Wall clock time and date at job start Tue Mar 31 2020 01:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29356 * 124.67090 * 2 1 4 4 C 1.30957 * 117.48976 * 179.74725 * 3 2 1 5 5 C 1.37067 * 113.85166 * 0.45086 * 4 3 2 6 6 C 1.41720 * 126.19498 * 179.85453 * 5 4 3 7 7 C 1.35565 * 120.00016 * 179.71432 * 6 5 4 8 8 C 1.41545 * 120.00042 * 179.97438 * 7 6 5 9 9 O 1.21783 * 120.00037 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00192 * 179.97438 * 8 7 6 11 11 C 1.46506 * 119.99969 * 0.02562 * 10 8 7 12 12 C 1.46499 * 120.00036 * 179.72750 * 10 8 7 13 13 H 1.08998 * 109.47061 * 0.27944 * 12 10 8 14 14 C 1.53002 * 109.47216 * 120.28122 * 12 10 8 15 15 C 1.50702 * 109.46950 * 240.27755 * 12 10 8 16 16 H 1.07994 * 120.00187 * 0.02562 * 15 12 10 17 17 C 1.37879 * 120.00033 * 180.02562 * 15 12 10 18 18 N 1.31522 * 119.99787 * 0.02562 * 17 15 12 19 19 Si 1.86795 * 120.00370 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.47212 * 0.02562 * 19 17 15 21 21 H 1.48510 * 109.46951 * 119.99547 * 19 17 15 22 22 H 1.48494 * 109.47536 * 239.99850 * 19 17 15 23 23 S 1.70909 * 124.67636 * 179.97438 * 2 1 3 24 24 H 1.09000 * 109.47024 * 270.00193 * 1 2 3 25 25 H 1.09000 * 109.47416 * 29.99999 * 1 2 3 26 26 H 1.09005 * 109.46854 * 150.00276 * 1 2 3 27 27 H 1.08001 * 123.07747 * 180.30382 * 4 3 2 28 28 H 1.08001 * 120.00238 * 359.71080 * 6 5 4 29 29 H 1.08001 * 119.99749 * 0.02562 * 7 6 5 30 30 H 1.08999 * 109.46892 * 269.72362 * 11 10 8 31 31 H 1.09000 * 109.46803 * 29.71536 * 11 10 8 32 32 H 1.09000 * 109.47214 * 149.72329 * 11 10 8 33 33 H 1.08996 * 109.47401 * 180.02562 * 14 12 10 34 34 H 1.09002 * 109.46768 * 300.00122 * 14 12 10 35 35 H 1.08996 * 109.46989 * 59.99467 * 14 12 10 36 36 H 0.97000 * 119.99632 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2429 1.0639 0.0000 4 6 3.5421 0.9002 0.0051 5 6 3.9354 -0.4129 0.0000 6 6 5.2711 -0.8865 0.0007 7 6 5.5176 -2.2195 0.0010 8 6 6.8517 -2.6926 0.0012 9 8 7.7780 -1.9021 0.0016 10 7 7.0968 -4.0178 0.0020 11 6 5.9824 -4.9689 0.0022 12 6 8.4775 -4.5074 -0.0038 13 1 9.1634 -3.6602 -0.0033 14 6 8.7211 -5.3615 1.2420 15 6 8.7097 -5.3411 -1.2376 16 1 7.9090 -5.4908 -1.9466 17 6 9.9444 -5.9126 -1.4612 18 7 10.9193 -5.7306 -0.5974 19 14 10.2320 -6.9465 -2.9900 20 1 8.9852 -6.9973 -3.7951 21 1 11.3192 -6.3404 -3.8001 22 1 10.6205 -8.3230 -2.5909 23 16 2.4794 -1.4055 0.0006 24 1 -0.3633 0.0000 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3633 -0.8901 -0.5138 27 1 4.2401 1.7244 0.0104 28 1 6.0927 -0.1855 0.0010 29 1 4.6960 -2.9206 0.0003 30 1 5.7089 -5.2079 1.0299 31 1 5.1268 -4.5261 -0.5078 32 1 6.2823 -5.8801 -0.5153 33 1 9.7485 -5.7254 1.2380 34 1 8.5531 -4.7586 2.1344 35 1 8.0352 -6.2086 1.2416 36 1 11.7881 -6.1323 -0.7549 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112289225.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:27 Heat of formation + Delta-G solvation = 26.580535 kcal Electronic energy + Delta-G solvation = -18842.435792 eV Core-core repulsion = 15840.152456 eV Total energy + Delta-G solvation = -3002.283336 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.88316 -39.26706 -35.57457 -34.47727 -32.87682 -31.63585 -29.67727 -27.93570 -26.14129 -25.23324 -24.56168 -23.02254 -20.51881 -19.75513 -18.52214 -17.44795 -16.96442 -16.33721 -15.47342 -15.20272 -15.03260 -14.43648 -14.35862 -14.12602 -13.53349 -13.11690 -13.07184 -12.67628 -12.52283 -12.45277 -12.27372 -11.65941 -11.53386 -11.19826 -11.05982 -10.87282 -10.75840 -10.67150 -10.25099 -10.17785 -9.91949 -9.32963 -9.19737 -9.03753 -8.43486 -8.25905 -7.55545 -6.07820 -4.15903 -0.09689 1.06337 1.49277 1.76140 2.76485 3.25491 3.33529 3.36435 3.89602 3.97093 4.04562 4.39888 4.73444 4.92145 5.02737 5.08145 5.12027 5.14010 5.23377 5.49341 5.58737 5.75867 5.95467 6.01530 6.20862 6.27754 6.38668 6.76208 6.84696 7.06779 7.42578 7.48718 7.54243 7.71283 8.01668 8.19372 8.51072 8.82231 9.02966 9.50534 10.97507 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.034007 B = 0.003420 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.161380 B = 8184.321526 C = 8373.528703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.030 3.970 3 N -0.475 5.475 4 C 0.064 3.936 5 C -0.203 4.203 6 C -0.011 4.011 7 C -0.186 4.186 8 C 0.532 3.468 9 O -0.557 6.557 10 N -0.585 5.585 11 C 0.081 3.919 12 C 0.256 3.744 13 H 0.065 0.935 14 C -0.146 4.146 15 C -0.526 4.526 16 H 0.060 0.940 17 C 0.064 3.936 18 N -0.887 5.887 19 Si 0.899 3.101 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.283 1.283 23 S 0.153 5.847 24 H 0.086 0.914 25 H 0.089 0.911 26 H 0.081 0.919 27 H 0.183 0.817 28 H 0.151 0.849 29 H 0.122 0.878 30 H 0.044 0.956 31 H 0.053 0.947 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.011 0.989 35 H 0.029 0.971 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.715 6.807 2.317 20.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.244 4.244 3 N -0.189 5.189 4 C -0.092 4.092 5 C -0.324 4.324 6 C -0.034 4.034 7 C -0.210 4.210 8 C 0.322 3.678 9 O -0.439 6.439 10 N -0.315 5.315 11 C -0.063 4.063 12 C 0.156 3.844 13 H 0.082 0.918 14 C -0.204 4.204 15 C -0.565 4.565 16 H 0.078 0.922 17 C -0.138 4.138 18 N -0.525 5.525 19 Si 0.726 3.274 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.209 1.209 23 S 0.411 5.589 24 H 0.105 0.895 25 H 0.107 0.893 26 H 0.100 0.900 27 H 0.200 0.800 28 H 0.169 0.831 29 H 0.140 0.860 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.101 0.899 33 H 0.112 0.888 34 H 0.030 0.970 35 H 0.048 0.952 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -19.591 6.540 2.348 20.787 hybrid contribution 0.804 -0.031 -0.819 1.148 sum -18.787 6.510 1.529 19.942 Atomic orbital electron populations 1.20454 0.85183 1.04256 1.03896 1.27214 1.01965 0.91314 1.03887 1.65992 1.05300 1.31506 1.16084 1.22587 0.90888 0.95257 1.00467 1.24001 0.97927 0.96582 1.13900 1.20550 0.92412 0.96451 0.93965 1.22488 0.98146 0.95901 1.04416 1.16867 0.88822 0.83280 0.78786 1.90787 1.46353 1.54980 1.51743 1.48205 1.09529 1.04499 1.69311 1.21664 0.89052 0.95018 1.00545 1.18966 0.76377 0.94966 0.94124 0.91767 1.22078 1.04155 0.98450 0.95747 1.21361 0.97448 1.31405 1.06241 0.92174 1.24901 0.95785 0.96368 0.96752 1.69896 1.02873 1.44478 1.35291 0.86434 0.78283 0.79807 0.82836 1.19807 1.20889 1.20926 1.83953 0.97185 1.11406 1.66398 0.89543 0.89260 0.90040 0.79972 0.83148 0.85992 0.93720 0.92790 0.89906 0.88796 0.96994 0.95157 0.92726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 10.46 36.01 0.38 -0.10 16 2 C 0.03 0.30 7.37 -13.32 -0.10 0.20 16 3 N -0.47 -5.68 10.50 -11.18 -0.12 -5.80 16 4 C 0.06 0.74 11.38 -18.35 -0.21 0.53 16 5 C -0.20 -2.50 6.26 -38.68 -0.24 -2.75 16 6 C -0.01 -0.16 9.39 -39.21 -0.37 -0.53 16 7 C -0.19 -2.99 8.58 -39.28 -0.34 -3.32 16 8 C 0.53 11.30 7.44 -15.00 -0.11 11.18 16 9 O -0.56 -13.87 15.43 5.11 0.08 -13.79 16 10 N -0.59 -12.73 2.75 -178.70 -0.49 -13.22 16 11 C 0.08 1.37 9.13 59.85 0.55 1.92 16 12 C 0.26 6.61 2.64 -69.08 -0.18 6.43 16 13 H 0.06 1.92 6.90 -51.93 -0.36 1.56 16 14 C -0.15 -3.52 8.97 37.16 0.33 -3.19 16 15 C -0.53 -14.27 7.99 -34.44 -0.28 -14.54 16 16 H 0.06 1.61 7.33 -52.49 -0.38 1.22 16 17 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 18 N -0.89 -25.17 11.32 55.43 0.63 -24.54 16 19 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 20 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 23 S 0.15 1.56 21.92 -107.50 -2.36 -0.79 16 24 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.18 1.71 8.06 -52.49 -0.42 1.29 16 28 H 0.15 2.20 7.46 -52.49 -0.39 1.81 16 29 H 0.12 1.66 5.12 -52.49 -0.27 1.39 16 30 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.75 6.07 -51.93 -0.32 0.43 16 32 H 0.08 1.48 7.02 -51.93 -0.36 1.11 16 33 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 34 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 36 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 318.40 15.07 4.80 4.80 Total: -1.00 -32.41 318.40 -7.61 -40.02 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -4.47 Total: -0.18 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: -0.66 Total: -2.51 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: 0.02 Total: -43.55 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: 0.08 Total: -13.79 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: 1.56 SS G_CDS: -2.36 Total: -0.79 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.41 -7.61 -40.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112289225.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.599 kcal (2) G-P(sol) polarization free energy of solvation -32.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds