Wall clock time and date at job start Tue Mar 31 2020 01:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.28671 * 124.92700 * 2 1 4 4 C 1.32522 * 117.87905 * 179.91220 * 3 2 1 5 5 C 1.34615 * 113.15704 * 0.11540 * 4 3 2 6 6 S 1.70913 * 124.93253 * 180.02562 * 2 1 3 7 7 C 1.50992 * 125.22663 * 179.97438 * 5 4 3 8 8 H 1.08998 * 109.77237 * 103.73372 * 7 5 4 9 9 N 1.46504 * 109.62163 * 224.18753 * 7 5 4 10 10 C 1.46499 * 119.99794 * 59.08688 * 9 7 5 11 11 C 1.34774 * 120.00240 * 239.08888 * 9 7 5 12 12 O 1.21691 * 119.99707 * 0.02562 * 11 9 7 13 13 C 1.46374 * 119.99951 * 179.97438 * 11 9 7 14 14 H 1.07991 * 120.00335 * 0.02562 * 13 11 9 15 15 C 1.40055 * 119.99881 * 180.02562 * 13 11 9 16 16 N 1.30678 * 119.99845 * 359.97438 * 15 13 11 17 17 Si 1.86794 * 120.00205 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47341 * 180.02562 * 17 15 13 19 19 H 1.48510 * 109.46748 * 300.00101 * 17 15 13 20 20 H 1.48498 * 109.47206 * 59.99778 * 17 15 13 21 21 C 1.53280 * 108.58128 * 343.91642 * 7 5 4 22 22 C 1.53143 * 108.99509 * 49.27344 * 21 7 5 23 23 C 1.52126 * 124.20065 * 180.09001 * 4 3 2 24 24 H 1.08998 * 109.47076 * 269.98138 * 1 2 3 25 25 H 1.09000 * 109.47329 * 29.98991 * 1 2 3 26 26 H 1.09005 * 109.46804 * 149.98716 * 1 2 3 27 27 H 1.09004 * 109.47522 * 270.00279 * 10 9 7 28 28 H 1.09003 * 109.47296 * 30.00377 * 10 9 7 29 29 H 1.09000 * 109.47462 * 150.00553 * 10 9 7 30 30 H 0.97001 * 119.99601 * 179.97438 * 16 15 13 31 31 H 1.08995 * 109.55151 * 169.13794 * 21 7 5 32 32 H 1.09010 * 109.54468 * 289.32963 * 21 7 5 33 33 H 1.09007 * 109.46860 * 49.62281 * 22 21 7 34 34 H 1.08997 * 109.47439 * 169.62430 * 22 21 7 35 35 H 1.08996 * 109.59635 * 42.71616 * 23 4 3 36 36 H 1.08997 * 109.59691 * 282.25749 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2437 1.0550 0.0000 4 6 3.5589 0.8924 0.0018 5 6 3.9324 -0.4009 0.0009 6 16 2.4857 -1.4012 -0.0006 7 6 5.3591 -0.8955 0.0019 8 1 5.6266 -1.2473 0.9983 9 7 5.5009 -1.9906 -0.9608 10 6 5.1897 -1.7675 -2.3749 11 6 5.9175 -3.2032 -0.5457 12 8 6.1754 -3.3886 0.6291 13 6 6.0586 -4.2974 -1.5076 14 1 5.8293 -4.1330 -2.5500 15 6 6.4910 -5.5577 -1.0760 16 7 6.7690 -5.7565 0.1853 17 14 6.6718 -6.9540 -2.3036 18 1 7.1400 -8.1747 -1.5994 19 1 5.3587 -7.2245 -2.9424 20 1 7.6596 -6.5729 -3.3448 21 6 6.2782 0.2640 -0.3984 22 6 5.9242 1.4940 0.4425 23 6 4.5619 2.0361 0.0040 24 1 -0.3633 -0.0003 1.0276 25 1 -0.3634 0.8901 -0.5137 26 1 -0.3633 -0.8899 -0.5141 27 1 4.1376 -1.9886 -2.5548 28 1 5.3915 -0.7275 -2.6317 29 1 5.8085 -2.4204 -2.9905 30 1 7.0681 -6.6295 0.4842 31 1 7.3164 -0.0146 -0.2183 32 1 6.1395 0.4910 -1.4556 33 1 5.8827 1.2145 1.4954 34 1 6.6840 2.2624 0.3003 35 1 4.2347 2.8079 0.7006 36 1 4.6405 2.4554 -0.9990 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153809876.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:32:49 Heat of formation + Delta-G solvation = -23.769449 kcal Electronic energy + Delta-G solvation = -20036.009599 eV Core-core repulsion = 17031.542924 eV Total energy + Delta-G solvation = -3004.466675 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.30161 -39.74052 -37.48527 -35.23866 -34.61525 -32.40827 -31.17282 -28.76748 -28.21589 -27.31271 -24.80709 -23.86714 -22.03575 -21.28676 -19.31592 -18.83063 -18.46122 -17.73220 -16.63197 -16.36906 -15.98852 -15.70962 -15.31385 -15.06639 -14.93866 -14.40849 -14.24831 -13.69676 -13.55172 -13.46972 -13.24950 -13.19723 -13.06080 -12.88684 -12.72284 -12.57963 -12.24633 -12.09779 -11.87645 -11.75910 -11.55468 -10.93005 -10.58329 -10.24349 -9.84984 -9.49984 -9.16483 -8.29994 -6.86370 -0.25486 0.41194 0.91240 1.38857 1.41797 1.53402 1.74364 2.22699 2.43505 2.79320 3.05440 3.54686 3.76568 3.91037 4.01484 4.04858 4.19959 4.34590 4.44027 4.54273 4.63098 4.64567 4.67144 4.76975 4.88797 4.96664 4.98746 5.03734 5.10662 5.16020 5.32919 5.35634 5.37843 5.71325 6.09575 6.34609 6.74299 6.86059 7.36181 8.43657 8.64971 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.021898 B = 0.005754 C = 0.005017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.330064 B = 4864.644067 C = 5580.038529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.045 3.955 3 N -0.493 5.493 4 C 0.061 3.939 5 C -0.239 4.239 6 S 0.097 5.903 7 C 0.221 3.779 8 H 0.063 0.937 9 N -0.638 5.638 10 C 0.103 3.897 11 C 0.542 3.458 12 O -0.629 6.629 13 C -0.566 4.566 14 H 0.092 0.908 15 C 0.031 3.969 16 N -0.820 5.820 17 Si 0.993 3.007 18 H -0.275 1.275 19 H -0.255 1.255 20 H -0.252 1.252 21 C -0.115 4.115 22 C -0.108 4.108 23 C -0.030 4.030 24 H 0.099 0.901 25 H 0.100 0.900 26 H 0.094 0.906 27 H 0.032 0.968 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.274 0.726 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.056 0.944 34 H 0.109 0.891 35 H 0.096 0.904 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.060 12.875 -4.832 15.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.234 4.234 3 N -0.208 5.208 4 C -0.071 4.071 5 C -0.361 4.361 6 S 0.354 5.646 7 C 0.114 3.886 8 H 0.081 0.919 9 N -0.373 5.373 10 C -0.041 4.041 11 C 0.349 3.651 12 O -0.516 6.516 13 C -0.602 4.602 14 H 0.110 0.890 15 C -0.185 4.185 16 N -0.449 5.449 17 Si 0.812 3.188 18 H -0.200 1.200 19 H -0.179 1.179 20 H -0.176 1.176 21 C -0.155 4.155 22 C -0.146 4.146 23 C -0.070 4.070 24 H 0.117 0.883 25 H 0.119 0.881 26 H 0.113 0.887 27 H 0.051 0.949 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.075 0.925 34 H 0.127 0.873 35 H 0.114 0.886 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.392 12.062 -4.072 15.248 hybrid contribution 0.729 -0.423 -0.044 0.844 sum -7.663 11.638 -4.116 14.530 Atomic orbital electron populations 1.20595 0.82337 1.05304 1.05032 1.27565 1.03033 0.90462 1.02296 1.65951 1.04783 1.32427 1.17665 1.21399 0.90132 0.93760 1.01781 1.26542 0.99824 0.96264 1.13519 1.84535 0.98242 1.13125 1.68661 1.19122 0.87536 0.87923 0.94027 0.91924 1.47870 1.71424 1.10009 1.08038 1.21488 0.99414 1.01430 0.81721 1.18649 0.76336 0.81924 0.88231 1.90547 1.57260 1.82949 1.20868 1.21463 1.48185 0.94776 0.95756 0.89032 1.26966 0.91715 1.02429 0.97360 1.70189 1.32908 1.23890 1.17941 0.85137 0.80020 0.75697 0.77904 1.19975 1.17919 1.17631 1.21918 0.98240 0.93797 1.01503 1.21548 0.96912 0.96977 0.99199 1.20460 0.90024 0.92616 1.03865 0.88280 0.88131 0.88722 0.94930 0.90837 0.91090 0.91619 0.91771 0.90029 0.92486 0.87299 0.88567 0.88359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.36 10.46 71.24 0.75 -0.62 16 2 C 0.04 1.31 7.38 88.57 0.65 1.96 16 3 N -0.49 -15.45 10.51 -177.08 -1.86 -17.31 16 4 C 0.06 1.94 6.78 42.08 0.29 2.22 16 5 C -0.24 -8.84 5.47 24.95 0.14 -8.70 16 6 S 0.10 3.47 23.06 -56.49 -1.30 2.17 16 7 C 0.22 9.07 2.88 44.43 0.13 9.20 16 8 H 0.06 3.12 6.91 -2.39 -0.02 3.10 16 9 N -0.64 -29.43 2.68 -830.83 -2.22 -31.65 16 10 C 0.10 3.84 9.49 127.77 1.21 5.05 16 11 C 0.54 31.58 7.61 86.36 0.66 32.23 16 12 O -0.63 -42.41 14.35 -4.32 -0.06 -42.47 16 13 C -0.57 -31.88 8.74 24.83 0.22 -31.66 16 14 H 0.09 4.62 6.00 -2.92 -0.02 4.60 16 15 C 0.03 1.71 5.50 85.31 0.47 2.17 16 16 N -0.82 -50.26 11.83 21.84 0.26 -50.00 16 17 Si 0.99 40.78 29.56 68.60 2.03 42.81 16 18 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 19 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 20 H -0.25 -9.69 7.11 99.48 0.71 -8.98 16 21 C -0.11 -3.56 5.39 30.74 0.17 -3.39 16 22 C -0.11 -2.56 5.87 30.66 0.18 -2.38 16 23 C -0.03 -0.70 6.29 30.32 0.19 -0.51 16 24 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 27 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 28 H 0.07 2.27 6.28 -2.39 -0.01 2.26 16 29 H 0.07 2.68 6.09 -2.39 -0.01 2.66 16 30 H 0.27 15.27 8.29 -92.71 -0.77 14.51 16 31 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.08 2.29 6.29 -2.38 -0.01 2.27 16 33 H 0.06 1.48 8.10 -2.38 -0.02 1.47 16 34 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -77.79 308.28 2.98 -74.81 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 1.10 Total: 16.06 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: 5.04 Total: 5.58 kcal Atomic # 7 Polarization: -95.14 SS G_CDS: -3.83 Total: -98.97 kcal Atomic # 8 Polarization: -42.41 SS G_CDS: -0.06 Total: -42.47 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.81 kcal Atomic # 16 Polarization: 3.47 SS G_CDS: -1.30 Total: 2.17 kcal Total: -77.79 2.98 -74.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153809876.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.041 kcal (2) G-P(sol) polarization free energy of solvation -77.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds