Wall clock time and date at job start Tue Mar 31 2020 01:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21324 * 119.99709 * 2 1 4 4 C 1.46613 * 120.00182 * 179.97438 * 2 1 3 5 5 C 1.40106 * 121.02613 * 85.02945 * 4 2 1 6 6 C 1.50694 * 120.52300 * 0.02562 * 5 4 2 7 7 N 1.32129 * 118.96062 * 180.27228 * 5 4 2 8 8 C 1.32049 * 121.25201 * 359.74270 * 7 5 4 9 9 C 1.50702 * 118.83880 * 180.02562 * 8 7 5 10 10 N 1.31617 * 122.32397 * 359.97438 * 8 7 5 11 11 C 1.33077 * 120.86256 * 0.02562 * 10 8 7 12 12 S 1.76206 * 120.67024 * 179.97438 * 11 10 8 13 13 C 1.81001 * 99.99924 * 0.02562 * 12 11 10 14 14 C 1.52995 * 109.46886 * 179.97438 * 13 12 11 15 15 C 1.50709 * 109.46957 * 179.97438 * 14 13 12 16 16 H 1.07996 * 119.99696 * 359.97438 * 15 14 13 17 17 C 1.37878 * 120.00035 * 179.97438 * 15 14 13 18 18 N 1.31521 * 119.99592 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99906 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47139 * 60.00007 * 19 17 15 21 21 H 1.48498 * 109.47155 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47097 * 299.99995 * 19 17 15 23 23 H 1.08999 * 109.46945 * 184.98211 * 1 2 3 24 24 H 1.08997 * 109.47122 * 304.97637 * 1 2 3 25 25 H 1.08997 * 109.47228 * 64.97953 * 1 2 3 26 26 H 1.08998 * 109.47466 * 275.59083 * 6 5 4 27 27 H 1.09004 * 109.46525 * 35.58759 * 6 5 4 28 28 H 1.08996 * 109.47607 * 155.58428 * 6 5 4 29 29 H 1.09004 * 109.46486 * 269.97299 * 9 8 7 30 30 H 1.08999 * 109.46881 * 29.97052 * 9 8 7 31 31 H 1.08998 * 109.47186 * 149.97899 * 9 8 7 32 32 H 1.09005 * 109.46619 * 299.99750 * 13 12 11 33 33 H 1.09004 * 109.47406 * 59.99850 * 13 12 11 34 34 H 1.08995 * 109.47392 * 299.99510 * 14 13 12 35 35 H 1.08997 * 109.47447 * 60.00362 * 14 13 12 36 36 H 0.97006 * 119.99233 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0507 0.0000 4 6 2.2401 -1.2697 0.0006 5 6 2.5111 -1.9476 -1.1952 6 6 2.0532 -1.3836 -2.5155 7 7 3.1702 -3.0918 -1.1468 8 6 3.5784 -3.5992 0.0020 9 6 4.3262 -4.9075 -0.0061 10 7 3.3560 -3.0021 1.1536 11 6 2.7003 -1.8454 1.2075 12 16 2.4048 -1.0508 2.7523 13 6 3.1967 -2.2334 3.8705 14 6 3.0635 -1.7395 5.3124 15 6 3.7223 -2.7245 6.2436 16 1 4.1889 -3.6139 5.8466 17 6 3.7293 -2.4901 7.6023 18 7 3.1606 -1.4072 8.0857 19 14 4.5465 -3.7106 8.7564 20 1 5.9842 -3.8363 8.4066 21 1 4.4171 -3.2314 10.1560 22 1 3.8873 -5.0347 8.6241 23 1 -0.3633 -1.0238 0.0892 24 1 -0.3633 0.5891 0.8420 25 1 -0.3633 0.4346 -0.9312 26 1 1.0198 -1.6784 -2.6978 27 1 2.1216 -0.2960 -2.4892 28 1 2.6871 -1.7682 -3.3144 29 1 3.6180 -5.7313 0.0836 30 1 4.8794 -5.0040 -0.9403 31 1 5.0218 -4.9336 0.8327 32 1 2.7133 -3.2055 3.7728 33 1 4.2522 -2.3250 3.6143 34 1 3.5471 -0.7676 5.4098 35 1 2.0081 -1.6476 5.5690 36 1 3.1652 -1.2426 9.0417 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119244698.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:16:30 Heat of formation + Delta-G solvation = -11.742271 kcal Electronic energy + Delta-G solvation = -18924.738832 eV Core-core repulsion = 15920.793694 eV Total energy + Delta-G solvation = -3003.945138 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.15525 -39.09975 -34.73152 -33.77416 -33.54234 -31.00799 -30.54802 -29.32083 -28.23788 -25.47994 -24.18921 -22.69510 -21.23537 -20.25172 -18.20262 -17.05294 -16.62765 -16.50667 -15.83105 -14.94074 -14.90667 -14.54539 -14.42560 -13.90817 -13.60402 -13.51056 -13.24697 -12.77515 -12.66064 -12.55585 -12.42775 -12.23180 -12.12927 -11.73299 -11.65229 -11.14488 -10.89170 -10.69864 -10.30427 -10.24895 -9.83047 -9.73117 -9.55977 -9.35202 -9.16338 -8.47086 -7.58478 -6.11154 -4.15822 0.59114 0.90317 1.58525 1.66358 2.65211 3.28768 3.33268 3.35923 3.46676 3.72917 3.86641 4.08518 4.38631 4.55323 4.84392 4.90970 5.07437 5.18320 5.23205 5.24856 5.28701 5.33184 5.45284 5.55304 5.63707 5.73134 5.82850 5.94114 6.15114 6.24695 6.62909 6.80478 7.24628 7.44123 7.50448 7.83803 7.98850 8.20248 8.88312 9.48533 10.99768 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.022006 B = 0.004339 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.057356 B = 6452.074813 C = 7540.890125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.419 3.581 3 O -0.436 6.436 4 C -0.268 4.268 5 C 0.221 3.779 6 C -0.111 4.111 7 N -0.536 5.536 8 C 0.347 3.653 9 C -0.086 4.086 10 N -0.521 5.521 11 C 0.199 3.801 12 S -0.054 6.054 13 C -0.075 4.075 14 C 0.033 3.967 15 C -0.520 4.520 16 H 0.060 0.940 17 C 0.060 3.940 18 N -0.892 5.892 19 Si 0.899 3.101 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.275 1.275 23 H 0.081 0.919 24 H 0.101 0.899 25 H 0.097 0.903 26 H 0.091 0.909 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.027 0.973 35 H 0.027 0.973 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.597 -2.026 -19.803 20.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.292 3.708 3 O -0.307 6.307 4 C -0.282 4.282 5 C 0.073 3.927 6 C -0.168 4.168 7 N -0.254 5.254 8 C 0.078 3.922 9 C -0.145 4.145 10 N -0.240 5.240 11 C -0.057 4.057 12 S 0.191 5.809 13 C -0.223 4.223 14 C -0.006 4.006 15 C -0.560 4.560 16 H 0.078 0.922 17 C -0.142 4.142 18 N -0.530 5.530 19 Si 0.726 3.274 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.201 1.201 23 H 0.100 0.900 24 H 0.120 0.880 25 H 0.116 0.884 26 H 0.109 0.891 27 H 0.098 0.902 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.108 0.892 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.045 0.955 35 H 0.045 0.955 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.382 -1.150 -19.236 19.763 hybrid contribution 0.595 -1.119 0.503 1.363 sum -3.787 -2.269 -18.734 19.247 Atomic orbital electron populations 1.22221 0.92692 1.05117 1.05165 1.22053 0.91880 0.86637 0.70278 1.90597 1.72283 1.33656 1.34213 1.21605 1.09711 1.01939 0.94987 1.21631 0.88556 0.88463 0.94001 1.20861 1.02714 1.01005 0.92237 1.68102 1.14839 1.12592 1.29851 1.23382 0.90162 0.95593 0.83106 1.20620 0.99635 0.89893 1.04326 1.68778 1.17141 1.08730 1.29365 1.24134 0.90942 0.92491 0.98152 1.86142 1.69223 1.32319 0.93262 1.23988 1.02255 0.98062 0.97962 1.19010 0.98467 0.97482 0.85632 1.21000 1.36882 1.06988 0.91130 0.92194 1.25010 0.95344 0.95572 0.98264 1.69961 1.43729 1.25814 1.13491 0.86543 0.79979 0.81233 0.79609 1.20076 1.21155 1.20082 0.89954 0.88031 0.88424 0.89077 0.90202 0.89210 0.89331 0.89531 0.89224 0.89595 0.89630 0.95462 0.95483 0.92648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.81 10.32 36.01 0.37 -1.43 16 2 C 0.42 5.67 4.50 -30.93 -0.14 5.53 16 3 O -0.44 -7.18 17.86 5.52 0.10 -7.08 16 4 C -0.27 -3.99 5.50 -104.61 -0.58 -4.56 16 5 C 0.22 2.90 6.87 -81.77 -0.56 2.34 16 6 C -0.11 -0.96 9.74 36.00 0.35 -0.61 16 7 N -0.54 -7.52 10.24 -6.66 -0.07 -7.59 16 8 C 0.35 5.11 7.64 -157.13 -1.20 3.91 16 9 C -0.09 -0.92 10.30 36.01 0.37 -0.55 16 10 N -0.52 -8.92 9.20 -9.05 -0.08 -9.00 16 11 C 0.20 3.44 7.07 -15.80 -0.11 3.33 16 12 S -0.05 -1.01 21.21 -107.50 -2.28 -3.29 16 13 C -0.07 -1.58 4.82 37.16 0.18 -1.40 16 14 C 0.03 0.84 4.98 -27.88 -0.14 0.71 16 15 C -0.52 -14.36 9.11 -34.44 -0.31 -14.67 16 16 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -26.25 13.29 55.43 0.74 -25.52 16 19 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 H 0.08 0.69 7.99 -51.93 -0.41 0.27 16 24 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.08 0.67 7.40 -51.93 -0.38 0.28 16 28 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.09 1.79 8.14 -51.91 -0.42 1.37 16 33 H 0.09 1.83 8.14 -51.91 -0.42 1.40 16 34 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 329.95 15.07 4.97 4.97 Total: -1.00 -32.29 329.95 -8.50 -40.80 By element: Atomic # 1 Polarization: 1.33 SS G_CDS: -4.99 Total: -3.66 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: -1.87 Total: -5.82 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: 0.59 Total: -42.11 kcal Atomic # 8 Polarization: -7.18 SS G_CDS: 0.10 Total: -7.08 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -1.01 SS G_CDS: -2.28 Total: -3.29 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.29 -8.50 -40.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119244698.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.053 kcal (2) G-P(sol) polarization free energy of solvation -32.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds