108 -11.10456 -10.74928 -10.67600 -10.51363 -10.25009 -10.07305 -9.97234 -9.56748 -8.61251 -8.40669 -8.26273 -8.20129 -6.61854 -6.11957 -3.41207 0.65394 1.53784 1.97554 2.52005 3.29442 3.32455 3.43509 3.46627 3.55197 4.40500 4.73079 4.87858 5.06738 5.09739 5.31595 5.35358 5.37358 5.57087 5.77352 5.77933 5.85982 5.90492 6.03717 6.11436 6.13530 6.26539 6.35844 6.43511 6.43777 6.77189 6.92346 7.18835 7.53563 7.81951 7.85767 8.42409 8.48527 9.08769 9.67513 10.33494 10.95030 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.024846 B = 0.004982 C = 0.004342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.664817 B = 5618.748541 C = 6447.327105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.224 4.224 3 C -0.158 4.158 4 C -0.063 4.063 5 C -0.260 4.260 6 C 0.582 3.418 7 O -0.549 6.549 8 N -0.593 5.593 9 C 0.069 3.931 10 C 0.132 3.868 11 N -0.594 5.594 12 C -0.285 4.285 13 H 0.071 0.929 14 C 0.042 3.958 15 N -0.870 5.870 16 Si 0.871 3.129 17 H -0.274 1.274 18 H -0.291 1.291 19 H -0.286 1.286 20 C 0.135 3.865 21 C 0.096 3.904 22 S 0.235 5.765 23 H 0.067 0.933 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.138 0.862 27 H 0.147 0.853 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.014 0.986 31 H 0.136 0.864 32 H 0.260 0.740 33 H 0.025 0.975 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.580 7.751 8.539 14.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.343 4.343 3 C -0.188 4.188 4 C -0.096 4.096 5 C -0.381 4.381 6 C 0.370 3.630 7 O -0.430 6.430 8 N -0.324 5.324 9 C -0.056 4.056 10 C 0.006 3.994 11 N -0.317 5.317 12 C -0.413 4.413 13 H 0.088 0.912 14 C -0.160 4.160 15 N -0.510 5.510 16 Si 0.698 3.302 17 H -0.199 1.199 18 H -0.218 1.218 19 H -0.212 1.212 20 C 0.008 3.992 21 C -0.028 4.028 22 S 0.504 5.496 23 H 0.086 0.914 24 H 0.095 0.905 25 H 0.093 0.907 26 H 0.156 0.844 27 H 0.165 0.835 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.032 0.968 31 H 0.153 0.847 32 H 0.071 0.929 33 H 0.043 0.957 34 H 0.088 0.912 35 H 0.101 0.899 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.541 6.475 8.628 13.759 hybrid contribution 0.686 1.135 -0.735 1.516 sum -7.855 7.610 7.893 13.487 Atomic orbital electron populations 1.20333 0.87796 1.02959 1.02944 1.24589 1.01729 0.99547 1.08440 1.19826 0.92585 0.99359 1.07061 1.20631 0.96092 0.94969 0.97887 1.24621 0.97339 0.98036 1.18064 1.17066 0.86203 0.81176 0.78591 1.90756 1.45113 1.58845 1.48251 1.47980 1.14586 1.18534 1.51342 1.23244 0.89278 0.95816 0.97307 1.22098 0.89604 0.97987 0.89755 1.43975 1.06534 1.19090 1.62117 1.18935 1.34147 0.92135 0.96091 0.91183 1.25416 0.95903 0.97770 0.96958 1.69816 1.14617 1.46951 1.19630 0.86754 0.82031 0.79525 0.81879 1.19921 1.21801 1.21188 1.21311 0.92387 0.95962 0.89560 1.22269 0.83473 0.96873 1.00198 1.83483 0.93244 1.06375 1.66528 0.91382 0.90504 0.90668 0.84430 0.83518 0.91390 0.90893 0.96785 0.84666 0.92883 0.95667 0.91234 0.89855 0.91756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 10.33 36.01 0.37 -0.31 16 2 C -0.22 -2.62 6.28 -35.86 -0.23 -2.85 16 3 C -0.16 -1.91 10.00 -41.41 -0.41 -2.32 16 4 C -0.06 -0.91 10.12 -40.43 -0.41 -1.32 16 5 C -0.26 -4.27 5.79 -36.79 -0.21 -4.48 16 6 C 0.58 11.27 7.58 -12.90 -0.10 11.17 16 7 O -0.55 -11.87 16.39 5.19 0.09 -11.78 16 8 N -0.59 -11.49 2.94 -173.79 -0.51 -12.00 16 9 C 0.07 1.32 5.72 -3.36 -0.02 1.30 16 10 C 0.13 3.05 5.93 -3.36 -0.02 3.03 16 11 N -0.59 -14.48 2.98 -171.76 -0.51 -14.99 16 12 C -0.29 -7.52 9.35 -15.06 -0.14 -7.66 16 13 H 0.07 1.84 8.02 -52.49 -0.42 1.41 16 14 C 0.04 1.10 5.41 -17.43 -0.09 1.01 16 15 N -0.87 -23.45 10.61 55.49 0.59 -22.86 16 16 Si 0.87 20.39 29.67 -169.99 -5.04 15.34 16 17 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 C 0.13 2.84 6.67 -3.60 -0.02 2.82 16 21 C 0.10 1.82 6.60 -3.60 -0.02 1.79 16 22 S 0.23 3.16 19.15 -107.50 -2.06 1.10 16 23 H 0.07 0.52 8.11 -51.93 -0.42 0.10 16 24 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.14 1.32 8.06 -52.49 -0.42 0.89 16 27 H 0.15 2.01 8.06 -52.49 -0.42 1.59 16 28 H 0.07 1.28 8.14 -51.94 -0.42 0.86 16 29 H 0.07 1.26 3.86 -24.81 -0.10 1.17 16 30 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.14 3.42 5.37 -51.93 -0.28 3.15 16 32 H 0.26 6.72 8.31 -40.82 -0.34 6.39 16 33 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 1.38 7.94 -51.93 -0.41 0.97 16 35 H 0.08 1.53 7.00 -51.93 -0.36 1.17 16 36 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 306.40 15.07 4.62 4.62 Total: -1.00 -29.78 306.40 -8.65 -38.44 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -4.51 Total: -0.04 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: -1.31 Total: 2.18 kcal Atomic # 7 Polarization: -49.42 SS G_CDS: -0.43 Total: -49.85 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.09 Total: -11.78 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.04 Total: 15.34 kcal Atomic # 16 Polarization: 3.16 SS G_CDS: -2.06 Total: 1.10 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.78 -8.65 -38.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049333288.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.011 kcal (2) G-P(sol) polarization free energy of solvation -29.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds