Wall clock time and date at job start Tue Mar 31 2020 01:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.28671 * 124.92700 * 2 1 4 4 C 1.32522 * 117.87905 * 179.91220 * 3 2 1 5 5 C 1.34615 * 113.15704 * 0.11540 * 4 3 2 6 6 S 1.70913 * 124.93253 * 180.02562 * 2 1 3 7 7 C 1.50992 * 125.22663 * 179.97438 * 5 4 3 8 8 H 1.08998 * 109.77237 * 103.73372 * 7 5 4 9 9 N 1.46504 * 109.62163 * 224.18753 * 7 5 4 10 10 C 1.46499 * 119.99794 * 59.08688 * 9 7 5 11 11 C 1.34774 * 120.00240 * 239.08888 * 9 7 5 12 12 O 1.21691 * 119.99707 * 0.02562 * 11 9 7 13 13 C 1.46374 * 119.99951 * 179.97438 * 11 9 7 14 14 H 1.07991 * 120.00335 * 0.02562 * 13 11 9 15 15 C 1.40055 * 119.99881 * 180.02562 * 13 11 9 16 16 N 1.30678 * 119.99845 * 359.97438 * 15 13 11 17 17 Si 1.86794 * 120.00205 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47341 * 180.02562 * 17 15 13 19 19 H 1.48510 * 109.46748 * 300.00101 * 17 15 13 20 20 H 1.48498 * 109.47206 * 59.99778 * 17 15 13 21 21 C 1.53280 * 108.58128 * 343.91642 * 7 5 4 22 22 C 1.53143 * 108.99509 * 49.27344 * 21 7 5 23 23 C 1.52126 * 124.20065 * 180.09001 * 4 3 2 24 24 H 1.08998 * 109.47076 * 269.98138 * 1 2 3 25 25 H 1.09000 * 109.47329 * 29.98991 * 1 2 3 26 26 H 1.09005 * 109.46804 * 149.98716 * 1 2 3 27 27 H 1.09004 * 109.47522 * 270.00279 * 10 9 7 28 28 H 1.09003 * 109.47296 * 30.00377 * 10 9 7 29 29 H 1.09000 * 109.47462 * 150.00553 * 10 9 7 30 30 H 0.97001 * 119.99601 * 179.97438 * 16 15 13 31 31 H 1.08995 * 109.55151 * 169.13794 * 21 7 5 32 32 H 1.09010 * 109.54468 * 289.32963 * 21 7 5 33 33 H 1.09007 * 109.46860 * 49.62281 * 22 21 7 34 34 H 1.08997 * 109.47439 * 169.62430 * 22 21 7 35 35 H 1.08996 * 109.59635 * 42.71616 * 23 4 3 36 36 H 1.08997 * 109.59691 * 282.25749 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2437 1.0550 0.0000 4 6 3.5589 0.8924 0.0018 5 6 3.9324 -0.4009 0.0009 6 16 2.4857 -1.4012 -0.0006 7 6 5.3591 -0.8955 0.0019 8 1 5.6266 -1.2473 0.9983 9 7 5.5009 -1.9906 -0.9608 10 6 5.1897 -1.7675 -2.3749 11 6 5.9175 -3.2032 -0.5457 12 8 6.1754 -3.3886 0.6291 13 6 6.0586 -4.2974 -1.5076 14 1 5.8293 -4.1330 -2.5500 15 6 6.4910 -5.5577 -1.0760 16 7 6.7690 -5.7565 0.1853 17 14 6.6718 -6.9540 -2.3036 18 1 7.1400 -8.1747 -1.5994 19 1 5.3587 -7.2245 -2.9424 20 1 7.6596 -6.5729 -3.3448 21 6 6.2782 0.2640 -0.3984 22 6 5.9242 1.4940 0.4425 23 6 4.5619 2.0361 0.0040 24 1 -0.3633 -0.0003 1.0276 25 1 -0.3634 0.8901 -0.5137 26 1 -0.3633 -0.8899 -0.5141 27 1 4.1376 -1.9886 -2.5548 28 1 5.3915 -0.7275 -2.6317 29 1 5.8085 -2.4204 -2.9905 30 1 7.0681 -6.6295 0.4842 31 1 7.3164 -0.0146 -0.2183 32 1 6.1395 0.4910 -1.4556 33 1 5.8827 1.2145 1.4954 34 1 6.6840 2.2624 0.3003 35 1 4.2347 2.8079 0.7006 36 1 4.6405 2.4554 -0.9990 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153809876.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:32:50 Heat of formation + Delta-G solvation = -1.503981 kcal Electronic energy + Delta-G solvation = -20035.044096 eV Core-core repulsion = 17031.542924 eV Total energy + Delta-G solvation = -3003.501172 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.96525 -37.97124 -35.91537 -33.54990 -32.50128 -31.32081 -29.71653 -27.60372 -26.20202 -25.68129 -23.50321 -22.41819 -20.83208 -19.46981 -17.95252 -17.52052 -16.55264 -15.73859 -15.08412 -14.93829 -14.43258 -14.21663 -14.11954 -13.73782 -13.42255 -13.18255 -12.59396 -12.45721 -12.35165 -12.13116 -11.69603 -11.58100 -11.49722 -11.32787 -11.24642 -10.98030 -10.72785 -10.50786 -10.37920 -10.25873 -10.15116 -9.25534 -8.89821 -8.82500 -8.25560 -7.63457 -7.35738 -6.24678 -4.70738 1.06022 1.72533 2.22223 3.02465 3.12271 3.17724 3.19206 4.03992 4.20002 4.46491 4.48519 5.00522 5.05009 5.18164 5.27594 5.37559 5.40312 5.46031 5.67029 5.72246 5.80338 5.81776 5.86128 6.02201 6.10324 6.12413 6.26751 6.32280 6.43723 6.48991 6.58186 6.63782 7.39705 7.52028 8.04477 8.06123 8.27519 8.96598 9.32878 10.50164 10.68865 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.021898 B = 0.005754 C = 0.005017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.330064 B = 4864.644067 C = 5580.038529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.014 3.986 3 N -0.478 5.478 4 C 0.048 3.952 5 C -0.208 4.208 6 S 0.157 5.843 7 C 0.220 3.780 8 H 0.110 0.890 9 N -0.639 5.639 10 C 0.100 3.900 11 C 0.556 3.444 12 O -0.576 6.576 13 C -0.540 4.540 14 H 0.073 0.927 15 C 0.088 3.912 16 N -0.765 5.765 17 Si 0.907 3.093 18 H -0.280 1.280 19 H -0.267 1.267 20 H -0.267 1.267 21 C -0.122 4.122 22 C -0.117 4.117 23 C -0.032 4.032 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.030 0.970 28 H 0.043 0.957 29 H 0.074 0.926 30 H 0.269 0.731 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.993 11.138 -2.751 13.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.264 4.264 3 N -0.193 5.193 4 C -0.084 4.084 5 C -0.331 4.331 6 S 0.415 5.585 7 C 0.113 3.887 8 H 0.127 0.873 9 N -0.376 5.376 10 C -0.044 4.044 11 C 0.363 3.637 12 O -0.458 6.458 13 C -0.577 4.577 14 H 0.091 0.909 15 C -0.132 4.132 16 N -0.394 5.394 17 Si 0.731 3.269 18 H -0.205 1.205 19 H -0.192 1.192 20 H -0.192 1.192 21 C -0.162 4.162 22 C -0.155 4.155 23 C -0.072 4.072 24 H 0.098 0.902 25 H 0.101 0.899 26 H 0.096 0.904 27 H 0.048 0.952 28 H 0.061 0.939 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.316 10.265 -1.957 12.756 hybrid contribution 0.521 -0.008 -0.737 0.903 sum -6.794 10.257 -2.694 12.595 Atomic orbital electron populations 1.20329 0.85772 1.03628 1.03336 1.26753 1.01446 0.92315 1.05852 1.65786 1.04782 1.32516 1.16204 1.20785 0.89433 0.93521 1.04688 1.26845 1.01007 0.95634 1.09643 1.84358 0.96534 1.10519 1.67121 1.19143 0.85251 0.87546 0.96795 0.87263 1.48093 1.72667 1.10671 1.06218 1.21397 0.99432 0.99647 0.83919 1.18311 0.76491 0.80091 0.88795 1.90598 1.54936 1.81405 1.18873 1.20946 1.47843 0.94061 0.94810 0.90938 1.25736 0.92965 0.99299 0.95242 1.70008 1.31532 1.22786 1.15062 0.86445 0.79350 0.80132 0.80945 1.20510 1.19221 1.19221 1.21970 0.99943 0.94109 1.00213 1.21568 0.95788 0.97635 1.00556 1.20276 0.91251 0.93551 1.02100 0.90164 0.89890 0.90429 0.95164 0.93876 0.90733 0.91975 0.90690 0.91408 0.91403 0.90938 0.90442 0.90528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.76 10.46 36.01 0.38 -0.39 16 2 C 0.01 0.22 7.38 -13.60 -0.10 0.12 16 3 N -0.48 -8.01 10.51 -7.32 -0.08 -8.08 16 4 C 0.05 0.79 6.78 -82.87 -0.56 0.23 16 5 C -0.21 -3.81 5.47 -35.45 -0.19 -4.01 16 6 S 0.16 2.77 23.06 -107.50 -2.48 0.29 16 7 C 0.22 4.36 2.88 -68.79 -0.20 4.16 16 8 H 0.11 2.49 6.91 -51.93 -0.36 2.13 16 9 N -0.64 -14.27 2.68 -176.59 -0.47 -14.74 16 10 C 0.10 1.90 9.49 59.85 0.57 2.46 16 11 C 0.56 15.44 7.61 -12.99 -0.10 15.34 16 12 O -0.58 -18.14 14.35 5.20 0.07 -18.06 16 13 C -0.54 -14.84 8.74 -35.63 -0.31 -15.15 16 14 H 0.07 1.82 6.00 -52.49 -0.31 1.51 16 15 C 0.09 2.40 5.50 -17.36 -0.10 2.30 16 16 N -0.77 -22.50 11.83 55.55 0.66 -21.84 16 17 Si 0.91 19.76 29.56 -169.99 -5.02 14.74 16 18 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 19 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 20 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 21 C -0.12 -1.93 5.39 -26.51 -0.14 -2.07 16 22 C -0.12 -1.51 5.87 -26.64 -0.16 -1.67 16 23 C -0.03 -0.42 6.29 -27.16 -0.17 -0.59 16 24 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.04 0.70 6.28 -51.93 -0.33 0.38 16 29 H 0.07 1.42 6.09 -51.93 -0.32 1.11 16 30 H 0.27 7.22 8.29 -40.82 -0.34 6.88 16 31 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.07 1.02 6.29 -51.92 -0.33 0.70 16 33 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 308.28 15.07 4.65 4.65 Total: -1.00 -33.59 308.28 -8.34 -41.93 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -4.58 Total: 0.39 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -1.09 Total: 0.73 kcal Atomic # 7 Polarization: -44.77 SS G_CDS: 0.11 Total: -44.66 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: 0.07 Total: -18.06 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Atomic # 16 Polarization: 2.77 SS G_CDS: -2.48 Total: 0.29 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -33.59 -8.34 -41.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153809876.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.425 kcal (2) G-P(sol) polarization free energy of solvation -33.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds