Wall clock time and date at job start Tue Mar 31 2020 02:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47222 * 2 1 4 4 N 1.46505 * 109.46925 * 180.02562 * 3 2 1 5 5 C 1.36773 * 119.99644 * 264.55415 * 4 3 2 6 6 H 1.08005 * 119.99562 * 143.12200 * 5 4 3 7 7 C 1.39053 * 120.00340 * 323.12833 * 5 4 3 8 8 N 1.31370 * 120.00346 * 160.14874 * 7 5 4 9 9 Si 1.86808 * 119.99805 * 340.14592 * 7 5 4 10 10 H 1.48501 * 109.47000 * 95.36390 * 9 7 5 11 11 H 1.48505 * 109.46786 * 215.36407 * 9 7 5 12 12 H 1.48498 * 109.47017 * 335.36035 * 9 7 5 13 13 C 1.34771 * 120.00002 * 84.56186 * 4 3 2 14 14 O 1.21835 * 120.00392 * 5.04887 * 13 4 3 15 15 C 1.41349 * 119.99708 * 185.05315 * 13 4 3 16 16 C 1.35713 * 120.00031 * 175.27891 * 15 13 4 17 17 C 1.41650 * 120.00173 * 179.97438 * 16 15 13 18 18 C 1.37153 * 126.19399 * 179.71378 * 17 16 15 19 19 N 1.30945 * 113.82636 * 179.78741 * 18 17 16 20 20 C 1.29356 * 117.50064 * 0.52325 * 19 18 17 21 21 C 1.50709 * 124.66573 * 179.72551 * 20 19 18 22 22 S 1.70906 * 110.66591 * 359.70898 * 20 19 18 23 23 H 1.09002 * 109.46728 * 60.00007 * 1 2 3 24 24 H 1.08995 * 109.46867 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46865 * 300.00038 * 1 2 3 26 26 H 1.09000 * 109.47375 * 239.99852 * 2 1 3 27 27 H 1.09002 * 109.47395 * 120.00339 * 2 1 3 28 28 H 1.08999 * 109.47231 * 60.00186 * 3 2 1 29 29 H 1.08996 * 109.46842 * 299.99637 * 3 2 1 30 30 H 0.96995 * 120.00083 * 179.97438 * 8 7 5 31 31 H 1.07997 * 120.00442 * 355.28056 * 15 13 4 32 32 H 1.08004 * 119.99844 * 359.97438 * 16 15 13 33 33 H 1.07995 * 123.08138 * 359.97438 * 18 17 16 34 34 H 1.09004 * 109.46974 * 269.98060 * 21 20 19 35 35 H 1.08996 * 109.46829 * 29.98157 * 21 20 19 36 36 H 1.08997 * 109.46887 * 149.98124 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1894 1.5546 1.1783 6 1 5.1074 1.0047 1.3242 7 6 3.7032 2.3767 2.1890 8 7 4.1070 2.2044 3.4271 9 14 2.4757 3.7260 1.7860 10 1 1.0970 3.2282 2.0241 11 1 2.7332 4.9042 2.6526 12 1 2.6213 4.1182 0.3612 13 6 4.1784 1.3320 -1.1628 14 8 3.5724 1.3248 -2.2197 15 6 5.5878 1.2243 -1.1555 16 6 6.2586 1.0170 -2.3169 17 6 7.6710 0.9096 -2.3097 18 6 8.4726 0.6959 -3.4019 19 7 9.7498 0.6420 -3.1182 20 6 10.0928 0.7816 -1.8788 21 6 11.5116 0.7411 -1.3722 22 16 8.7156 1.0189 -0.8949 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.6767 1.9564 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.7681 2.7781 4.1320 31 1 6.1309 1.3071 -0.2257 32 1 5.7154 0.9338 -3.2467 33 1 8.0860 0.5855 -4.4042 34 1 11.7760 -0.2843 -1.1138 35 1 12.1849 1.1055 -2.1480 36 1 11.5999 1.3728 -0.4883 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112276828.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:03:57 Heat of formation + Delta-G solvation = 9.154151 kcal Electronic energy + Delta-G solvation = -19107.648354 eV Core-core repulsion = 16104.609353 eV Total energy + Delta-G solvation = -3003.039001 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.02876 -40.58787 -37.40528 -35.56728 -34.72426 -33.59159 -32.31704 -29.43712 -27.59625 -26.85524 -25.14567 -23.56225 -22.53522 -20.81318 -20.57717 -19.23021 -18.30958 -18.03649 -17.25150 -16.42889 -16.10774 -15.92750 -15.67750 -15.52955 -14.88236 -14.78301 -14.44702 -14.26597 -14.16912 -13.61048 -13.45188 -13.34111 -13.13953 -13.02396 -12.60038 -12.53655 -12.28642 -12.08209 -11.90924 -11.69063 -11.56772 -11.15727 -10.79013 -10.52346 -10.14575 -9.82189 -9.12152 -8.57510 -6.15044 -0.99469 0.28591 0.71468 0.73349 1.16772 1.29860 1.39320 1.84510 2.12524 2.46585 2.63927 3.00695 3.22180 3.89029 3.99731 4.08728 4.12287 4.16202 4.28739 4.35317 4.51061 4.56135 4.64034 4.68328 4.73566 4.91020 5.01165 5.08129 5.17464 5.19242 5.25765 5.27642 5.36926 5.48637 5.97875 6.20030 6.65424 6.87605 7.33705 7.71992 8.55842 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.021036 B = 0.004785 C = 0.004185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.702200 B = 5850.070908 C = 6689.143019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.125 4.125 3 C 0.093 3.907 4 N -0.463 5.463 5 C -0.344 4.344 6 H 0.087 0.913 7 C 0.033 3.967 8 N -0.887 5.887 9 Si 0.924 3.076 10 H -0.252 1.252 11 H -0.281 1.281 12 H -0.273 1.273 13 C 0.499 3.501 14 O -0.626 6.626 15 C -0.193 4.193 16 C 0.000 4.000 17 C -0.233 4.233 18 C 0.073 3.927 19 N -0.499 5.499 20 C 0.041 3.959 21 C -0.080 4.080 22 S 0.155 5.845 23 H 0.061 0.939 24 H 0.075 0.925 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.283 0.717 31 H 0.124 0.876 32 H 0.147 0.853 33 H 0.204 0.796 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.670 -2.399 -6.152 10.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.163 4.163 3 C -0.029 4.029 4 N -0.181 5.181 5 C -0.472 4.472 6 H 0.105 0.895 7 C -0.172 4.172 8 N -0.523 5.523 9 Si 0.750 3.250 10 H -0.178 1.178 11 H -0.207 1.207 12 H -0.198 1.198 13 C 0.294 3.706 14 O -0.516 6.516 15 C -0.216 4.216 16 C -0.023 4.023 17 C -0.354 4.354 18 C -0.083 4.083 19 N -0.213 5.213 20 C -0.233 4.233 21 C -0.140 4.140 22 S 0.413 5.587 23 H 0.080 0.920 24 H 0.094 0.906 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.142 0.858 32 H 0.165 0.835 33 H 0.220 0.780 34 H 0.122 0.878 35 H 0.117 0.883 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 7.686 -2.266 -5.650 9.805 hybrid contribution -0.969 0.603 -0.533 1.260 sum 6.718 -1.663 -6.183 9.280 Atomic orbital electron populations 1.21681 0.93049 1.03009 1.02150 1.21701 0.97679 0.95491 1.01462 1.21834 0.81519 0.98736 1.00815 1.43814 1.05113 1.63202 1.05965 1.18970 1.09779 1.27719 0.90693 0.89550 1.25836 0.98778 0.98209 0.94375 1.69765 1.44469 1.37921 1.00155 0.86183 0.80247 0.79903 0.78661 1.17798 1.20718 1.19836 1.17262 0.89003 0.81200 0.83179 1.90651 1.71532 1.58286 1.31165 1.22136 0.94526 1.05813 0.99111 1.20473 0.89702 0.93383 0.98709 1.23923 0.98432 1.16006 0.97039 1.22943 0.86354 0.98673 1.00334 1.66107 1.18182 1.18223 1.18798 1.27987 1.02976 1.00847 0.91463 1.20686 0.85357 1.05278 1.02638 1.84410 0.98426 1.64671 1.11191 0.92017 0.90556 0.92469 0.92820 0.92463 0.91785 0.91570 0.90731 0.85840 0.83524 0.77988 0.87804 0.88258 0.88310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.16 9.91 71.98 0.71 -3.45 16 2 C -0.12 -4.80 6.22 30.60 0.19 -4.61 16 3 C 0.09 4.16 3.97 86.38 0.34 4.50 16 4 N -0.46 -22.88 2.21 -645.84 -1.42 -24.31 16 5 C -0.34 -18.11 8.99 84.12 0.76 -17.35 16 6 H 0.09 4.79 6.75 -2.91 -0.02 4.77 16 7 C 0.03 1.75 5.32 84.96 0.45 2.20 16 8 N -0.89 -48.12 13.95 21.68 0.30 -47.81 16 9 Si 0.92 41.64 24.83 68.60 1.70 43.35 16 10 H -0.25 -10.48 6.70 99.48 0.67 -9.82 16 11 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 12 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 13 C 0.50 24.16 7.35 85.01 0.62 24.78 16 14 O -0.63 -31.81 15.76 -4.78 -0.08 -31.88 16 15 C -0.19 -8.16 8.64 22.45 0.19 -7.96 16 16 C 0.00 0.01 9.39 22.53 0.21 0.22 16 17 C -0.23 -7.14 6.26 22.86 0.14 -7.00 16 18 C 0.07 1.96 11.39 84.57 0.96 2.92 16 19 N -0.50 -13.33 10.50 -189.24 -1.99 -15.32 16 20 C 0.04 0.97 7.37 88.48 0.65 1.62 16 21 C -0.08 -1.16 10.46 71.24 0.74 -0.41 16 22 S 0.16 4.32 21.92 -56.49 -1.24 3.08 16 23 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.06 1.62 8.14 -2.39 -0.02 1.61 16 26 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.06 2.85 3.27 -2.39 -0.01 2.85 16 29 H 0.07 2.94 7.52 -2.39 -0.02 2.92 16 30 H 0.28 14.21 8.31 -92.71 -0.77 13.44 16 31 H 0.12 5.33 5.37 -2.91 -0.02 5.32 16 32 H 0.15 5.01 7.46 -2.91 -0.02 4.99 16 33 H 0.20 4.22 8.06 -2.91 -0.02 4.20 16 34 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -63.68 317.23 4.32 -59.36 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: 1.05 Total: 18.06 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: 5.99 Total: -4.52 kcal Atomic # 7 Polarization: -84.33 SS G_CDS: -3.11 Total: -87.44 kcal Atomic # 8 Polarization: -31.81 SS G_CDS: -0.08 Total: -31.88 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 1.70 Total: 43.35 kcal Atomic # 16 Polarization: 4.32 SS G_CDS: -1.24 Total: 3.08 kcal Total: -63.68 4.32 -59.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112276828.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.514 kcal (2) G-P(sol) polarization free energy of solvation -63.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds