Wall clock time and date at job start Tue Mar 31 2020 01:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33809 * 124.52503 * 2 1 4 4 C 1.37480 * 115.10275 * 179.82628 * 3 2 1 5 5 C 1.36651 * 113.29423 * 0.45404 * 4 3 2 6 6 C 1.46576 * 125.45650 * 179.72301 * 5 4 3 7 7 O 1.21697 * 120.00296 * 28.32934 * 6 5 4 8 8 N 1.34780 * 120.00003 * 208.33300 * 6 5 4 9 9 C 1.46971 * 120.59280 * 7.68559 * 8 6 5 10 10 C 1.53813 * 108.39450 * 124.75792 * 9 8 6 11 11 N 1.46966 * 108.58134 * 49.64142 * 10 9 8 12 12 C 1.36937 * 120.59455 * 124.61812 * 11 10 9 13 13 H 1.08002 * 120.00023 * 220.46683 * 12 11 10 14 14 C 1.38814 * 119.99681 * 40.47319 * 12 11 10 15 15 N 1.31614 * 119.99992 * 325.26568 * 14 12 11 16 16 Si 1.86801 * 119.99738 * 145.26331 * 14 12 11 17 17 H 1.48497 * 109.47197 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.46958 * 119.99680 * 16 14 12 19 19 H 1.48493 * 109.47227 * 239.99864 * 16 14 12 20 20 C 1.46971 * 118.80787 * 304.64612 * 11 10 9 21 21 C 1.46961 * 120.59874 * 187.97061 * 8 6 5 22 22 S 1.70620 * 124.51942 * 180.30508 * 2 1 3 23 23 H 1.08997 * 109.47088 * 179.72149 * 1 2 3 24 24 H 1.08999 * 109.46656 * 59.71813 * 1 2 3 25 25 H 1.08995 * 109.46841 * 299.72111 * 1 2 3 26 26 H 1.07998 * 122.45122 * 0.02562 * 3 2 1 27 27 H 1.07992 * 123.35306 * 180.19141 * 4 3 2 28 28 H 1.08989 * 109.61302 * 244.54385 * 9 8 6 29 29 H 1.09007 * 109.60596 * 5.05672 * 9 8 6 30 30 H 1.09002 * 109.74456 * 289.85223 * 10 9 8 31 31 H 1.08998 * 109.53235 * 169.30491 * 10 9 8 32 32 H 0.97001 * 119.99959 * 179.97438 * 15 14 12 33 33 H 1.09001 * 109.60779 * 295.47790 * 20 11 10 34 34 H 1.09003 * 109.74548 * 175.05248 * 20 11 10 35 35 H 1.09004 * 109.60752 * 354.94329 * 21 8 6 36 36 H 1.08996 * 109.61512 * 115.45661 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1024 0.0000 4 6 3.6217 0.8774 0.0038 5 6 3.9493 -0.4493 -0.0031 6 6 5.3123 -0.9884 -0.0070 7 8 6.2199 -0.3521 0.4955 8 7 5.5605 -2.1890 -0.5671 9 6 4.5148 -2.8920 -1.3235 10 6 5.0592 -3.2059 -2.7274 11 7 6.3785 -3.8382 -2.5875 12 6 6.6303 -5.0584 -3.1558 13 1 7.2086 -5.7954 -2.6184 14 6 6.1424 -5.3479 -4.4227 15 7 4.9772 -4.8695 -4.8044 16 14 7.1396 -6.4166 -5.5859 17 1 8.4033 -6.8255 -4.9217 18 1 6.3548 -7.6258 -5.9427 19 1 7.4531 -5.6487 -6.8175 20 6 7.4224 -3.1377 -1.8263 21 6 6.8797 -2.8213 -0.4272 22 16 2.4739 -1.4058 -0.0075 23 1 -0.3633 -1.0276 -0.0050 24 1 -0.3632 0.5182 -0.8875 25 1 -0.3633 0.5095 0.8924 26 1 1.8430 2.0964 0.0004 27 1 4.3551 1.6700 0.0073 28 1 4.2549 -3.8193 -0.8132 29 1 3.6327 -2.2568 -1.4051 30 1 5.1546 -2.2834 -3.3001 31 1 4.3791 -3.8877 -3.2379 32 1 4.6364 -5.0715 -5.6898 33 1 7.6860 -2.2104 -2.3349 34 1 8.3048 -3.7721 -1.7416 35 1 7.5599 -2.1395 0.0833 36 1 6.7844 -3.7438 0.1455 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049333288.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:19 Heat of formation + Delta-G solvation = 15.502817 kcal Electronic energy + Delta-G solvation = -19796.794740 eV Core-core repulsion = 16794.031037 eV Total energy + Delta-G solvation = -3002.763702 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.14277 -38.98006 -38.18013 -35.67041 -33.62782 -32.81510 -31.86389 -29.24869 -27.84596 -25.54318 -24.75449 -24.21648 -22.70425 -21.20192 -19.60845 -19.31583 -18.18165 -17.25287 -16.94011 -16.69179 -16.31689 -15.86569 -15.43937 -15.23937 -15.09902 -14.82696 -14.51523 -14.15324 -13.99063 -13.64341 -13.30043 -13.14266 -13.00308 -12.75873 -12.68337 -12.52907 -12.25806 -12.22977 -11.89616 -11.80823 -11.58292 -11.09137 -10.38547 -9.95508 -9.56352 -9.37753 -8.52797 -8.10735 -5.42640 -0.45880 0.44499 0.92986 1.41960 1.44332 1.52579 1.61254 1.87071 2.14319 2.47355 3.05386 3.49776 3.62380 3.90485 4.17857 4.20708 4.30389 4.32297 4.42352 4.50538 4.58923 4.69488 4.70868 4.78278 4.78573 5.02403 5.09628 5.11385 5.20440 5.23325 5.44780 5.48275 5.61030 5.81144 6.33406 6.45673 6.98306 7.11589 7.73816 8.37447 8.95430 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.024846 B = 0.004982 C = 0.004342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.664817 B = 5618.748541 C = 6447.327105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.202 4.202 3 C -0.166 4.166 4 C -0.054 4.054 5 C -0.309 4.309 6 C 0.581 3.419 7 O -0.581 6.581 8 N -0.599 5.599 9 C 0.085 3.915 10 C 0.136 3.864 11 N -0.610 5.610 12 C -0.300 4.300 13 H 0.069 0.931 14 C -0.002 4.002 15 N -0.893 5.893 16 Si 0.936 3.064 17 H -0.269 1.269 18 H -0.289 1.289 19 H -0.292 1.292 20 C 0.136 3.864 21 C 0.102 3.898 22 S 0.237 5.763 23 H 0.075 0.925 24 H 0.093 0.907 25 H 0.096 0.904 26 H 0.169 0.831 27 H 0.148 0.852 28 H 0.072 0.928 29 H 0.094 0.906 30 H -0.009 1.009 31 H 0.115 0.885 32 H 0.260 0.740 33 H 0.013 0.987 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.150 8.277 9.099 15.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.321 4.321 3 C -0.195 4.195 4 C -0.088 4.088 5 C -0.429 4.429 6 C 0.371 3.629 7 O -0.464 6.464 8 N -0.330 5.330 9 C -0.040 4.040 10 C 0.010 3.990 11 N -0.335 5.335 12 C -0.428 4.428 13 H 0.086 0.914 14 C -0.202 4.202 15 N -0.534 5.534 16 Si 0.762 3.238 17 H -0.194 1.194 18 H -0.215 1.215 19 H -0.218 1.218 20 C 0.010 3.990 21 C -0.021 4.021 22 S 0.505 5.495 23 H 0.094 0.906 24 H 0.111 0.889 25 H 0.115 0.885 26 H 0.186 0.814 27 H 0.165 0.835 28 H 0.090 0.910 29 H 0.111 0.889 30 H 0.009 0.991 31 H 0.133 0.867 32 H 0.071 0.929 33 H 0.031 0.969 34 H 0.098 0.902 35 H 0.107 0.893 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.106 6.992 9.197 15.349 hybrid contribution 1.072 1.053 -0.886 1.744 sum -9.034 8.045 8.311 14.676 Atomic orbital electron populations 1.20533 0.84970 1.04152 1.04684 1.25047 1.03390 0.98181 1.05516 1.20076 0.91387 1.01008 1.07069 1.20904 0.97516 0.94295 0.96068 1.24451 0.96927 0.99353 1.22143 1.17459 0.87285 0.80539 0.77608 1.90718 1.46584 1.59484 1.49585 1.48034 1.14583 1.18886 1.51543 1.22991 0.89771 0.96568 0.94700 1.21856 0.89178 0.96215 0.91762 1.44177 1.07685 1.18865 1.62724 1.19139 1.34058 0.92925 0.96719 0.91367 1.25995 0.96398 0.99755 0.98065 1.69934 1.15288 1.48496 1.19721 0.85764 0.80568 0.77918 0.79521 1.19373 1.21543 1.21817 1.21359 0.92248 0.95267 0.90151 1.22153 0.83720 0.97446 0.98807 1.83345 0.92254 1.07155 1.66722 0.90573 0.88868 0.88546 0.81353 0.83471 0.90975 0.88852 0.99082 0.86735 0.92943 0.96880 0.90175 0.89307 0.90779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.07 10.33 71.24 0.74 -0.33 16 2 C -0.20 -4.08 6.28 24.68 0.15 -3.93 16 3 C -0.17 -3.52 10.00 21.08 0.21 -3.31 16 4 C -0.05 -1.49 10.12 21.72 0.22 -1.27 16 5 C -0.31 -9.94 5.79 24.08 0.14 -9.80 16 6 C 0.58 22.64 7.58 86.42 0.66 23.30 16 7 O -0.58 -25.44 16.39 -4.34 -0.07 -25.51 16 8 N -0.60 -23.35 2.94 -821.98 -2.42 -25.77 16 9 C 0.08 3.25 5.72 86.56 0.50 3.74 16 10 C 0.14 6.44 5.93 86.56 0.51 6.95 16 11 N -0.61 -30.21 2.98 -697.32 -2.08 -32.29 16 12 C -0.30 -15.93 9.35 84.03 0.79 -15.15 16 13 H 0.07 3.58 8.02 -2.91 -0.02 3.56 16 14 C 0.00 -0.10 5.41 84.86 0.46 0.36 16 15 N -0.89 -48.81 10.61 21.65 0.23 -48.58 16 16 Si 0.94 42.25 29.67 68.60 2.04 44.29 16 17 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 18 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 19 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 20 C 0.14 5.80 6.67 86.41 0.58 6.38 16 21 C 0.10 3.90 6.60 86.41 0.57 4.47 16 22 S 0.24 5.98 19.15 -56.49 -1.08 4.90 16 23 H 0.08 0.87 8.11 -2.39 -0.02 0.85 16 24 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.17 2.52 8.06 -2.91 -0.02 2.49 16 27 H 0.15 3.93 8.06 -2.91 -0.02 3.91 16 28 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 29 H 0.09 3.20 3.86 -19.62 -0.08 3.12 16 30 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 31 H 0.12 5.96 5.37 -2.39 -0.01 5.94 16 32 H 0.26 13.59 8.31 -92.71 -0.77 12.82 16 33 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.08 3.18 7.94 -2.39 -0.02 3.16 16 35 H 0.09 3.28 7.00 -2.38 -0.02 3.27 16 36 H 0.07 2.66 8.14 -2.39 -0.02 2.65 16 Total: -1.00 -64.24 306.40 3.15 -61.09 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: 1.02 Total: 10.45 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: 5.51 Total: 11.42 kcal Atomic # 7 Polarization: -102.37 SS G_CDS: -4.27 Total: -106.64 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -0.07 Total: -25.51 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.04 Total: 44.29 kcal Atomic # 16 Polarization: 5.98 SS G_CDS: -1.08 Total: 4.90 kcal Total: -64.24 3.15 -61.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049333288.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.589 kcal (2) G-P(sol) polarization free energy of solvation -64.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds