Wall clock time and date at job start Tue Mar 31 2020 01:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.50699 * 109.47078 * 240.00010 * 2 1 3 6 6 N 1.29360 * 124.66823 * 59.70238 * 5 2 1 7 7 C 1.30949 * 117.49743 * 179.76523 * 6 5 2 8 8 C 1.37149 * 113.83555 * 0.51584 * 7 6 5 9 9 C 1.41647 * 126.19671 * 179.69566 * 8 7 6 10 10 C 1.35716 * 119.99603 * 0.04162 * 9 8 7 11 11 C 1.41347 * 119.99350 * 179.97438 * 10 9 8 12 12 O 1.21842 * 120.00532 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99711 * 179.97438 * 11 10 9 14 14 C 1.36776 * 120.00014 * 179.97438 * 13 11 10 15 15 H 1.08003 * 119.99564 * 0.02562 * 14 13 11 16 16 C 1.39056 * 119.99958 * 179.97438 * 14 13 11 17 17 N 1.31366 * 120.00067 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99986 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46971 * 89.99869 * 18 16 14 20 20 H 1.48496 * 109.47158 * 209.99827 * 18 16 14 21 21 H 1.48501 * 109.47110 * 330.00238 * 18 16 14 22 22 S 1.70919 * 124.66916 * 240.00247 * 5 2 1 23 23 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 24 24 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 25 25 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 27 27 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 29 29 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 30 30 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 31 31 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 32 32 H 1.08007 * 123.08374 * 180.22095 * 7 6 5 33 33 H 1.07995 * 119.99887 * 180.02562 * 9 8 7 34 34 H 1.07994 * 120.00513 * 0.02562 * 10 9 8 35 35 H 0.96999 * 120.00425 * 0.02562 * 13 11 10 36 36 H 0.97002 * 120.00211 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 2.0323 -0.7104 -1.2305 6 7 1.7715 -0.3512 -2.4455 7 6 2.2862 -1.0694 -3.4120 8 6 3.0366 -2.1308 -2.9746 9 6 3.7042 -3.0762 -3.7912 10 6 3.6332 -2.9755 -5.1428 11 6 4.2998 -3.9186 -5.9576 12 8 4.9386 -4.8217 -5.4467 13 7 4.2289 -3.8190 -7.2998 14 6 4.8744 -4.7313 -8.0884 15 1 5.4406 -5.5317 -7.6354 16 6 4.8008 -4.6288 -9.4732 17 7 4.1117 -3.6555 -10.0241 18 14 5.6830 -5.8744 -10.5502 19 1 4.7745 -7.0141 -10.8347 20 1 6.0831 -5.2297 -11.8266 21 1 6.8926 -6.3696 -9.8452 22 16 3.0190 -2.1059 -1.2127 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.6768 1.9562 0.8900 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 -1.7489 1.2492 30 1 3.1300 -0.7217 1.2490 31 1 1.6767 -0.2075 2.1393 32 1 2.1300 -0.8490 -4.4577 33 1 4.2699 -3.8769 -3.3383 34 1 3.0680 -2.1744 -5.5957 35 1 3.7207 -3.0999 -7.7067 36 1 4.0600 -3.5842 -10.9901 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079860712.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:40 Heat of formation + Delta-G solvation = -16.714208 kcal Electronic energy + Delta-G solvation = -18400.781987 eV Core-core repulsion = 15396.621250 eV Total energy + Delta-G solvation = -3004.160737 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.98897 -40.30592 -37.82473 -36.25705 -34.93289 -33.40461 -29.96616 -28.31889 -28.15712 -27.63388 -26.45356 -23.90037 -22.20833 -20.78560 -20.08128 -19.31653 -18.68887 -17.70417 -16.71989 -16.55001 -15.94178 -15.75006 -15.45372 -15.43852 -15.18156 -14.76241 -14.62742 -14.17543 -13.55751 -13.45481 -13.13568 -13.03655 -12.99453 -12.59473 -12.53759 -12.48826 -12.14559 -12.11964 -12.09555 -11.86606 -11.69169 -11.49902 -10.60027 -10.53808 -10.15993 -10.10203 -9.16471 -8.59844 -5.99485 -0.96959 0.27641 0.71463 0.75212 1.40419 1.42179 1.54021 1.87850 2.25786 2.51934 3.02995 3.26261 3.30974 3.75241 3.95204 3.96985 3.99351 4.16437 4.29554 4.38460 4.67124 4.72267 4.76043 4.86739 4.97676 4.98498 5.00736 5.11798 5.20165 5.28055 5.29887 5.35613 5.38269 5.42439 5.93190 6.48954 6.70578 7.00787 7.42012 8.02041 8.56843 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.049363 B = 0.002908 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.085018 B = 9624.871713 C =10000.900805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.007 3.993 3 C -0.131 4.131 4 C -0.155 4.155 5 C 0.046 3.954 6 N -0.487 5.487 7 C 0.055 3.945 8 C -0.227 4.227 9 C -0.020 4.020 10 C -0.166 4.166 11 C 0.450 3.550 12 O -0.652 6.652 13 N -0.548 5.548 14 C -0.332 4.332 15 H 0.085 0.915 16 C -0.010 4.010 17 N -0.906 5.906 18 Si 0.999 3.001 19 H -0.268 1.268 20 H -0.267 1.267 21 H -0.271 1.271 22 S 0.182 5.818 23 H 0.052 0.948 24 H 0.090 0.910 25 H 0.052 0.948 26 H 0.090 0.910 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.098 0.902 32 H 0.188 0.812 33 H 0.121 0.879 34 H 0.143 0.857 35 H 0.399 0.601 36 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.229 10.242 20.167 23.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.003 3.997 3 C -0.190 4.190 4 C -0.213 4.213 5 C -0.228 4.228 6 N -0.200 5.200 7 C -0.101 4.101 8 C -0.348 4.348 9 C -0.044 4.044 10 C -0.191 4.191 11 C 0.243 3.757 12 O -0.544 6.544 13 N -0.180 5.180 14 C -0.462 4.462 15 H 0.102 0.898 16 C -0.212 4.212 17 N -0.545 5.545 18 Si 0.822 3.178 19 H -0.193 1.193 20 H -0.191 1.191 21 H -0.195 1.195 22 S 0.444 5.556 23 H 0.071 0.929 24 H 0.108 0.892 25 H 0.071 0.929 26 H 0.108 0.892 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.117 0.883 32 H 0.205 0.795 33 H 0.138 0.862 34 H 0.161 0.839 35 H 0.234 0.766 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.755 9.566 21.018 24.061 hybrid contribution 0.112 -0.169 -2.247 2.256 sum -6.643 9.398 18.771 22.019 Atomic orbital electron populations 1.21834 0.91594 1.02322 1.03240 1.19477 0.97093 0.95490 0.87659 1.21831 1.00966 0.92956 1.03241 1.22070 1.01802 1.00816 0.96577 1.27903 0.99855 0.97831 0.97244 1.65922 1.23946 1.31062 0.99105 1.22801 0.95698 0.91100 1.00505 1.23827 1.09322 1.03493 0.98109 1.20095 0.95951 0.95866 0.92472 1.21954 1.02568 1.00402 0.94197 1.17249 0.86978 0.88590 0.82885 1.90625 1.49820 1.39790 1.74205 1.42003 1.44052 1.26792 1.05190 1.19825 1.28904 1.08662 0.88806 0.89752 1.26233 0.97553 0.99563 0.97849 1.69645 1.39805 1.31812 1.13259 0.84835 0.78353 0.77521 0.77111 1.19270 1.19101 1.19518 1.83663 1.46128 1.25735 1.00118 0.92929 0.89154 0.92862 0.89157 0.92845 0.92929 0.91794 0.91785 0.88288 0.79494 0.86153 0.83934 0.76638 0.90643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.83 8.45 71.98 0.61 -1.22 16 2 C 0.01 0.10 0.99 -52.93 -0.05 0.05 16 3 C -0.13 -1.83 8.45 71.98 0.61 -1.22 16 4 C -0.15 -1.70 7.53 71.98 0.54 -1.16 16 5 C 0.05 1.03 5.77 88.47 0.51 1.54 16 6 N -0.49 -13.06 10.47 -189.23 -1.98 -15.04 16 7 C 0.05 1.54 10.84 84.57 0.92 2.46 16 8 C -0.23 -6.71 6.32 22.86 0.14 -6.57 16 9 C -0.02 -0.70 9.49 22.53 0.21 -0.49 16 10 C -0.17 -6.53 9.26 22.45 0.21 -6.32 16 11 C 0.45 22.93 7.50 85.01 0.64 23.57 16 12 O -0.65 -38.18 15.68 -4.80 -0.08 -38.25 16 13 N -0.55 -29.10 5.26 -315.32 -1.66 -30.76 16 14 C -0.33 -19.03 9.67 84.12 0.81 -18.21 16 15 H 0.08 5.13 7.15 -2.91 -0.02 5.11 16 16 C -0.01 -0.54 5.50 84.96 0.47 -0.07 16 17 N -0.91 -48.29 13.05 21.68 0.28 -48.01 16 18 Si 1.00 42.17 29.55 68.60 2.03 44.19 16 19 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 20 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 21 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 22 S 0.18 4.21 21.50 -56.49 -1.21 2.99 16 23 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 26 H 0.09 0.79 8.14 -2.39 -0.02 0.78 16 27 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.06 0.72 7.91 -2.39 -0.02 0.70 16 30 H 0.06 0.72 7.91 -2.39 -0.02 0.70 16 31 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.19 4.75 6.89 -2.91 -0.02 4.73 16 33 H 0.12 4.59 7.45 -2.91 -0.02 4.57 16 34 H 0.14 4.65 6.62 -2.91 -0.02 4.63 16 35 H 0.40 19.95 7.85 -92.71 -0.73 19.22 16 36 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 Total: -1.00 -68.36 323.68 3.36 -64.99 By element: Atomic # 1 Polarization: 27.16 SS G_CDS: 0.37 Total: 27.52 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: 5.62 Total: -7.64 kcal Atomic # 7 Polarization: -90.45 SS G_CDS: -3.36 Total: -93.81 kcal Atomic # 8 Polarization: -38.18 SS G_CDS: -0.08 Total: -38.25 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.19 kcal Atomic # 16 Polarization: 4.21 SS G_CDS: -1.21 Total: 2.99 kcal Total: -68.36 3.36 -64.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079860712.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.280 kcal (2) G-P(sol) polarization free energy of solvation -68.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds