Wall clock time and date at job start Tue Mar 31 2020 01:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29356 * 124.67090 * 2 1 4 4 C 1.30957 * 117.48976 * 179.74725 * 3 2 1 5 5 C 1.37067 * 113.85166 * 0.45086 * 4 3 2 6 6 C 1.41720 * 126.19498 * 179.85453 * 5 4 3 7 7 C 1.35565 * 120.00016 * 179.71432 * 6 5 4 8 8 C 1.41545 * 120.00042 * 179.97438 * 7 6 5 9 9 O 1.21783 * 120.00037 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00192 * 179.97438 * 8 7 6 11 11 C 1.46506 * 119.99969 * 0.02562 * 10 8 7 12 12 C 1.46499 * 120.00036 * 179.72750 * 10 8 7 13 13 H 1.08998 * 109.47061 * 0.27944 * 12 10 8 14 14 C 1.53002 * 109.47216 * 120.28122 * 12 10 8 15 15 C 1.50702 * 109.46950 * 240.27755 * 12 10 8 16 16 H 1.07994 * 120.00187 * 0.02562 * 15 12 10 17 17 C 1.37879 * 120.00033 * 180.02562 * 15 12 10 18 18 N 1.31522 * 119.99787 * 0.02562 * 17 15 12 19 19 Si 1.86795 * 120.00370 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.47212 * 0.02562 * 19 17 15 21 21 H 1.48510 * 109.46951 * 119.99547 * 19 17 15 22 22 H 1.48494 * 109.47536 * 239.99850 * 19 17 15 23 23 S 1.70909 * 124.67636 * 179.97438 * 2 1 3 24 24 H 1.09000 * 109.47024 * 270.00193 * 1 2 3 25 25 H 1.09000 * 109.47416 * 29.99999 * 1 2 3 26 26 H 1.09005 * 109.46854 * 150.00276 * 1 2 3 27 27 H 1.08001 * 123.07747 * 180.30382 * 4 3 2 28 28 H 1.08001 * 120.00238 * 359.71080 * 6 5 4 29 29 H 1.08001 * 119.99749 * 0.02562 * 7 6 5 30 30 H 1.08999 * 109.46892 * 269.72362 * 11 10 8 31 31 H 1.09000 * 109.46803 * 29.71536 * 11 10 8 32 32 H 1.09000 * 109.47214 * 149.72329 * 11 10 8 33 33 H 1.08996 * 109.47401 * 180.02562 * 14 12 10 34 34 H 1.09002 * 109.46768 * 300.00122 * 14 12 10 35 35 H 1.08996 * 109.46989 * 59.99467 * 14 12 10 36 36 H 0.97000 * 119.99632 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2429 1.0639 0.0000 4 6 3.5421 0.9002 0.0051 5 6 3.9354 -0.4129 0.0000 6 6 5.2711 -0.8865 0.0007 7 6 5.5176 -2.2195 0.0010 8 6 6.8517 -2.6926 0.0012 9 8 7.7780 -1.9021 0.0016 10 7 7.0968 -4.0178 0.0020 11 6 5.9824 -4.9689 0.0022 12 6 8.4775 -4.5074 -0.0038 13 1 9.1634 -3.6602 -0.0033 14 6 8.7211 -5.3615 1.2420 15 6 8.7097 -5.3411 -1.2376 16 1 7.9090 -5.4908 -1.9466 17 6 9.9444 -5.9126 -1.4612 18 7 10.9193 -5.7306 -0.5974 19 14 10.2320 -6.9465 -2.9900 20 1 8.9852 -6.9973 -3.7951 21 1 11.3192 -6.3404 -3.8001 22 1 10.6205 -8.3230 -2.5909 23 16 2.4794 -1.4055 0.0006 24 1 -0.3633 0.0000 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3633 -0.8901 -0.5138 27 1 4.2401 1.7244 0.0104 28 1 6.0927 -0.1855 0.0010 29 1 4.6960 -2.9206 0.0003 30 1 5.7089 -5.2079 1.0299 31 1 5.1268 -4.5261 -0.5078 32 1 6.2823 -5.8801 -0.5153 33 1 9.7485 -5.7254 1.2380 34 1 8.5531 -4.7586 2.1344 35 1 8.0352 -6.2086 1.2416 36 1 11.7881 -6.1323 -0.7549 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112289225.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:26 Heat of formation + Delta-G solvation = 5.886492 kcal Electronic energy + Delta-G solvation = -18843.333153 eV Core-core repulsion = 15840.152456 eV Total energy + Delta-G solvation = -3003.180697 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.02508 -40.62320 -37.29823 -35.69039 -34.78773 -32.54220 -31.40080 -29.02222 -27.60886 -27.31086 -25.52082 -24.26401 -22.13388 -20.69330 -19.92360 -18.63224 -18.48174 -18.11952 -17.13656 -16.32707 -16.16654 -15.96445 -15.90739 -15.01845 -14.79140 -14.51110 -14.26811 -13.99100 -13.63707 -13.60147 -13.48903 -13.07923 -13.02083 -12.81818 -12.72408 -12.62935 -12.25843 -12.19492 -12.10974 -11.79383 -11.19192 -10.91946 -10.63633 -10.49704 -10.15042 -9.47928 -9.11216 -8.14914 -6.31845 -1.07023 0.23451 0.64766 0.66598 1.40849 1.42580 1.54086 1.80820 2.32708 2.51885 2.53843 3.12892 3.18591 3.74910 3.94412 4.03170 4.15302 4.32015 4.48438 4.63581 4.68800 4.72316 4.74982 4.88963 4.98229 5.01060 5.02796 5.10734 5.14472 5.24012 5.47805 5.62885 5.66860 6.04274 6.15898 6.63535 6.76197 6.81014 7.30072 7.46121 8.89723 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.034007 B = 0.003420 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.161380 B = 8184.321526 C = 8373.528703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.044 3.956 3 N -0.505 5.505 4 C 0.082 3.918 5 C -0.248 4.248 6 C 0.029 3.971 7 C -0.218 4.218 8 C 0.527 3.473 9 O -0.613 6.613 10 N -0.597 5.597 11 C 0.078 3.922 12 C 0.260 3.740 13 H 0.009 0.991 14 C -0.131 4.131 15 C -0.539 4.539 16 H 0.062 0.938 17 C 0.014 3.986 18 N -0.918 5.918 19 Si 0.967 3.033 20 H -0.264 1.264 21 H -0.285 1.285 22 H -0.273 1.273 23 S 0.189 5.811 24 H 0.105 0.895 25 H 0.095 0.905 26 H 0.104 0.896 27 H 0.198 0.802 28 H 0.139 0.861 29 H 0.149 0.851 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.019 0.981 35 H 0.047 0.953 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.188 6.408 1.789 24.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.229 4.229 3 N -0.220 5.220 4 C -0.075 4.075 5 C -0.369 4.369 6 C 0.006 3.994 7 C -0.241 4.241 8 C 0.320 3.680 9 O -0.499 6.499 10 N -0.326 5.326 11 C -0.064 4.064 12 C 0.158 3.842 13 H 0.027 0.973 14 C -0.190 4.190 15 C -0.577 4.577 16 H 0.080 0.920 17 C -0.186 4.186 18 N -0.557 5.557 19 Si 0.792 3.208 20 H -0.188 1.188 21 H -0.212 1.212 22 H -0.199 1.199 23 S 0.448 5.552 24 H 0.123 0.877 25 H 0.114 0.886 26 H 0.122 0.878 27 H 0.214 0.786 28 H 0.156 0.844 29 H 0.167 0.833 30 H 0.086 0.914 31 H 0.106 0.894 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.038 0.962 35 H 0.067 0.933 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -23.114 6.100 1.826 23.975 hybrid contribution 1.674 0.293 -0.622 1.810 sum -21.440 6.394 1.204 22.405 Atomic orbital electron populations 1.20725 0.82356 1.05703 1.05456 1.28042 1.03660 0.90930 1.00242 1.66133 1.05360 1.32407 1.18100 1.22949 0.91369 0.95560 0.97634 1.23870 0.97853 0.97616 1.17542 1.20530 0.93366 0.95677 0.89816 1.22118 0.95727 0.96884 1.09380 1.17594 0.90362 0.82651 0.77357 1.90745 1.48445 1.56143 1.54541 1.48188 1.09070 1.05688 1.69611 1.21906 0.88395 0.93751 1.02394 1.18556 0.78141 0.92890 0.94652 0.97318 1.21864 1.02981 0.98762 0.95380 1.21616 0.97788 1.31521 1.06811 0.92019 1.25766 0.95490 0.97554 0.99752 1.70039 1.03273 1.45339 1.37045 0.85374 0.78174 0.78276 0.78980 1.18829 1.21159 1.19869 1.83805 0.95473 1.10568 1.65395 0.87706 0.88643 0.87768 0.78574 0.84371 0.83338 0.91438 0.89406 0.90936 0.91312 0.96242 0.93347 0.92614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.68 10.46 71.24 0.74 0.07 16 2 C 0.04 0.74 7.37 88.47 0.65 1.39 16 3 N -0.51 -10.77 10.50 -189.30 -1.99 -12.76 16 4 C 0.08 1.75 11.38 84.55 0.96 2.71 16 5 C -0.25 -5.68 6.26 22.86 0.14 -5.54 16 6 C 0.03 0.81 9.39 22.51 0.21 1.02 16 7 C -0.22 -6.91 8.58 22.47 0.19 -6.72 16 8 C 0.53 23.07 7.44 85.06 0.63 23.70 16 9 O -0.61 -32.43 15.43 -4.61 -0.07 -32.51 16 10 N -0.60 -26.37 2.75 -837.45 -2.31 -28.68 16 11 C 0.08 2.51 9.13 127.77 1.17 3.68 16 12 C 0.26 13.95 2.64 44.25 0.12 14.07 16 13 H 0.01 0.57 6.90 -2.39 -0.02 0.55 16 14 C -0.13 -6.50 8.97 71.98 0.65 -5.86 16 15 C -0.54 -29.85 7.99 25.60 0.20 -29.65 16 16 H 0.06 3.31 7.33 -2.91 -0.02 3.29 16 17 C 0.01 0.77 5.30 84.65 0.45 1.22 16 18 N -0.92 -53.64 11.32 21.45 0.24 -53.40 16 19 Si 0.97 43.41 29.54 68.60 2.03 45.43 16 20 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 21 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 22 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 23 S 0.19 3.28 21.92 -56.49 -1.24 2.04 16 24 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.10 0.44 8.14 -2.38 -0.02 0.42 16 27 H 0.20 3.39 8.06 -2.91 -0.02 3.36 16 28 H 0.14 4.17 7.46 -2.91 -0.02 4.15 16 29 H 0.15 3.73 5.12 -2.91 -0.01 3.72 16 30 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.09 2.22 6.07 -2.39 -0.01 2.20 16 32 H 0.07 2.49 7.02 -2.39 -0.02 2.48 16 33 H 0.07 3.76 6.07 -2.39 -0.01 3.74 16 34 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.05 2.16 7.67 -2.39 -0.02 2.14 16 36 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -73.67 318.40 3.88 -69.79 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: 1.09 Total: 9.99 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: 6.12 Total: 0.09 kcal Atomic # 7 Polarization: -90.79 SS G_CDS: -4.05 Total: -94.84 kcal Atomic # 8 Polarization: -32.43 SS G_CDS: -0.07 Total: -32.51 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 16 Polarization: 3.28 SS G_CDS: -1.24 Total: 2.04 kcal Total: -73.67 3.88 -69.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112289225.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.672 kcal (2) G-P(sol) polarization free energy of solvation -73.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds