Wall clock time and date at job start Tue Mar 31 2020 02:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47222 * 2 1 4 4 N 1.46505 * 109.46925 * 180.02562 * 3 2 1 5 5 C 1.36773 * 119.99644 * 264.55415 * 4 3 2 6 6 H 1.08005 * 119.99562 * 143.12200 * 5 4 3 7 7 C 1.39053 * 120.00340 * 323.12833 * 5 4 3 8 8 N 1.31370 * 120.00346 * 160.14874 * 7 5 4 9 9 Si 1.86808 * 119.99805 * 340.14592 * 7 5 4 10 10 H 1.48501 * 109.47000 * 95.36390 * 9 7 5 11 11 H 1.48505 * 109.46786 * 215.36407 * 9 7 5 12 12 H 1.48498 * 109.47017 * 335.36035 * 9 7 5 13 13 C 1.34771 * 120.00002 * 84.56186 * 4 3 2 14 14 O 1.21835 * 120.00392 * 5.04887 * 13 4 3 15 15 C 1.41349 * 119.99708 * 185.05315 * 13 4 3 16 16 C 1.35713 * 120.00031 * 175.27891 * 15 13 4 17 17 C 1.41650 * 120.00173 * 179.97438 * 16 15 13 18 18 C 1.37153 * 126.19399 * 179.71378 * 17 16 15 19 19 N 1.30945 * 113.82636 * 179.78741 * 18 17 16 20 20 C 1.29356 * 117.50064 * 0.52325 * 19 18 17 21 21 C 1.50709 * 124.66573 * 179.72551 * 20 19 18 22 22 S 1.70906 * 110.66591 * 359.70898 * 20 19 18 23 23 H 1.09002 * 109.46728 * 60.00007 * 1 2 3 24 24 H 1.08995 * 109.46867 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46865 * 300.00038 * 1 2 3 26 26 H 1.09000 * 109.47375 * 239.99852 * 2 1 3 27 27 H 1.09002 * 109.47395 * 120.00339 * 2 1 3 28 28 H 1.08999 * 109.47231 * 60.00186 * 3 2 1 29 29 H 1.08996 * 109.46842 * 299.99637 * 3 2 1 30 30 H 0.96995 * 120.00083 * 179.97438 * 8 7 5 31 31 H 1.07997 * 120.00442 * 355.28056 * 15 13 4 32 32 H 1.08004 * 119.99844 * 359.97438 * 16 15 13 33 33 H 1.07995 * 123.08138 * 359.97438 * 18 17 16 34 34 H 1.09004 * 109.46974 * 269.98060 * 21 20 19 35 35 H 1.08996 * 109.46829 * 29.98157 * 21 20 19 36 36 H 1.08997 * 109.46887 * 149.98124 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1894 1.5546 1.1783 6 1 5.1074 1.0047 1.3242 7 6 3.7032 2.3767 2.1890 8 7 4.1070 2.2044 3.4271 9 14 2.4757 3.7260 1.7860 10 1 1.0970 3.2282 2.0241 11 1 2.7332 4.9042 2.6526 12 1 2.6213 4.1182 0.3612 13 6 4.1784 1.3320 -1.1628 14 8 3.5724 1.3248 -2.2197 15 6 5.5878 1.2243 -1.1555 16 6 6.2586 1.0170 -2.3169 17 6 7.6710 0.9096 -2.3097 18 6 8.4726 0.6959 -3.4019 19 7 9.7498 0.6420 -3.1182 20 6 10.0928 0.7816 -1.8788 21 6 11.5116 0.7411 -1.3722 22 16 8.7156 1.0189 -0.8949 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.6767 1.9564 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.7681 2.7781 4.1320 31 1 6.1309 1.3071 -0.2257 32 1 5.7154 0.9338 -3.2467 33 1 8.0860 0.5855 -4.4042 34 1 11.7760 -0.2843 -1.1138 35 1 12.1849 1.1055 -2.1480 36 1 11.5999 1.3728 -0.4883 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112276828.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:03:58 Heat of formation + Delta-G solvation = 26.303922 kcal Electronic energy + Delta-G solvation = -19106.904684 eV Core-core repulsion = 16104.609353 eV Total energy + Delta-G solvation = -3002.295331 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.51575 -39.12218 -35.67441 -34.07455 -33.09695 -31.81089 -31.21689 -28.12532 -26.06126 -25.09164 -23.95956 -22.13137 -21.00223 -19.36161 -19.03066 -17.75752 -16.69941 -16.42276 -15.53560 -14.97642 -14.85818 -14.37225 -14.09662 -13.92140 -13.63802 -13.29208 -13.08890 -12.79598 -12.59358 -12.52193 -12.28048 -11.85629 -11.65926 -11.60349 -11.07586 -10.95105 -10.91593 -10.49663 -10.35261 -10.11613 -9.84634 -9.57415 -9.32910 -8.94937 -8.73990 -8.00789 -7.71319 -6.65383 -4.18066 0.28664 1.45904 1.89887 2.11768 2.96125 3.09596 3.15595 3.21524 3.98318 4.22875 4.24123 4.34271 4.86205 5.06116 5.33773 5.36075 5.42600 5.46259 5.52147 5.57862 5.75485 5.77934 5.81593 5.96971 6.18749 6.28422 6.30183 6.36501 6.37920 6.66788 6.72146 6.81795 6.89370 7.22913 7.84200 7.90234 8.08317 8.78040 9.19501 9.56057 10.43901 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.021036 B = 0.004785 C = 0.004185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.702200 B = 5850.070908 C = 6689.143019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.131 4.131 3 C 0.099 3.901 4 N -0.445 5.445 5 C -0.342 4.342 6 H 0.108 0.892 7 C 0.067 3.933 8 N -0.849 5.849 9 Si 0.879 3.121 10 H -0.271 1.271 11 H -0.286 1.286 12 H -0.260 1.260 13 C 0.494 3.506 14 O -0.606 6.606 15 C -0.136 4.136 16 C -0.057 4.057 17 C -0.181 4.181 18 C 0.039 3.961 19 N -0.474 5.474 20 C 0.010 3.990 21 C -0.074 4.074 22 S 0.162 5.838 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.278 0.722 31 H 0.131 0.869 32 H 0.143 0.857 33 H 0.178 0.822 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.454 -2.177 -4.849 8.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.170 4.170 3 C -0.024 4.024 4 N -0.163 5.163 5 C -0.470 4.470 6 H 0.126 0.874 7 C -0.142 4.142 8 N -0.483 5.483 9 Si 0.706 3.294 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.184 1.184 13 C 0.288 3.712 14 O -0.494 6.494 15 C -0.160 4.160 16 C -0.080 4.080 17 C -0.303 4.303 18 C -0.116 4.116 19 N -0.188 5.188 20 C -0.264 4.264 21 C -0.134 4.134 22 S 0.419 5.581 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.148 0.852 32 H 0.161 0.839 33 H 0.195 0.805 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.485 -2.041 -4.369 8.081 hybrid contribution -1.008 0.633 -0.674 1.368 sum 5.477 -1.407 -5.043 7.577 Atomic orbital electron populations 1.21705 0.96155 1.01193 1.01462 1.21762 0.95010 0.97604 1.02584 1.21710 0.82347 0.97019 1.01321 1.43772 1.04367 1.61795 1.06331 1.19157 1.09979 1.27712 0.90123 0.87417 1.25382 0.97227 0.96973 0.94598 1.69714 1.42467 1.36612 0.99480 0.86898 0.80761 0.81810 0.79892 1.19827 1.21247 1.18351 1.16845 0.87907 0.82837 0.83639 1.90696 1.70685 1.57394 1.30633 1.22442 0.95922 0.99478 0.98158 1.20387 0.88725 0.99155 0.99753 1.24042 0.99066 1.11374 0.95769 1.22434 0.86506 1.03001 0.99671 1.65920 1.18351 1.16273 1.18232 1.27084 1.01678 1.05494 0.92126 1.20381 0.88090 1.03423 1.01507 1.84241 0.97886 1.64890 1.11075 0.92916 0.92893 0.92968 0.91837 0.91292 0.91453 0.91187 0.91115 0.85179 0.83914 0.80498 0.89912 0.89660 0.90243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.91 37.16 0.37 -1.91 16 2 C -0.13 -2.51 6.22 -26.73 -0.17 -2.67 16 3 C 0.10 2.17 3.97 -4.04 -0.02 2.15 16 4 N -0.45 -10.65 2.21 -118.14 -0.26 -10.91 16 5 C -0.34 -8.64 8.99 -15.05 -0.14 -8.77 16 6 H 0.11 2.80 6.75 -52.48 -0.35 2.45 16 7 C 0.07 1.71 5.32 -17.45 -0.09 1.62 16 8 N -0.85 -22.38 13.95 55.50 0.77 -21.61 16 9 Si 0.88 19.98 24.83 -169.99 -4.22 15.76 16 10 H -0.27 -5.88 6.70 56.52 0.38 -5.50 16 11 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.26 -6.08 7.11 56.52 0.40 -5.68 16 13 C 0.49 11.60 7.35 -15.08 -0.11 11.49 16 14 O -0.61 -15.12 15.76 5.07 0.08 -15.05 16 15 C -0.14 -2.79 8.64 -39.30 -0.34 -3.13 16 16 C -0.06 -1.01 9.39 -39.18 -0.37 -1.38 16 17 C -0.18 -2.89 6.26 -38.67 -0.24 -3.14 16 18 C 0.04 0.58 11.39 -18.32 -0.21 0.37 16 19 N -0.47 -7.08 10.50 -11.16 -0.12 -7.20 16 20 C 0.01 0.13 7.37 -13.32 -0.10 0.04 16 21 C -0.07 -0.68 10.46 36.01 0.38 -0.31 16 22 S 0.16 2.35 21.92 -107.50 -2.36 -0.01 16 23 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 27 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 28 H 0.07 1.50 3.27 -51.93 -0.17 1.33 16 29 H 0.07 1.54 7.52 -51.93 -0.39 1.15 16 30 H 0.28 6.85 8.31 -40.82 -0.34 6.51 16 31 H 0.13 2.66 5.37 -52.49 -0.28 2.38 16 32 H 0.14 2.50 7.46 -52.48 -0.39 2.11 16 33 H 0.18 2.16 8.06 -52.49 -0.42 1.74 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 317.23 15.07 4.78 4.78 Total: -1.00 -29.04 317.23 -6.90 -35.94 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -4.55 Total: 3.94 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: -1.03 Total: -5.64 kcal Atomic # 7 Polarization: -40.12 SS G_CDS: 0.40 Total: -39.72 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: 0.08 Total: -15.05 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -4.22 Total: 15.76 kcal Atomic # 16 Polarization: 2.35 SS G_CDS: -2.36 Total: -0.01 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.04 -6.90 -35.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112276828.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.244 kcal (2) G-P(sol) polarization free energy of solvation -29.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds